Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01580

Experiment: DMSO control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS01575 and ABIE41_RS01580 are separated by 140 nucleotidesABIE41_RS01580 and ABIE41_RS01585 are separated by 123 nucleotides ABIE41_RS01575: ABIE41_RS01575 - ABC transporter ATP-binding protein, at 313,623 to 314,666 _RS01575 ABIE41_RS01580: ABIE41_RS01580 - polyamine ABC transporter substrate-binding protein, at 314,807 to 315,844 _RS01580 ABIE41_RS01585: ABIE41_RS01585 - LysR substrate-binding domain-containing protein, at 315,968 to 316,885 _RS01585 Position (kb) 314 315 316Strain fitness (log2 ratio) -2 -1 0 1at 314.002 kb on + strand, within ABIE41_RS01575at 314.002 kb on + strand, within ABIE41_RS01575at 314.002 kb on + strand, within ABIE41_RS01575at 314.002 kb on + strand, within ABIE41_RS01575at 314.002 kb on + strand, within ABIE41_RS01575at 314.002 kb on + strand, within ABIE41_RS01575at 314.003 kb on - strand, within ABIE41_RS01575at 314.003 kb on - strand, within ABIE41_RS01575at 314.003 kb on - strand, within ABIE41_RS01575at 314.003 kb on - strand, within ABIE41_RS01575at 314.003 kb on - strand, within ABIE41_RS01575at 314.003 kb on - strand, within ABIE41_RS01575at 314.003 kb on - strand, within ABIE41_RS01575at 314.003 kb on - strand, within ABIE41_RS01575at 314.327 kb on + strand, within ABIE41_RS01575at 314.327 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.675 kb on - strandat 314.808 kb on + strandat 314.809 kb on - strandat 314.809 kb on - strandat 314.907 kb on + strandat 314.907 kb on + strandat 314.989 kb on + strand, within ABIE41_RS01580at 315.222 kb on + strand, within ABIE41_RS01580at 315.222 kb on + strand, within ABIE41_RS01580at 315.223 kb on - strand, within ABIE41_RS01580at 315.223 kb on - strand, within ABIE41_RS01580at 315.333 kb on + strand, within ABIE41_RS01580at 315.333 kb on + strand, within ABIE41_RS01580at 315.334 kb on - strand, within ABIE41_RS01580at 315.373 kb on - strand, within ABIE41_RS01580at 315.373 kb on - strand, within ABIE41_RS01580at 315.373 kb on - strand, within ABIE41_RS01580at 315.373 kb on - strand, within ABIE41_RS01580at 315.445 kb on - strand, within ABIE41_RS01580at 315.445 kb on - strand, within ABIE41_RS01580at 315.522 kb on + strand, within ABIE41_RS01580at 315.605 kb on + strand, within ABIE41_RS01580at 315.665 kb on + strand, within ABIE41_RS01580at 315.666 kb on - strand, within ABIE41_RS01580at 315.669 kb on + strand, within ABIE41_RS01580at 315.669 kb on + strand, within ABIE41_RS01580at 315.670 kb on - strand, within ABIE41_RS01580at 315.670 kb on - strand, within ABIE41_RS01580at 315.670 kb on - strand, within ABIE41_RS01580at 315.748 kb on - strandat 315.748 kb on - strandat 315.940 kb on + strandat 315.940 kb on + strandat 315.941 kb on - strandat 316.005 kb on + strandat 316.005 kb on + strandat 316.005 kb on + strandat 316.005 kb on + strandat 316.005 kb on + strandat 316.005 kb on + strandat 316.045 kb on - strandat 316.048 kb on + strandat 316.048 kb on + strandat 316.049 kb on - strandat 316.049 kb on - strandat 316.091 kb on + strand, within ABIE41_RS01585at 316.091 kb on + strand, within ABIE41_RS01585at 316.091 kb on + strand, within ABIE41_RS01585at 316.091 kb on + strand, within ABIE41_RS01585at 316.091 kb on + strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.162 kb on - strand, within ABIE41_RS01585at 316.163 kb on + strand, within ABIE41_RS01585at 316.164 kb on - strand, within ABIE41_RS01585at 316.273 kb on + strand, within ABIE41_RS01585at 316.274 kb on - strand, within ABIE41_RS01585at 316.307 kb on + strand, within ABIE41_RS01585at 316.307 kb on + strand, within ABIE41_RS01585at 316.307 kb on + strand, within ABIE41_RS01585at 316.308 kb on - strand, within ABIE41_RS01585at 316.344 kb on - strand, within ABIE41_RS01585at 316.344 kb on - strand, within ABIE41_RS01585at 316.413 kb on - strand, within ABIE41_RS01585at 316.433 kb on - strand, within ABIE41_RS01585at 316.433 kb on - strand, within ABIE41_RS01585at 316.433 kb on - strand, within ABIE41_RS01585at 316.433 kb on - strand, within ABIE41_RS01585at 316.697 kb on + strand, within ABIE41_RS01585at 316.760 kb on + strand, within ABIE41_RS01585at 316.760 kb on + strand, within ABIE41_RS01585at 316.760 kb on + strand, within ABIE41_RS01585at 316.760 kb on + strand, within ABIE41_RS01585at 316.760 kb on + strand, within ABIE41_RS01585

