Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01365

Experiment: DMSO control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS01360 and ABIE41_RS01365 are separated by 19 nucleotidesABIE41_RS01365 and ABIE41_RS01370 are separated by 5 nucleotides ABIE41_RS01360: ABIE41_RS01360 - sialic acid TRAP transporter substrate-binding protein SiaP, at 268,961 to 269,935 _RS01360 ABIE41_RS01365: ABIE41_RS01365 - TRAP transporter small permease, at 269,955 to 270,530 _RS01365 ABIE41_RS01370: ABIE41_RS01370 - TRAP transporter large permease, at 270,536 to 271,930 _RS01370 Position (kb) 269 270 271Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 269.051 kb on + strandat 269.051 kb on + strandat 269.051 kb on + strandat 269.051 kb on + strandat 269.051 kb on + strandat 269.052 kb on - strandat 269.052 kb on - strandat 269.057 kb on + strandat 269.058 kb on - strandat 269.132 kb on + strand, within ABIE41_RS01360at 269.133 kb on - strand, within ABIE41_RS01360at 269.133 kb on - strand, within ABIE41_RS01360at 269.147 kb on + strand, within ABIE41_RS01360at 269.147 kb on + strand, within ABIE41_RS01360at 269.148 kb on - strand, within ABIE41_RS01360at 269.270 kb on + strand, within ABIE41_RS01360at 269.270 kb on + strand, within ABIE41_RS01360at 269.270 kb on + strand, within ABIE41_RS01360at 269.270 kb on + strand, within ABIE41_RS01360at 269.271 kb on - strand, within ABIE41_RS01360at 269.271 kb on - strand, within ABIE41_RS01360at 269.271 kb on - strand, within ABIE41_RS01360at 269.312 kb on + strand, within ABIE41_RS01360at 269.313 kb on - strand, within ABIE41_RS01360at 269.331 kb on - strand, within ABIE41_RS01360at 269.331 kb on - strand, within ABIE41_RS01360at 269.331 kb on - strand, within ABIE41_RS01360at 269.351 kb on + strand, within ABIE41_RS01360at 269.352 kb on - strand, within ABIE41_RS01360at 269.390 kb on + strand, within ABIE41_RS01360at 269.390 kb on + strand, within ABIE41_RS01360at 269.483 kb on + strand, within ABIE41_RS01360at 269.483 kb on + strand, within ABIE41_RS01360at 269.483 kb on + strand, within ABIE41_RS01360at 269.483 kb on + strand, within ABIE41_RS01360at 269.483 kb on + strand, within ABIE41_RS01360at 269.483 kb on + strand, within ABIE41_RS01360at 269.484 kb on - strand, within ABIE41_RS01360at 269.484 kb on - strand, within ABIE41_RS01360at 269.484 kb on - strand, within ABIE41_RS01360at 269.484 kb on - strand, within ABIE41_RS01360at 269.485 kb on + strand, within ABIE41_RS01360at 269.485 kb on + strand, within ABIE41_RS01360at 269.486 kb on - strand, within ABIE41_RS01360at 269.486 kb on - strand, within ABIE41_RS01360at 269.486 kb on - strand, within ABIE41_RS01360at 269.486 kb on - strand, within ABIE41_RS01360at 269.543 kb on + strand, within ABIE41_RS01360at 269.544 kb on - strand, within