Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS17830 and ABIE41_RS17835 are separated by 7 nucleotides ABIE41_RS17835 and ABIE41_RS17840 overlap by 1 nucleotides ABIE41_RS17840 and ABIE41_RS17845 are separated by 4 nucleotides ABIE41_RS17845 and ABIE41_RS17850 are separated by 401 nucleotides
ABIE41_RS17830: ABIE41_RS17830 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 3,673,635 to 3,674,732
_RS17830
ABIE41_RS17835: ABIE41_RS17835 - peptidylprolyl isomerase, at 3,674,740 to 3,675,210
_RS17835
ABIE41_RS17840: ABIE41_RS17840 - hypothetical protein, at 3,675,210 to 3,675,878
_RS17840
ABIE41_RS17845: ABIE41_RS17845 - peptidylprolyl isomerase, at 3,675,883 to 3,676,437
_RS17845
ABIE41_RS17850: ABIE41_RS17850 - DUF1467 family protein, at 3,676,839 to 3,677,069
_RS17850
Position (kb) 3675
3676 Strain fitness (log2 ratio) -2
-1
0
1 at 3674.235 kb on - strand, within ABIE41_RS17830 at 3674.235 kb on - strand, within ABIE41_RS17830 at 3674.237 kb on - strand, within ABIE41_RS17830 at 3674.237 kb on - strand, within ABIE41_RS17830 at 3674.525 kb on - strand, within ABIE41_RS17830 at 3675.227 kb on + strand at 3675.305 kb on + strand, within ABIE41_RS17840 at 3675.305 kb on + strand, within ABIE41_RS17840 at 3675.305 kb on + strand, within ABIE41_RS17840 at 3675.306 kb on - strand, within ABIE41_RS17840 at 3675.306 kb on - strand, within ABIE41_RS17840 at 3675.686 kb on - strand, within ABIE41_RS17840 at 3675.884 kb on + strand at 3675.885 kb on - strand at 3676.014 kb on - strand, within ABIE41_RS17845 at 3676.043 kb on + strand, within ABIE41_RS17845 at 3676.115 kb on + strand, within ABIE41_RS17845 at 3676.115 kb on + strand, within ABIE41_RS17845 at 3676.238 kb on + strand, within ABIE41_RS17845 at 3676.707 kb on - strand at 3676.865 kb on - strand, within ABIE41_RS17850
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 3,674,235 - ABIE41_RS17830 0.55 +0.2 3,674,235 - ABIE41_RS17830 0.55 +0.8 3,674,237 - ABIE41_RS17830 0.55 -0.7 3,674,237 - ABIE41_RS17830 0.55 -1.0 3,674,525 - ABIE41_RS17830 0.81 -0.5 3,675,227 + +0.8 3,675,305 + ABIE41_RS17840 0.14 +1.1 3,675,305 + ABIE41_RS17840 0.14 +0.1 3,675,305 + ABIE41_RS17840 0.14 +0.0 3,675,306 - ABIE41_RS17840 0.14 -0.2 3,675,306 - ABIE41_RS17840 0.14 +0.3 3,675,686 - ABIE41_RS17840 0.71 +0.5 3,675,884 + -0.1 3,675,885 - -1.9 3,676,014 - ABIE41_RS17845 0.24 -0.3 3,676,043 + ABIE41_RS17845 0.29 +0.9 3,676,115 + ABIE41_RS17845 0.42 -0.9 3,676,115 + ABIE41_RS17845 0.42 +0.0 3,676,238 + ABIE41_RS17845 0.64 -1.4 3,676,707 - -0.7 3,676,865 - ABIE41_RS17850 0.11 +0.7
Or see this region's nucleotide sequence