Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08810 and ABIE41_RS08815 are separated by 87 nucleotides ABIE41_RS08815 and ABIE41_RS08820 are separated by 31 nucleotides ABIE41_RS08820 and ABIE41_RS08825 overlap by 4 nucleotides
ABIE41_RS08810: ABIE41_RS08810 - hypothetical protein, at 1,824,551 to 1,824,814
_RS08810
ABIE41_RS08815: ABIE41_RS08815 - RbsD/FucU domain-containing protein, at 1,824,902 to 1,825,357
_RS08815
ABIE41_RS08820: ABIE41_RS08820 - amidohydrolase family protein, at 1,825,389 to 1,826,237
_RS08820
ABIE41_RS08825: ABIE41_RS08825 - aldo/keto reductase, at 1,826,234 to 1,827,259
_RS08825
Position (kb) 1825
1826
1827 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1824.498 kb on - strand at 1824.514 kb on + strand at 1824.515 kb on - strand at 1824.951 kb on + strand, within ABIE41_RS08815 at 1824.952 kb on - strand, within ABIE41_RS08815 at 1824.952 kb on - strand, within ABIE41_RS08815 at 1825.005 kb on + strand, within ABIE41_RS08815 at 1825.005 kb on + strand, within ABIE41_RS08815 at 1825.005 kb on + strand, within ABIE41_RS08815 at 1825.005 kb on + strand, within ABIE41_RS08815 at 1825.006 kb on - strand, within ABIE41_RS08815 at 1825.006 kb on - strand, within ABIE41_RS08815 at 1825.006 kb on - strand, within ABIE41_RS08815 at 1825.414 kb on + strand at 1825.415 kb on - strand at 1825.415 kb on - strand at 1825.415 kb on - strand at 1825.415 kb on - strand at 1826.044 kb on + strand, within ABIE41_RS08820 at 1826.044 kb on + strand, within ABIE41_RS08820 at 1826.180 kb on - strand at 1826.180 kb on - strand at 1826.180 kb on - strand at 1826.278 kb on + strand at 1826.278 kb on + strand at 1826.493 kb on + strand, within ABIE41_RS08825 at 1826.493 kb on + strand, within ABIE41_RS08825 at 1826.493 kb on + strand, within ABIE41_RS08825 at 1826.493 kb on + strand, within ABIE41_RS08825 at 1826.493 kb on + strand, within ABIE41_RS08825 at 1826.493 kb on + strand, within ABIE41_RS08825 at 1826.494 kb on - strand, within ABIE41_RS08825 at 1826.494 kb on - strand, within ABIE41_RS08825 at 1826.494 kb on - strand, within ABIE41_RS08825 at 1826.494 kb on - strand, within ABIE41_RS08825 at 1826.494 kb on - strand, within ABIE41_RS08825 at 1826.494 kb on - strand, within ABIE41_RS08825 at 1826.686 kb on + strand, within ABIE41_RS08825 at 1826.687 kb on - strand, within ABIE41_RS08825 at 1826.687 kb on - strand, within ABIE41_RS08825 at 1826.904 kb on + strand, within ABIE41_RS08825 at 1826.904 kb on + strand, within ABIE41_RS08825 at 1826.904 kb on + strand, within ABIE41_RS08825 at 1826.904 kb on + strand, within ABIE41_RS08825 at 1826.905 kb on - strand, within ABIE41_RS08825 at 1826.905 kb on - strand, within ABIE41_RS08825 at 1826.910 kb on + strand, within ABIE41_RS08825 at 1827.163 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 1,824,498 - +0.5 1,824,514 + -0.8 1,824,515 - +0.4 1,824,951 + ABIE41_RS08815 0.11 -0.0 1,824,952 - ABIE41_RS08815 0.11 -1.0 1,824,952 - ABIE41_RS08815 0.11 -0.3 1,825,005 + ABIE41_RS08815 0.23 +0.3 1,825,005 + ABIE41_RS08815 0.23 -1.6 1,825,005 + ABIE41_RS08815 0.23 -1.1 1,825,005 + ABIE41_RS08815 0.23 +0.8 1,825,006 - ABIE41_RS08815 0.23 -0.2 1,825,006 - ABIE41_RS08815 0.23 +0.0 1,825,006 - ABIE41_RS08815 0.23 -1.8 1,825,414 + +1.1 1,825,415 - +0.3 1,825,415 - -0.3 1,825,415 - -0.4 1,825,415 - -0.1 1,826,044 + ABIE41_RS08820 0.77 +0.5 1,826,044 + ABIE41_RS08820 0.77 +2.3 1,826,180 - -0.8 1,826,180 - -0.2 1,826,180 - +2.0 1,826,278 + +0.4 1,826,278 + -0.1 1,826,493 + ABIE41_RS08825 0.25 +0.3 1,826,493 + ABIE41_RS08825 0.25 +1.0 1,826,493 + ABIE41_RS08825 0.25 -2.1 1,826,493 + ABIE41_RS08825 0.25 +0.3 1,826,493 + ABIE41_RS08825 0.25 -1.5 1,826,493 + ABIE41_RS08825 0.25 +0.5 1,826,494 - ABIE41_RS08825 0.25 +0.4 1,826,494 - ABIE41_RS08825 0.25 +2.0 1,826,494 - ABIE41_RS08825 0.25 -2.1 1,826,494 - ABIE41_RS08825 0.25 +1.1 1,826,494 - ABIE41_RS08825 0.25 -1.4 1,826,494 - ABIE41_RS08825 0.25 -0.0 1,826,686 + ABIE41_RS08825 0.44 -0.0 1,826,687 - ABIE41_RS08825 0.44 +0.1 1,826,687 - ABIE41_RS08825 0.44 +0.5 1,826,904 + ABIE41_RS08825 0.65 +1.3 1,826,904 + ABIE41_RS08825 0.65 -0.3 1,826,904 + ABIE41_RS08825 0.65 -0.6 1,826,904 + ABIE41_RS08825 0.65 +0.3 1,826,905 - ABIE41_RS08825 0.65 +0.7 1,826,905 - ABIE41_RS08825 0.65 +0.5 1,826,910 + ABIE41_RS08825 0.66 +0.2 1,827,163 - -0.1
Or see this region's nucleotide sequence