ABIE41_RS01360at 269.830 kb on + strand, within ABIE41_RS01360at 269.831 kb on - strand, within ABIE41_RS01360at 269.950 kb on + strandat 269.950 kb on + strandat 269.950 kb on + strandat 269.950 kb on + strandat 269.950 kb on + strandat 269.951 kb on - strandat 269.951 kb on - strandat 269.951 kb on - strandat 269.951 kb on - strandat 270.048 kb on + strand, within ABIE41_RS01365at 270.049 kb on - strand, within ABIE41_RS01365at 270.049 kb on - strand, within ABIE41_RS01365at 270.126 kb on + strand, within ABIE41_RS01365at 270.126 kb on + strand, within ABIE41_RS01365at 270.126 kb on + strand, within ABIE41_RS01365at 270.127 kb on - strand, within ABIE41_RS01365at 270.127 kb on - strand, within ABIE41_RS01365at 270.127 kb on - strand, within ABIE41_RS01365at 270.171 kb on + strand, within ABIE41_RS01365at 270.172 kb on - strand, within ABIE41_RS01365at 270.230 kb on + strand, within ABIE41_RS01365at 270.230 kb on + strand, within ABIE41_RS01365at 270.230 kb on + strand, within ABIE41_RS01365at 270.231 kb on - strand, within ABIE41_RS01365at 270.249 kb on + strand, within ABIE41_RS01365at 270.250 kb on - strand, within ABIE41_RS01365at 270.318 kb on + strand, within ABIE41_RS01365at 270.324 kb on + strand, within ABIE41_RS01365at 270.408 kb on + strand, within ABIE41_RS01365at 270.408 kb on + strand, within ABIE41_RS01365at 270.408 kb on + strand, within ABIE41_RS01365at 270.408 kb on + strand, within ABIE41_RS01365at 270.408 kb on + strand, within ABIE41_RS01365at 270.409 kb on - strand, within ABIE41_RS01365at 270.409 kb on - strand, within ABIE41_RS01365at 270.409 kb on - strand, within ABIE41_RS01365at 270.409 kb on - strand, within ABIE41_RS01365at 270.486 kb on + strandat 270.486 kb on + strandat 270.486 kb on + strandat 270.487 kb on - strandat 270.617 kb on + strandat 270.617 kb on + strandat 270.618 kb on - strandat 270.618 kb on - strandat 270.761 kb on + strand, within ABIE41_RS01370at 270.762 kb on - strand, within ABIE41_RS01370at 270.762 kb on - strand, within ABIE41_RS01370at 270.917 kb on + strand, within ABIE41_RS01370at 270.918 kb on - strand, within ABIE41_RS01370at 271.100 kb on + strand, within ABIE41_RS01370at 271.100 kb on + strand, within ABIE41_RS01370at 271.101 kb on - strand, within ABIE41_RS01370at 271.101 kb on - strand, within ABIE41_RS01370

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
remove
269,051 + +0.2
269,051 + -0.6
269,051 + -0.2
269,051 + -1.1
269,051 + -0.2
269,052 - -1.1
269,052 - -1.0
269,057 + -0.2
269,058 - -1.3
269,132 + ABIE41_RS01360 0.18 +3.3
269,133 - ABIE41_RS01360 0.18 -0.3
269,133 - ABIE41_RS01360 0.18 +1.7
269,147 + ABIE41_RS01360 0.19 +0.4
269,147 + ABIE41_RS01360 0.19 -0.6
269,148 - ABIE41_RS01360 0.19 -0.2
269,270 + ABIE41_RS01360 0.32 -0.7
269,270 + ABIE41_RS01360 0.32 -0.0