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
remove
314,002 + ABIE41_RS01575 0.36 +0.2
314,002 + ABIE41_RS01575 0.36 +0.1
314,002 + ABIE41_RS01575 0.36 -1.2
314,002 + ABIE41_RS01575 0.36 +0.4
314,002 + ABIE41_RS01575 0.36 -1.0
314,002 + ABIE41_RS01575 0.36 +0.6
314,003 - ABIE41_RS01575 0.36 -2.4
314,003 - ABIE41_RS01575 0.36 +1.4
314,003 - ABIE41_RS01575 0.36 +1.2
314,003 - ABIE41_RS01575 0.36 +0.7
314,003 - ABIE41_RS01575 0.36 +1.6
314,003 - ABIE41_RS01575 0.36 +1.0
314,003 - ABIE41_RS01575 0.36 +1.0
314,003 - ABIE41_RS01575 0.36 -0.1
314,327 + ABIE41_RS01575 0.67 +0.3
314,327 + ABIE41_RS01575 0.67 +0.4
314,416 + ABIE41_RS01575 0.76 +1.3
314,416 + ABIE41_RS01575 0.76 +0.3
314,416 + ABIE41_RS01575 0.76 -0.3
314,416 + ABIE41_RS01575 0.76 -0.1
314,416 + ABIE41_RS01575 0.76 -0.2
314,416 + ABIE41_RS01575 0.76 +0.2
314,416 + ABIE41_RS01575 0.76 +1.2
314,416 + ABIE41_RS01575 0.76 -1.6
314,416 + ABIE41_RS01575 0.76 -0.3
314,675 - +0.4
314,808 + +1.0
314,809 - +0.9
314,809 - +0.6
314,907 + -0.0
314,907 + +0.2
314,989 + ABIE41_RS01580 0.18 +0.3
315,222 + ABIE41_RS01580 0.40 +1.2
315,222 + ABIE41_RS01580 0.40 +0.0
315,223 - ABIE41_RS01580 0.40 -1.2
315,223 - ABIE41_RS01580 0.40 -1.5
315,333 + ABIE41_RS01580 0.51 +0.4
315,333 + ABIE41_RS01580 0.51 +0.4
315,334 - ABIE41_RS01580 0.51 -1.3
315,373 - ABIE41_RS01580 0.55 +0.2
315,373 - ABIE41_RS01580 0.55 -1.2
315,373 - ABIE41_RS01580 0.55 +0.6
315,373 - ABIE41_RS01580 0.55 +0.3
315,445 - ABIE41_RS01580 0.61 +0.5
315,445 - ABIE41_RS01580 0.61 +0.3
315,522 + ABIE41_RS01580 0.69 -1.0
315,605 + ABIE41_RS01580 0.77 +0.1
315,665 + ABIE41_RS01580 0.83 -0.6
315,666 - ABIE41_RS01580 0.83 +0.1
315,669 + ABIE41_RS01580 0.83 +0.9
315,669 + ABIE41_RS01580 0.83 +0.3
315,670 - ABIE41_RS01580 0.83 +0.4
315,670 - ABIE41_RS01580 0.83 +0.5
315,670 - ABIE41_RS01580 0.83 -0.4
315,748 - +1.2
315,748 - +0.1
315,940 + -0.4
315,940 + -2.2
315,941 - +0.0
316,005 + +0.3
316,005 + +0.2
316,005 + +0.2
316,005 + -0.1
316,005 + -0.1
316,005 + +0.3
316,045 - +0.3
316,048 + +0.9
316,048 + -0.5
316,049 - -1.8
316,049 - -0.3
316,091 + ABIE41_RS01585 0.13 -1.3
316,091 + ABIE41_RS01585 0.13 +1.1
316,091 + ABIE41_RS01585 0.13 -0.0
316,091 + ABIE41_RS01585 0.13 +0.9
316,091 + ABIE41_RS01585 0.13 -2.6
316,092 - ABIE41_RS01585 0.14 +0.2
316,092 - ABIE41_RS01585 0.14 +0.8
316,092 - ABIE41_RS01585 0.14 +0.9
316,092 - ABIE41_RS01585 0.14 -0.4
316,092 - ABIE41_RS01585 0.14 +1.3
316,092 - ABIE41_RS01585 0.14 -0.5
316,162 - ABIE41_RS01585 0.21 +0.3
316,163 + ABIE41_RS01585 0.21 -1.1
316,164 - ABIE41_RS01585 0.21 +0.1
316,273 + ABIE41_RS01585 0.33 -0.5
316,274 - ABIE41_RS01585 0.33 -0.6
316,307 + ABIE41_RS01585 0.37 -0.3
316,307 + ABIE41_RS01585 0.37 +1.0
316,307 + ABIE41_RS01585 0.37 +0.6
316,308 - ABIE41_RS01585 0.37 -1.1
316,344 - ABIE41_RS01585 0.41 -0.1
316,344 - ABIE41_RS01585 0.41 +1.0
316,413 - ABIE41_RS01585 0.48 -1.4
316,433 - ABIE41_RS01585 0.51 +1.0
316,433 - ABIE41_RS01585 0.51 +0.7
316,433 - ABIE41_RS01585 0.51 +0.2
316,433 - ABIE41_RS01585 0.51 -0.7
316,697 + ABIE41_RS01585 0.79 -0.2
316,760 + ABIE41_RS01585 0.86 +0.3
316,760 + ABIE41_RS01585 0.86 +0.6
316,760 + ABIE41_RS01585 0.86 -0.0
316,760 + ABIE41_RS01585 0.86 -0.4
316,760 + ABIE41_RS01585 0.86 -0.0

Or see this region's nucleotide sequence