Strain Fitness in Bosea sp. OAE506 around ABIE41_RS15495

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS15485 and ABIE41_RS15490 overlap by 4 nucleotidesABIE41_RS15490 and ABIE41_RS15495 are separated by 351 nucleotidesABIE41_RS15495 and ABIE41_RS15500 are separated by 3 nucleotidesABIE41_RS15500 and ABIE41_RS15505 overlap by 4 nucleotides ABIE41_RS15485: ABIE41_RS15485 - PAS domain-containing sensor histidine kinase, at 3,169,638 to 3,171,551 _RS15485 ABIE41_RS15490: ABIE41_RS15490 - phosphoribosyltransferase family protein, at 3,171,548 to 3,172,156 _RS15490 ABIE41_RS15495: ABIE41_RS15495 - tonB-system energizer ExbB, at 3,172,508 to 3,173,488 _RS15495 ABIE41_RS15500: ABIE41_RS15500 - TonB system transport protein ExbD, at 3,173,492 to 3,173,944 _RS15500 ABIE41_RS15505: ABIE41_RS15505 - energy transducer TonB, at 3,173,941 to 3,174,864 _RS15505 Position (kb) 3172 3173 3174Strain fitness (log2 ratio) -1 0 1 2at 3171.549 kb on + strandat 3171.550 kb on - strandat 3171.840 kb on + strand, within ABIE41_RS15490at 3171.841 kb on - strand, within ABIE41_RS15490at 3171.841 kb on - strand, within ABIE41_RS15490at 3171.841 kb on - strand, within ABIE41_RS15490at 3171.841 kb on - strand, within ABIE41_RS15490at 3172.468 kb on - strandat 3172.825 kb on + strand, within ABIE41_RS15495at 3172.825 kb on + strand, within ABIE41_RS15495at 3173.294 kb on + strand, within ABIE41_RS15495at 3173.294 kb on + strand, within ABIE41_RS15495at 3173.295 kb on - strand, within ABIE41_RS15495at 3173.295 kb on - strand, within ABIE41_RS15495at 3173.295 kb on - strand, within ABIE41_RS15495at 3173.295 kb on - strand, within ABIE41_RS15495at 3174.345 kb on + strand, within ABIE41_RS15505at 3174.345 kb on + strand, within ABIE41_RS15505at 3174.345 kb on + strand, within ABIE41_RS15505at 3174.346 kb on - strand, within ABIE41_RS15505

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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3,171,549 + +0.3
3,171,550 - -0.8
3,171,840 + ABIE41_RS15490 0.48 -0.5
3,171,841 - ABIE41_RS15490 0.48 -0.0
3,171,841 - ABIE41_RS15490 0.48 +1.2
3,171,841 - ABIE41_RS15490 0.48 +0.8
3,171,841 - ABIE41_RS15490 0.48 +0.6
3,172,468 - +0.3
3,172,825 + ABIE41_RS15495 0.32 +0.3
3,172,825 + ABIE41_RS15495 0.32 +0.7
3,173,294 + ABIE41_RS15495 0.80 -0.2
3,173,294 + ABIE41_RS15495 0.80 +0.5
3,173,295 - ABIE41_RS15495 0.80 -0.2
3,173,295 - ABIE41_RS15495 0.80 -1.1
3,173,295 - ABIE41_RS15495 0.80 -0.6
3,173,295 - ABIE41_RS15495 0.80 -1.6
3,174,345 + ABIE41_RS15505 0.44 +0.9
3,174,345 + ABIE41_RS15505 0.44 +1.9
3,174,345 + ABIE41_RS15505 0.44 -0.5
3,174,346 - ABIE41_RS15505 0.44 +0.2

Or see this region's nucleotide sequence