Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08790 and ABIE41_RS08795 overlap by 47 nucleotides ABIE41_RS08795 and ABIE41_RS08800 are separated by 490 nucleotides ABIE41_RS08800 and ABIE41_RS08805 are separated by 703 nucleotides
ABIE41_RS08790: ABIE41_RS08790 - hypothetical protein, at 1,822,255 to 1,822,425
_RS08790
ABIE41_RS08795: ABIE41_RS08795 - DUF5343 domain-containing protein, at 1,822,379 to 1,822,576
_RS08795
ABIE41_RS08800: ABIE41_RS08800 - DUF559 domain-containing protein, at 1,823,067 to 1,823,405
_RS08800
ABIE41_RS08805: ABIE41_RS08805 - hypothetical protein, at 1,824,109 to 1,824,342
_RS08805
Position (kb)
1823
1824 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1822.561 kb on - strand at 1822.561 kb on - strand at 1822.590 kb on + strand at 1822.648 kb on + strand at 1822.695 kb on + strand at 1822.695 kb on + strand at 1822.696 kb on - strand at 1822.704 kb on + strand at 1822.704 kb on + strand at 1822.705 kb on - strand at 1822.705 kb on - strand at 1822.769 kb on - strand at 1822.953 kb on - strand at 1823.068 kb on + strand at 1823.191 kb on + strand, within ABIE41_RS08800 at 1823.192 kb on - strand, within ABIE41_RS08800 at 1823.223 kb on + strand, within ABIE41_RS08800 at 1823.223 kb on + strand, within ABIE41_RS08800 at 1823.223 kb on + strand, within ABIE41_RS08800 at 1823.224 kb on - strand, within ABIE41_RS08800 at 1823.224 kb on - strand, within ABIE41_RS08800 at 1823.270 kb on - strand, within ABIE41_RS08800 at 1823.270 kb on - strand, within ABIE41_RS08800 at 1823.536 kb on + strand at 1823.665 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 1,822,561 - +2.0 1,822,561 - -1.5 1,822,590 + -0.2 1,822,648 + +0.2 1,822,695 + -0.9 1,822,695 + -0.0 1,822,696 - +3.4 1,822,704 + -3.4 1,822,704 + -0.3 1,822,705 - -0.6 1,822,705 - -1.6 1,822,769 - +0.7 1,822,953 - +1.2 1,823,068 + +2.0 1,823,191 + ABIE41_RS08800 0.37 +1.8 1,823,192 - ABIE41_RS08800 0.37 +0.1 1,823,223 + ABIE41_RS08800 0.46 -0.5 1,823,223 + ABIE41_RS08800 0.46 +2.0 1,823,223 + ABIE41_RS08800 0.46 +0.6 1,823,224 - ABIE41_RS08800 0.46 -0.2 1,823,224 - ABIE41_RS08800 0.46 +0.9 1,823,270 - ABIE41_RS08800 0.60 -1.0 1,823,270 - ABIE41_RS08800 0.60 +0.1 1,823,536 + -1.0 1,823,665 - -0.6
Or see this region's nucleotide sequence