Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14745

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS14735 and ABIE41_RS14740 are separated by 53 nucleotidesABIE41_RS14740 and ABIE41_RS14745 are separated by 69 nucleotidesABIE41_RS14745 and ABIE41_RS14750 are separated by 4 nucleotidesABIE41_RS14750 and ABIE41_RS14755 are separated by 13 nucleotides ABIE41_RS14735: ABIE41_RS14735 - glutathione S-transferase, at 3,015,902 to 3,016,522 _RS14735 ABIE41_RS14740: ABIE41_RS14740 - lysozyme inhibitor LprI family protein, at 3,016,576 to 3,017,082 _RS14740 ABIE41_RS14745: ABIE41_RS14745 - YdcF family protein, at 3,017,152 to 3,017,940 _RS14745 ABIE41_RS14750: ABIE41_RS14750 - DUF3253 domain-containing protein, at 3,017,945 to 3,018,214 _RS14750 ABIE41_RS14755: ABIE41_RS14755 - DUF599 family protein, at 3,018,228 to 3,018,938 _RS14755 Position (kb) 3017 3018Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3016.153 kb on - strand, within ABIE41_RS14735at 3016.265 kb on + strand, within ABIE41_RS14735at 3016.266 kb on - strand, within ABIE41_RS14735at 3016.266 kb on - strand, within ABIE41_RS14735at 3016.266 kb on - strand, within ABIE41_RS14735at 3016.267 kb on + strand, within ABIE41_RS14735at 3016.267 kb on + strand, within ABIE41_RS14735at 3016.267 kb on + strand, within ABIE41_RS14735at 3016.268 kb on - strand, within ABIE41_RS14735at 3016.268 kb on - strand, within ABIE41_RS14735at 3016.268 kb on - strand, within ABIE41_RS14735at 3016.906 kb on + strand, within ABIE41_RS14740at 3016.906 kb on + strand, within ABIE41_RS14740at 3016.906 kb on + strand, within ABIE41_RS14740at 3016.907 kb on - strand, within ABIE41_RS14740at 3016.907 kb on - strand, within ABIE41_RS14740at 3016.907 kb on - strand, within ABIE41_RS14740at 3016.907 kb on - strand, within ABIE41_RS14740at 3016.930 kb on + strand, within ABIE41_RS14740at 3016.930 kb on + strand, within ABIE41_RS14740at 3016.930 kb on + strand, within ABIE41_RS14740at 3017.157 kb on - strandat 3017.973 kb on + strand, within ABIE41_RS14750at 3018.304 kb on + strand, within ABIE41_RS14755at 3018.304 kb on + strand, within ABIE41_RS14755at 3018.369 kb on - strand, within ABIE41_RS14755at 3018.369 kb on - strand, within ABIE41_RS14755at 3018.369 kb on - strand, within ABIE41_RS14755at 3018.369 kb on - strand, within ABIE41_RS14755at 3018.370 kb on + strand, within ABIE41_RS14755at 3018.370 kb on + strand, within ABIE41_RS14755at 3018.370 kb on + strand, within ABIE41_RS14755at 3018.370 kb on + strand, within ABIE41_RS14755at 3018.371 kb on - strand, within ABIE41_RS14755at 3018.371 kb on - strand, within ABIE41_RS14755at 3018.371 kb on - strand, within ABIE41_RS14755at 3018.371 kb on - strand, within ABIE41_RS14755at 3018.371 kb on - strand, within ABIE41_RS14755at 3018.520 kb on + strand, within ABIE41_RS14755at 3018.520 kb on + strand, within ABIE41_RS14755at 3018.521 kb on - strand, within ABIE41_RS14755at 3018.535 kb on + strand, within ABIE41_RS14755

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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3,016,153 - ABIE41_RS14735 0.40 +3.0
3,016,265 + ABIE41_RS14735 0.58 +2.0
3,016,266 - ABIE41_RS14735 0.59 +1.3
3,016,266 - ABIE41_RS14735 0.59 -1.4
3,016,266 - ABIE41_RS14735 0.59 +0.8
3,016,267 + ABIE41_RS14735 0.59 -1.5
3,016,267 + ABIE41_RS14735 0.59 -0.2
3,016,267 + ABIE41_RS14735 0.59 +0.1
3,016,268 - ABIE41_RS14735 0.59 +0.6
3,016,268 - ABIE41_RS14735 0.59 +0.5
3,016,268 - ABIE41_RS14735 0.59 +1.0
3,016,906 + ABIE41_RS14740 0.65 +0.7
3,016,906 + ABIE41_RS14740 0.65 +1.2
3,016,906 + ABIE41_RS14740 0.65 +0.7
3,016,907 - ABIE41_RS14740 0.65 +3.0
3,016,907 - ABIE41_RS14740 0.65 +2.4
3,016,907 - ABIE41_RS14740 0.65 +0.4
3,016,907 - ABIE41_RS14740 0.65 +0.6
3,016,930 + ABIE41_RS14740 0.70 -0.0
3,016,930 + ABIE41_RS14740 0.70 +0.1
3,016,930 + ABIE41_RS14740 0.70 +0.3
3,017,157 - -0.4
3,017,973 + ABIE41_RS14750 0.10 +0.9
3,018,304 + ABIE41_RS14755 0.11 +2.6
3,018,304 + ABIE41_RS14755 0.11 +0.3
3,018,369 - ABIE41_RS14755 0.20 +0.6
3,018,369 - ABIE41_RS14755 0.20 -2.2
3,018,369 - ABIE41_RS14755 0.20 +0.1
3,018,369 - ABIE41_RS14755 0.20 -0.8
3,018,370 + ABIE41_RS14755 0.20 -0.7
3,018,370 + ABIE41_RS14755 0.20 +1.2
3,018,370 + ABIE41_RS14755 0.20 +1.1
3,018,370 + ABIE41_RS14755 0.20 +0.4
3,018,371 - ABIE41_RS14755 0.20 +0.6
3,018,371 - ABIE41_RS14755 0.20 -0.7
3,018,371 - ABIE41_RS14755 0.20 +0.5
3,018,371 - ABIE41_RS14755 0.20 +0.8
3,018,371 - ABIE41_RS14755 0.20 -0.6
3,018,520 + ABIE41_RS14755 0.41 -0.2
3,018,520 + ABIE41_RS14755 0.41 -0.4
3,018,521 - ABIE41_RS14755 0.41 +1.6
3,018,535 + ABIE41_RS14755 0.43 +0.7

Or see this region's nucleotide sequence