Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14415

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS14410 and ABIE41_RS14415 are separated by 7 nucleotidesABIE41_RS14415 and ABIE41_RS14420 are separated by 222 nucleotides ABIE41_RS14410: ABIE41_RS14410 - glycerol-3-phosphate dehydrogenase, at 2,954,795 to 2,956,306 _RS14410 ABIE41_RS14415: ABIE41_RS14415 - nucleotide sugar dehydrogenase, at 2,956,314 to 2,957,651 _RS14415 ABIE41_RS14420: ABIE41_RS14420 - nicotinate phosphoribosyltransferase, at 2,957,874 to 2,959,148 _RS14420 Position (kb) 2956 2957 2958Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2955.355 kb on - strand, within ABIE41_RS14410at 2955.421 kb on - strand, within ABIE41_RS14410at 2955.421 kb on - strand, within ABIE41_RS14410at 2955.510 kb on + strand, within ABIE41_RS14410at 2955.511 kb on - strand, within ABIE41_RS14410at 2955.555 kb on + strand, within ABIE41_RS14410at 2955.555 kb on + strand, within ABIE41_RS14410at 2955.555 kb on + strand, within ABIE41_RS14410at 2955.555 kb on + strand, within ABIE41_RS14410at 2955.555 kb on + strand, within ABIE41_RS14410at 2955.556 kb on - strand, within ABIE41_RS14410at 2955.556 kb on - strand, within ABIE41_RS14410at 2955.556 kb on - strand, within ABIE41_RS14410at 2955.556 kb on - strand, within ABIE41_RS14410at 2955.573 kb on + strand, within ABIE41_RS14410at 2956.119 kb on + strand, within ABIE41_RS14410at 2956.119 kb on + strand, within ABIE41_RS14410at 2956.120 kb on - strand, within ABIE41_RS14410at 2956.120 kb on - strand, within ABIE41_RS14410at 2956.132 kb on - strand, within ABIE41_RS14410at 2956.284 kb on + strandat 2956.285 kb on - strandat 2956.285 kb on - strandat 2956.536 kb on - strand, within ABIE41_RS14415at 2956.633 kb on + strand, within ABIE41_RS14415at 2956.633 kb on + strand, within ABIE41_RS14415at 2956.633 kb on + strand, within ABIE41_RS14415at 2956.634 kb on - strand, within ABIE41_RS14415at 2956.634 kb on - strand, within ABIE41_RS14415at 2956.804 kb on + strand, within ABIE41_RS14415at 2956.804 kb on + strand, within ABIE41_RS14415at 2956.804 kb on + strand, within ABIE41_RS14415at 2956.804 kb on + strand, within ABIE41_RS14415at 2956.804 kb on + strand, within ABIE41_RS14415at 2956.805 kb on - strand, within ABIE41_RS14415at 2956.927 kb on + strand, within ABIE41_RS14415at 2956.927 kb on + strand, within ABIE41_RS14415at 2956.927 kb on + strand, within ABIE41_RS14415at 2956.927 kb on + strand, within ABIE41_RS14415at 2956.927 kb on + strand, within ABIE41_RS14415at 2956.927 kb on + strand, within ABIE41_RS14415at 2956.928 kb on - strand, within ABIE41_RS14415at 2957.051 kb on - strand, within ABIE41_RS14415at 2957.242 kb on + strand, within ABIE41_RS14415at 2957.243 kb on - strand, within ABIE41_RS14415at 2957.243 kb on - strand, within ABIE41_RS14415at 2957.317 kb on + strand, within ABIE41_RS14415at 2957.317 kb on + strand, within ABIE41_RS14415at 2957.318 kb on - strand, within ABIE41_RS14415at 2957.575 kb on + strandat 2957.575 kb on + strandat 2957.576 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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2,955,355 - ABIE41_RS14410 0.37 -1.0
2,955,421 - ABIE41_RS14410 0.41 -1.3
2,955,421 - ABIE41_RS14410 0.41 -1.8
2,955,510 + ABIE41_RS14410 0.47 -0.7
2,955,511 - ABIE41_RS14410 0.47 -0.9
2,955,555 + ABIE41_RS14410 0.50 -0.3
2,955,555 + ABIE41_RS14410 0.50 -0.2
2,955,555 + ABIE41_RS14410 0.50 -0.6
2,955,555 + ABIE41_RS14410 0.50 -0.9
2,955,555 + ABIE41_RS14410 0.50 +1.1
2,955,556 - ABIE41_RS14410 0.50 -1.4
2,955,556 - ABIE41_RS14410 0.50 -0.8
2,955,556 - ABIE41_RS14410 0.50 +0.2
2,955,556 - ABIE41_RS14410 0.50 +1.4
2,955,573 + ABIE41_RS14410 0.51 -3.0
2,956,119 + ABIE41_RS14410 0.88 -3.0
2,956,119 + ABIE41_RS14410 0.88 -1.7
2,956,120 - ABIE41_RS14410 0.88 +2.0
2,956,120 - ABIE41_RS14410 0.88 -0.1
2,956,132 - ABIE41_RS14410 0.88 -2.2
2,956,284 + -0.3
2,956,285 - -1.2
2,956,285 - +2.0
2,956,536 - ABIE41_RS14415 0.17 -0.5
2,956,633 + ABIE41_RS14415 0.24 -0.1
2,956,633 + ABIE41_RS14415 0.24 -0.6
2,956,633 + ABIE41_RS14415 0.24 -2.4
2,956,634 - ABIE41_RS14415 0.24 -1.2
2,956,634 - ABIE41_RS14415 0.24 -0.2
2,956,804 + ABIE41_RS14415 0.37 -0.2
2,956,804 + ABIE41_RS14415 0.37 -0.7
2,956,804 + ABIE41_RS14415 0.37 -2.4
2,956,804 + ABIE41_RS14415 0.37 -0.8
2,956,804 + ABIE41_RS14415 0.37 -0.2
2,956,805 - ABIE41_RS14415 0.37 -0.2
2,956,927 + ABIE41_RS14415 0.46 -0.5
2,956,927 + ABIE41_RS14415 0.46 -0.2
2,956,927 + ABIE41_RS14415 0.46 +0.8
2,956,927 + ABIE41_RS14415 0.46 +0.0
2,956,927 + ABIE41_RS14415 0.46 -1.8
2,956,927 + ABIE41_RS14415 0.46 +0.3
2,956,928 - ABIE41_RS14415 0.46 +0.4
2,957,051 - ABIE41_RS14415 0.55 -0.3
2,957,242 + ABIE41_RS14415 0.69 -0.1
2,957,243 - ABIE41_RS14415 0.69 +0.8
2,957,243 - ABIE41_RS14415 0.69 +0.1
2,957,317 + ABIE41_RS14415 0.75 -3.0
2,957,317 + ABIE41_RS14415 0.75 -0.1
2,957,318 - ABIE41_RS14415 0.75 -0.2
2,957,575 + -0.4
2,957,575 + -1.1
2,957,576 - +0.1

Or see this region's nucleotide sequence