Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS17815 and ABIE41_RS17820 are separated by 131 nucleotides ABIE41_RS17820 and ABIE41_RS17825 are separated by 145 nucleotides ABIE41_RS17825 and ABIE41_RS17830 are separated by 178 nucleotides
ABIE41_RS17815: ABIE41_RS17815 - SDR family NAD(P)-dependent oxidoreductase, at 3,670,355 to 3,671,095
_RS17815
ABIE41_RS17820: ABIE41_RS17820 - ribosome biogenesis GTPase Der, at 3,671,227 to 3,672,648
_RS17820
ABIE41_RS17825: ABIE41_RS17825 - tetratricopeptide repeat protein, at 3,672,794 to 3,673,456
_RS17825
ABIE41_RS17830: ABIE41_RS17830 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 3,673,635 to 3,674,732
_RS17830
Position (kb) 3671
3672
3673 Strain fitness (log2 ratio) -1
0
1 at 3670.770 kb on + strand, within ABIE41_RS17815 at 3670.823 kb on + strand, within ABIE41_RS17815 at 3670.823 kb on + strand, within ABIE41_RS17815 at 3670.824 kb on - strand, within ABIE41_RS17815 at 3670.866 kb on - strand, within ABIE41_RS17815 at 3672.789 kb on - strand at 3672.838 kb on - strand at 3672.890 kb on - strand, within ABIE41_RS17825 at 3672.890 kb on - strand, within ABIE41_RS17825 at 3673.387 kb on - strand, within ABIE41_RS17825
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 3,670,770 + ABIE41_RS17815 0.56 -0.2 3,670,823 + ABIE41_RS17815 0.63 +0.4 3,670,823 + ABIE41_RS17815 0.63 +0.5 3,670,824 - ABIE41_RS17815 0.63 +0.5 3,670,866 - ABIE41_RS17815 0.69 +0.4 3,672,789 - +0.3 3,672,838 - +0.1 3,672,890 - ABIE41_RS17825 0.14 -0.9 3,672,890 - ABIE41_RS17825 0.14 +0.4 3,673,387 - ABIE41_RS17825 0.89 -1.0
Or see this region's nucleotide sequence