269,270 + ABIE41_RS01360 0.32 -0.3
269,270 + ABIE41_RS01360 0.32 -0.4
269,271 - ABIE41_RS01360 0.32 -0.4
269,271 - ABIE41_RS01360 0.32 +2.0
269,271 - ABIE41_RS01360 0.32 -0.4
269,312 + ABIE41_RS01360 0.36 -0.3
269,313 - ABIE41_RS01360 0.36 +0.3
269,331 - ABIE41_RS01360 0.38 -0.1
269,331 - ABIE41_RS01360 0.38 -0.1
269,331 - ABIE41_RS01360 0.38 -1.6
269,351 + ABIE41_RS01360 0.40 +0.4
269,352 - ABIE41_RS01360 0.40 +2.0
269,390 + ABIE41_RS01360 0.44 +0.5
269,390 + ABIE41_RS01360 0.44 +1.6
269,483 + ABIE41_RS01360 0.54 -0.9
269,483 + ABIE41_RS01360 0.54 +1.3
269,483 + ABIE41_RS01360 0.54 -0.3
269,483 + ABIE41_RS01360 0.54 -0.2
269,483 + ABIE41_RS01360 0.54 +0.4
269,483 + ABIE41_RS01360 0.54 -0.7
269,484 - ABIE41_RS01360 0.54 -1.8
269,484 - ABIE41_RS01360 0.54 +0.5
269,484 - ABIE41_RS01360 0.54 +0.2
269,484 - ABIE41_RS01360 0.54 -2.8
269,485 + ABIE41_RS01360 0.54 +0.5
269,485 + ABIE41_RS01360 0.54 -1.0
269,486 - ABIE41_RS01360 0.54 -0.2
269,486 - ABIE41_RS01360 0.54 -0.8
269,486 - ABIE41_RS01360 0.54 -0.6
269,486 - ABIE41_RS01360 0.54 -0.6
269,543 + ABIE41_RS01360 0.60 +1.5
269,544 - ABIE41_RS01360 0.60 +0.3
269,830 + ABIE41_RS01360 0.89 +0.5
269,831 - ABIE41_RS01360 0.89 -0.8
269,950 + -0.1
269,950 + +0.3
269,950 + -0.3
269,950 + -0.0
269,950 + -0.6
269,951 - -0.2
269,951 - +1.5
269,951 - -0.1
269,951 - +1.4
270,048 + ABIE41_RS01365 0.16 +0.7
270,049 - ABIE41_RS01365 0.16 +0.2
270,049 - ABIE41_RS01365 0.16 -1.4
270,126 + ABIE41_RS01365 0.30 -0.2
270,126 + ABIE41_RS01365 0.30 -1.7
270,126 + ABIE41_RS01365 0.30 -1.8
270,127 - ABIE41_RS01365 0.30 +0.0
270,127 - ABIE41_RS01365 0.30 +0.4
270,127 - ABIE41_RS01365 0.30 -1.5
270,171 + ABIE41_RS01365 0.38 -0.6
270,172 - ABIE41_RS01365 0.38 +0.8
270,230 + ABIE41_RS01365 0.48 -1.6
270,230 + ABIE41_RS01365 0.48 +0.3
270,230 + ABIE41_RS01365 0.48 +0.8
270,231 - ABIE41_RS01365 0.48 -0.1
270,249 + ABIE41_RS01365 0.51 +1.0
270,250 - ABIE41_RS01365 0.51 +0.9
270,318 + ABIE41_RS01365 0.63 -0.5
270,324 + ABIE41_RS01365 0.64 +0.1
270,408 + ABIE41_RS01365 0.79 +1.7
270,408 + ABIE41_RS01365 0.79 +0.4
270,408 + ABIE41_RS01365 0.79 -2.2
270,408 + ABIE41_RS01365 0.79 +2.0
270,408 + ABIE41_RS01365 0.79 +0.9
270,409 - ABIE41_RS01365 0.79 +0.1
270,409 - ABIE41_RS01365 0.79 -1.9
270,409 - ABIE41_RS01365 0.79 +1.0
270,409 - ABIE41_RS01365 0.79 +1.3
270,486 + +2.2
270,486 + -0.2
270,486 + +0.1
270,487 - +0.1
270,617 + +3.4
270,617 + -0.8
270,618 - -0.1
270,618 - -1.6
270,761 + ABIE41_RS01370 0.16 -0.2
270,762 - ABIE41_RS01370 0.16 -0.3
270,762 - ABIE41_RS01370 0.16 -0.7
270,917 + ABIE41_RS01370 0.27 +1.0
270,918 - ABIE41_RS01370 0.27 -1.4
271,100 + ABIE41_RS01370 0.40 -1.2
271,100 + ABIE41_RS01370 0.40 +0.3
271,101 - ABIE41_RS01370 0.41 -0.0
271,101 - ABIE41_RS01370 0.41 -0.3

Or see this region's nucleotide sequence