Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04930 and ABIE41_RS04935 are separated by 60 nucleotides ABIE41_RS04935 and ABIE41_RS04940 overlap by 4 nucleotides ABIE41_RS04940 and ABIE41_RS04945 are separated by 10 nucleotides
ABIE41_RS04930: ABIE41_RS04930 - CopG family ribbon-helix-helix protein, at 1,026,479 to 1,026,721
_RS04930
ABIE41_RS04935: ABIE41_RS04935 - SDR family oxidoreductase, at 1,026,782 to 1,027,528
_RS04935
ABIE41_RS04940: ABIE41_RS04940 - beta-ketoacyl-ACP synthase, at 1,027,525 to 1,028,838
_RS04940
ABIE41_RS04945: ABIE41_RS04945 - beta-ketoacyl-ACP synthase, at 1,028,849 to 1,029,976
_RS04945
Position (kb) 1027
1028
1029 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1026.607 kb on - strand, within ABIE41_RS04930 at 1026.754 kb on + strand at 1026.754 kb on + strand at 1026.755 kb on - strand at 1026.846 kb on + strand at 1026.846 kb on + strand at 1026.846 kb on + strand at 1026.847 kb on - strand at 1026.847 kb on - strand at 1026.847 kb on - strand at 1026.967 kb on + strand, within ABIE41_RS04935 at 1026.967 kb on + strand, within ABIE41_RS04935 at 1026.967 kb on + strand, within ABIE41_RS04935 at 1026.968 kb on - strand, within ABIE41_RS04935 at 1027.048 kb on - strand, within ABIE41_RS04935 at 1027.048 kb on - strand, within ABIE41_RS04935 at 1027.078 kb on - strand, within ABIE41_RS04935 at 1027.078 kb on - strand, within ABIE41_RS04935 at 1027.078 kb on - strand, within ABIE41_RS04935 at 1027.290 kb on + strand, within ABIE41_RS04935 at 1027.434 kb on + strand, within ABIE41_RS04935 at 1027.434 kb on + strand, within ABIE41_RS04935 at 1027.434 kb on + strand, within ABIE41_RS04935 at 1027.434 kb on + strand, within ABIE41_RS04935 at 1027.670 kb on + strand, within ABIE41_RS04940 at 1027.670 kb on + strand, within ABIE41_RS04940 at 1027.671 kb on - strand, within ABIE41_RS04940 at 1027.671 kb on - strand, within ABIE41_RS04940 at 1027.671 kb on - strand, within ABIE41_RS04940 at 1027.671 kb on - strand, within ABIE41_RS04940 at 1027.671 kb on - strand, within ABIE41_RS04940 at 1027.671 kb on - strand, within ABIE41_RS04940 at 1027.671 kb on - strand, within ABIE41_RS04940 at 1027.878 kb on - strand, within ABIE41_RS04940 at 1028.852 kb on + strand at 1028.852 kb on + strand at 1028.853 kb on - strand at 1029.380 kb on + strand, within ABIE41_RS04945 at 1029.381 kb on + strand, within ABIE41_RS04945 at 1029.381 kb on + strand, within ABIE41_RS04945 at 1029.381 kb on + strand, within ABIE41_RS04945 at 1029.381 kb on + strand, within ABIE41_RS04945 at 1029.382 kb on - strand, within ABIE41_RS04945 at 1029.382 kb on - strand, within ABIE41_RS04945 at 1029.382 kb on - strand, within ABIE41_RS04945 at 1029.382 kb on - strand, within ABIE41_RS04945 at 1029.382 kb on - strand, within ABIE41_RS04945 at 1029.754 kb on - strand, within ABIE41_RS04945
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 1,026,607 - ABIE41_RS04930 0.53 -2.7 1,026,754 + -2.1 1,026,754 + -1.0 1,026,755 - +4.0 1,026,846 + -0.3 1,026,846 + -2.3 1,026,846 + -1.9 1,026,847 - -2.3 1,026,847 - -0.3 1,026,847 - -1.2 1,026,967 + ABIE41_RS04935 0.25 +0.7 1,026,967 + ABIE41_RS04935 0.25 +0.4 1,026,967 + ABIE41_RS04935 0.25 -0.1 1,026,968 - ABIE41_RS04935 0.25 +1.0 1,027,048 - ABIE41_RS04935 0.36 -1.8 1,027,048 - ABIE41_RS04935 0.36 -2.3 1,027,078 - ABIE41_RS04935 0.40 -2.7 1,027,078 - ABIE41_RS04935 0.40 +2.0 1,027,078 - ABIE41_RS04935 0.40 -0.2 1,027,290 + ABIE41_RS04935 0.68 -1.0 1,027,434 + ABIE41_RS04935 0.87 -2.9 1,027,434 + ABIE41_RS04935 0.87 -0.6 1,027,434 + ABIE41_RS04935 0.87 +0.6 1,027,434 + ABIE41_RS04935 0.87 -1.1 1,027,670 + ABIE41_RS04940 0.11 -0.6 1,027,670 + ABIE41_RS04940 0.11 -1.4 1,027,671 - ABIE41_RS04940 0.11 -1.9 1,027,671 - ABIE41_RS04940 0.11 -0.8 1,027,671 - ABIE41_RS04940 0.11 +0.4 1,027,671 - ABIE41_RS04940 0.11 +0.2 1,027,671 - ABIE41_RS04940 0.11 +0.4 1,027,671 - ABIE41_RS04940 0.11 +2.0 1,027,671 - ABIE41_RS04940 0.11 -2.2 1,027,878 - ABIE41_RS04940 0.27 +0.3 1,028,852 + +0.7 1,028,852 + -2.0 1,028,853 - -0.7 1,029,380 + ABIE41_RS04945 0.47 +2.8 1,029,381 + ABIE41_RS04945 0.47 +2.6 1,029,381 + ABIE41_RS04945 0.47 -0.4 1,029,381 + ABIE41_RS04945 0.47 -2.9 1,029,381 + ABIE41_RS04945 0.47 -1.5 1,029,382 - ABIE41_RS04945 0.47 -0.6 1,029,382 - ABIE41_RS04945 0.47 -0.7 1,029,382 - ABIE41_RS04945 0.47 +2.0 1,029,382 - ABIE41_RS04945 0.47 +3.3 1,029,382 - ABIE41_RS04945 0.47 -1.9 1,029,754 - ABIE41_RS04945 0.80 -0.9
Or see this region's nucleotide sequence