Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS14410 and ABIE41_RS14415 are separated by 7 nucleotides ABIE41_RS14415 and ABIE41_RS14420 are separated by 222 nucleotides
ABIE41_RS14410: ABIE41_RS14410 - glycerol-3-phosphate dehydrogenase, at 2,954,795 to 2,956,306
_RS14410
ABIE41_RS14415: ABIE41_RS14415 - nucleotide sugar dehydrogenase, at 2,956,314 to 2,957,651
_RS14415
ABIE41_RS14420: ABIE41_RS14420 - nicotinate phosphoribosyltransferase, at 2,957,874 to 2,959,148
_RS14420
Position (kb)
2956
2957
2958 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2955.355 kb on - strand, within ABIE41_RS14410 at 2955.421 kb on - strand, within ABIE41_RS14410 at 2955.421 kb on - strand, within ABIE41_RS14410 at 2955.510 kb on + strand, within ABIE41_RS14410 at 2955.511 kb on - strand, within ABIE41_RS14410 at 2955.555 kb on + strand, within ABIE41_RS14410 at 2955.555 kb on + strand, within ABIE41_RS14410 at 2955.555 kb on + strand, within ABIE41_RS14410 at 2955.555 kb on + strand, within ABIE41_RS14410 at 2955.555 kb on + strand, within ABIE41_RS14410 at 2955.556 kb on - strand, within ABIE41_RS14410 at 2955.556 kb on - strand, within ABIE41_RS14410 at 2955.556 kb on - strand, within ABIE41_RS14410 at 2955.556 kb on - strand, within ABIE41_RS14410 at 2955.573 kb on + strand, within ABIE41_RS14410 at 2956.119 kb on + strand, within ABIE41_RS14410 at 2956.119 kb on + strand, within ABIE41_RS14410 at 2956.120 kb on - strand, within ABIE41_RS14410 at 2956.120 kb on - strand, within ABIE41_RS14410 at 2956.132 kb on - strand, within ABIE41_RS14410 at 2956.284 kb on + strand at 2956.285 kb on - strand at 2956.285 kb on - strand at 2956.536 kb on - strand, within ABIE41_RS14415 at 2956.633 kb on + strand, within ABIE41_RS14415 at 2956.633 kb on + strand, within ABIE41_RS14415 at 2956.633 kb on + strand, within ABIE41_RS14415 at 2956.634 kb on - strand, within ABIE41_RS14415 at 2956.634 kb on - strand, within ABIE41_RS14415 at 2956.804 kb on + strand, within ABIE41_RS14415 at 2956.804 kb on + strand, within ABIE41_RS14415 at 2956.804 kb on + strand, within ABIE41_RS14415 at 2956.804 kb on + strand, within ABIE41_RS14415 at 2956.804 kb on + strand, within ABIE41_RS14415 at 2956.805 kb on - strand, within ABIE41_RS14415 at 2956.927 kb on + strand, within ABIE41_RS14415 at 2956.927 kb on + strand, within ABIE41_RS14415 at 2956.927 kb on + strand, within ABIE41_RS14415 at 2956.927 kb on + strand, within ABIE41_RS14415 at 2956.927 kb on + strand, within ABIE41_RS14415 at 2956.927 kb on + strand, within ABIE41_RS14415 at 2956.928 kb on - strand, within ABIE41_RS14415 at 2957.051 kb on - strand, within ABIE41_RS14415 at 2957.242 kb on + strand, within ABIE41_RS14415 at 2957.243 kb on - strand, within ABIE41_RS14415 at 2957.243 kb on - strand, within ABIE41_RS14415 at 2957.317 kb on + strand, within ABIE41_RS14415 at 2957.317 kb on + strand, within ABIE41_RS14415 at 2957.318 kb on - strand, within ABIE41_RS14415 at 2957.575 kb on + strand at 2957.575 kb on + strand at 2957.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 2,955,355 - ABIE41_RS14410 0.37 -1.0 2,955,421 - ABIE41_RS14410 0.41 -1.3 2,955,421 - ABIE41_RS14410 0.41 -1.8 2,955,510 + ABIE41_RS14410 0.47 -0.7 2,955,511 - ABIE41_RS14410 0.47 -0.9 2,955,555 + ABIE41_RS14410 0.50 -0.3 2,955,555 + ABIE41_RS14410 0.50 -0.2 2,955,555 + ABIE41_RS14410 0.50 -0.6 2,955,555 + ABIE41_RS14410 0.50 -0.9 2,955,555 + ABIE41_RS14410 0.50 +1.1 2,955,556 - ABIE41_RS14410 0.50 -1.4 2,955,556 - ABIE41_RS14410 0.50 -0.8 2,955,556 - ABIE41_RS14410 0.50 +0.2 2,955,556 - ABIE41_RS14410 0.50 +1.4 2,955,573 + ABIE41_RS14410 0.51 -3.0 2,956,119 + ABIE41_RS14410 0.88 -3.0 2,956,119 + ABIE41_RS14410 0.88 -1.7 2,956,120 - ABIE41_RS14410 0.88 +2.0 2,956,120 - ABIE41_RS14410 0.88 -0.1 2,956,132 - ABIE41_RS14410 0.88 -2.2 2,956,284 + -0.3 2,956,285 - -1.2 2,956,285 - +2.0 2,956,536 - ABIE41_RS14415 0.17 -0.5 2,956,633 + ABIE41_RS14415 0.24 -0.1 2,956,633 + ABIE41_RS14415 0.24 -0.6 2,956,633 + ABIE41_RS14415 0.24 -2.4 2,956,634 - ABIE41_RS14415 0.24 -1.2 2,956,634 - ABIE41_RS14415 0.24 -0.2 2,956,804 + ABIE41_RS14415 0.37 -0.2 2,956,804 + ABIE41_RS14415 0.37 -0.7 2,956,804 + ABIE41_RS14415 0.37 -2.4 2,956,804 + ABIE41_RS14415 0.37 -0.8 2,956,804 + ABIE41_RS14415 0.37 -0.2 2,956,805 - ABIE41_RS14415 0.37 -0.2 2,956,927 + ABIE41_RS14415 0.46 -0.5 2,956,927 + ABIE41_RS14415 0.46 -0.2 2,956,927 + ABIE41_RS14415 0.46 +0.8 2,956,927 + ABIE41_RS14415 0.46 +0.0 2,956,927 + ABIE41_RS14415 0.46 -1.8 2,956,927 + ABIE41_RS14415 0.46 +0.3 2,956,928 - ABIE41_RS14415 0.46 +0.4 2,957,051 - ABIE41_RS14415 0.55 -0.3 2,957,242 + ABIE41_RS14415 0.69 -0.1 2,957,243 - ABIE41_RS14415 0.69 +0.8 2,957,243 - ABIE41_RS14415 0.69 +0.1 2,957,317 + ABIE41_RS14415 0.75 -3.0 2,957,317 + ABIE41_RS14415 0.75 -0.1 2,957,318 - ABIE41_RS14415 0.75 -0.2 2,957,575 + -0.4 2,957,575 + -1.1 2,957,576 - +0.1
Or see this region's nucleotide sequence