Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS14755 and ABIE41_RS14760 are separated by 108 nucleotides ABIE41_RS14760 and ABIE41_RS14765 overlap by 4 nucleotides ABIE41_RS14765 and ABIE41_RS14770 are separated by 9 nucleotides ABIE41_RS14770 and ABIE41_RS14775 are separated by 125 nucleotides
ABIE41_RS14755: ABIE41_RS14755 - DUF599 family protein, at 3,018,228 to 3,018,938
_RS14755
ABIE41_RS14760: ABIE41_RS14760 - rhodanese-like domain-containing protein, at 3,019,047 to 3,019,475
_RS14760
ABIE41_RS14765: ABIE41_RS14765 - hypothetical protein, at 3,019,472 to 3,019,654
_RS14765
ABIE41_RS14770: ABIE41_RS14770 - gamma-glutamylcyclotransferase family protein, at 3,019,664 to 3,020,179
_RS14770
ABIE41_RS14775: ABIE41_RS14775 - isovaleryl-CoA dehydrogenase, at 3,020,305 to 3,021,477
_RS14775
Position (kb)
3019
3020 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3018.520 kb on + strand, within ABIE41_RS14755 at 3018.520 kb on + strand, within ABIE41_RS14755 at 3018.521 kb on - strand, within ABIE41_RS14755 at 3018.535 kb on + strand, within ABIE41_RS14755 at 3019.071 kb on + strand at 3019.270 kb on - strand, within ABIE41_RS14760 at 3019.791 kb on + strand, within ABIE41_RS14770 at 3019.791 kb on + strand, within ABIE41_RS14770 at 3019.791 kb on + strand, within ABIE41_RS14770 at 3019.792 kb on - strand, within ABIE41_RS14770 at 3019.792 kb on - strand, within ABIE41_RS14770 at 3019.792 kb on - strand, within ABIE41_RS14770 at 3019.840 kb on + strand, within ABIE41_RS14770 at 3019.841 kb on - strand, within ABIE41_RS14770 at 3019.843 kb on - strand, within ABIE41_RS14770 at 3019.884 kb on + strand, within ABIE41_RS14770 at 3019.885 kb on - strand, within ABIE41_RS14770 at 3019.885 kb on - strand, within ABIE41_RS14770 at 3019.941 kb on + strand, within ABIE41_RS14770 at 3019.941 kb on + strand, within ABIE41_RS14770 at 3019.941 kb on + strand, within ABIE41_RS14770 at 3019.941 kb on + strand, within ABIE41_RS14770 at 3019.941 kb on + strand, within ABIE41_RS14770 at 3019.942 kb on - strand, within ABIE41_RS14770 at 3020.378 kb on + strand at 3020.379 kb on - strand at 3020.426 kb on + strand, within ABIE41_RS14775 at 3020.426 kb on + strand, within ABIE41_RS14775 at 3020.427 kb on - strand, within ABIE41_RS14775 at 3020.556 kb on - strand, within ABIE41_RS14775 at 3020.556 kb on - strand, within ABIE41_RS14775 at 3020.556 kb on - strand, within ABIE41_RS14775 at 3020.556 kb on - strand, within ABIE41_RS14775 at 3020.556 kb on - strand, within ABIE41_RS14775 at 3020.561 kb on + strand, within ABIE41_RS14775 at 3020.561 kb on + strand, within ABIE41_RS14775 at 3020.561 kb on + strand, within ABIE41_RS14775 at 3020.561 kb on + strand, within ABIE41_RS14775 at 3020.588 kb on + strand, within ABIE41_RS14775 at 3020.588 kb on + strand, within ABIE41_RS14775 at 3020.588 kb on + strand, within ABIE41_RS14775 at 3020.588 kb on + strand, within ABIE41_RS14775 at 3020.588 kb on + strand, within ABIE41_RS14775 at 3020.588 kb on + strand, within ABIE41_RS14775 at 3020.588 kb on + strand, within ABIE41_RS14775 at 3020.588 kb on + strand, within ABIE41_RS14775 at 3020.588 kb on + strand, within ABIE41_RS14775 at 3020.588 kb on + strand, within ABIE41_RS14775 at 3020.588 kb on + strand, within ABIE41_RS14775 at 3020.588 kb on + strand, within ABIE41_RS14775 at 3020.588 kb on + strand, within ABIE41_RS14775 at 3020.588 kb on + strand, within ABIE41_RS14775 at 3020.589 kb on - strand, within ABIE41_RS14775 at 3020.589 kb on - strand, within ABIE41_RS14775 at 3020.589 kb on - strand, within ABIE41_RS14775 at 3020.589 kb on - strand, within ABIE41_RS14775 at 3020.589 kb on - strand, within ABIE41_RS14775 at 3020.589 kb on - strand, within ABIE41_RS14775 at 3020.589 kb on - strand, within ABIE41_RS14775 at 3020.589 kb on - strand, within ABIE41_RS14775
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 3,018,520 + ABIE41_RS14755 0.41 -0.2 3,018,520 + ABIE41_RS14755 0.41 -0.4 3,018,521 - ABIE41_RS14755 0.41 +1.6 3,018,535 + ABIE41_RS14755 0.43 +0.7 3,019,071 + -0.2 3,019,270 - ABIE41_RS14760 0.52 -0.2 3,019,791 + ABIE41_RS14770 0.25 -0.1 3,019,791 + ABIE41_RS14770 0.25 -0.1 3,019,791 + ABIE41_RS14770 0.25 -0.1 3,019,792 - ABIE41_RS14770 0.25 +1.4 3,019,792 - ABIE41_RS14770 0.25 +0.4 3,019,792 - ABIE41_RS14770 0.25 -0.2 3,019,840 + ABIE41_RS14770 0.34 -0.7 3,019,841 - ABIE41_RS14770 0.34 +0.2 3,019,843 - ABIE41_RS14770 0.35 +0.7 3,019,884 + ABIE41_RS14770 0.43 -0.1 3,019,885 - ABIE41_RS14770 0.43 -0.9 3,019,885 - ABIE41_RS14770 0.43 -1.8 3,019,941 + ABIE41_RS14770 0.54 -1.0 3,019,941 + ABIE41_RS14770 0.54 -0.4 3,019,941 + ABIE41_RS14770 0.54 +0.0 3,019,941 + ABIE41_RS14770 0.54 +0.2 3,019,941 + ABIE41_RS14770 0.54 -0.5 3,019,942 - ABIE41_RS14770 0.54 -0.5 3,020,378 + +0.3 3,020,379 - -2.2 3,020,426 + ABIE41_RS14775 0.10 +0.7 3,020,426 + ABIE41_RS14775 0.10 -0.3 3,020,427 - ABIE41_RS14775 0.10 +3.4 3,020,556 - ABIE41_RS14775 0.21 -0.1 3,020,556 - ABIE41_RS14775 0.21 +0.2 3,020,556 - ABIE41_RS14775 0.21 -0.9 3,020,556 - ABIE41_RS14775 0.21 -0.3 3,020,556 - ABIE41_RS14775 0.21 -0.5 3,020,561 + ABIE41_RS14775 0.22 +0.2 3,020,561 + ABIE41_RS14775 0.22 -1.3 3,020,561 + ABIE41_RS14775 0.22 -0.4 3,020,561 + ABIE41_RS14775 0.22 +0.6 3,020,588 + ABIE41_RS14775 0.24 +1.4 3,020,588 + ABIE41_RS14775 0.24 -0.1 3,020,588 + ABIE41_RS14775 0.24 -3.6 3,020,588 + ABIE41_RS14775 0.24 -0.0 3,020,588 + ABIE41_RS14775 0.24 +0.0 3,020,588 + ABIE41_RS14775 0.24 +0.8 3,020,588 + ABIE41_RS14775 0.24 +0.9 3,020,588 + ABIE41_RS14775 0.24 +0.7 3,020,588 + ABIE41_RS14775 0.24 -1.0 3,020,588 + ABIE41_RS14775 0.24 -1.2 3,020,588 + ABIE41_RS14775 0.24 -0.5 3,020,588 + ABIE41_RS14775 0.24 +2.3 3,020,588 + ABIE41_RS14775 0.24 +1.3 3,020,588 + ABIE41_RS14775 0.24 -0.1 3,020,589 - ABIE41_RS14775 0.24 -0.2 3,020,589 - ABIE41_RS14775 0.24 -0.1 3,020,589 - ABIE41_RS14775 0.24 +0.6 3,020,589 - ABIE41_RS14775 0.24 -1.7 3,020,589 - ABIE41_RS14775 0.24 +1.8 3,020,589 - ABIE41_RS14775 0.24 -0.9 3,020,589 - ABIE41_RS14775 0.24 -1.1 3,020,589 - ABIE41_RS14775 0.24 -0.2
Or see this region's nucleotide sequence