Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS00755 and ABIE41_RS00760 overlap by 12 nucleotides ABIE41_RS00760 and ABIE41_RS00765 are separated by 189 nucleotides ABIE41_RS00765 and ABIE41_RS00770 are separated by 692 nucleotides
ABIE41_RS00755: ABIE41_RS00755 - plasmid pRiA4b ORF-3 family protein, at 143,485 to 144,117
_RS00755
ABIE41_RS00760: ABIE41_RS00760 - hypothetical protein, at 144,106 to 144,411
_RS00760
ABIE41_RS00765: ABIE41_RS00765 - hypothetical protein, at 144,601 to 144,864
_RS00765
ABIE41_RS00770: ABIE41_RS00770 - caspase family protein, at 145,557 to 147,623
_RS00770
Position (kb) 144
145 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 143.641 kb on + strand, within ABIE41_RS00755 at 143.641 kb on + strand, within ABIE41_RS00755 at 143.641 kb on + strand, within ABIE41_RS00755 at 143.641 kb on + strand, within ABIE41_RS00755 at 143.641 kb on + strand, within ABIE41_RS00755 at 143.641 kb on + strand, within ABIE41_RS00755 at 143.641 kb on + strand, within ABIE41_RS00755 at 143.641 kb on + strand, within ABIE41_RS00755 at 143.642 kb on - strand, within ABIE41_RS00755 at 143.642 kb on - strand, within ABIE41_RS00755 at 143.642 kb on - strand, within ABIE41_RS00755 at 143.642 kb on - strand, within ABIE41_RS00755 at 143.642 kb on - strand, within ABIE41_RS00755 at 143.642 kb on - strand, within ABIE41_RS00755 at 143.642 kb on - strand, within ABIE41_RS00755 at 143.642 kb on - strand, within ABIE41_RS00755 at 143.785 kb on + strand, within ABIE41_RS00755 at 143.785 kb on + strand, within ABIE41_RS00755 at 143.785 kb on + strand, within ABIE41_RS00755 at 143.785 kb on + strand, within ABIE41_RS00755 at 143.786 kb on - strand, within ABIE41_RS00755 at 143.786 kb on - strand, within ABIE41_RS00755 at 143.791 kb on + strand, within ABIE41_RS00755 at 143.791 kb on + strand, within ABIE41_RS00755 at 143.791 kb on + strand, within ABIE41_RS00755 at 143.791 kb on + strand, within ABIE41_RS00755 at 143.791 kb on + strand, within ABIE41_RS00755 at 143.792 kb on - strand, within ABIE41_RS00755 at 143.792 kb on - strand, within ABIE41_RS00755 at 143.792 kb on - strand, within ABIE41_RS00755 at 143.792 kb on - strand, within ABIE41_RS00755 at 143.792 kb on - strand, within ABIE41_RS00755 at 143.792 kb on - strand, within ABIE41_RS00755 at 143.792 kb on - strand, within ABIE41_RS00755 at 143.792 kb on - strand, within ABIE41_RS00755 at 144.105 kb on - strand at 144.139 kb on - strand, within ABIE41_RS00760 at 144.153 kb on + strand, within ABIE41_RS00760 at 144.154 kb on - strand, within ABIE41_RS00760 at 144.154 kb on - strand, within ABIE41_RS00760 at 144.161 kb on + strand, within ABIE41_RS00760 at 144.161 kb on + strand, within ABIE41_RS00760 at 144.178 kb on + strand, within ABIE41_RS00760 at 144.178 kb on + strand, within ABIE41_RS00760 at 144.179 kb on - strand, within ABIE41_RS00760 at 144.285 kb on + strand, within ABIE41_RS00760 at 144.285 kb on + strand, within ABIE41_RS00760 at 144.285 kb on + strand, within ABIE41_RS00760 at 144.285 kb on + strand, within ABIE41_RS00760 at 144.286 kb on - strand, within ABIE41_RS00760 at 144.306 kb on + strand, within ABIE41_RS00760 at 144.306 kb on + strand, within ABIE41_RS00760 at 144.306 kb on + strand, within ABIE41_RS00760 at 144.307 kb on - strand, within ABIE41_RS00760 at 144.307 kb on - strand, within ABIE41_RS00760 at 144.307 kb on - strand, within ABIE41_RS00760 at 144.307 kb on - strand, within ABIE41_RS00760 at 144.382 kb on + strand at 144.382 kb on + strand at 144.383 kb on - strand at 144.397 kb on + strand at 144.398 kb on - strand at 144.417 kb on + strand at 144.417 kb on + strand at 144.480 kb on + strand at 144.480 kb on + strand at 144.480 kb on + strand at 144.481 kb on - strand at 144.481 kb on - strand at 144.517 kb on + strand at 144.517 kb on + strand at 144.517 kb on + strand at 144.517 kb on + strand at 144.517 kb on + strand at 144.518 kb on - strand at 144.518 kb on - strand at 144.518 kb on - strand at 144.529 kb on + strand at 144.553 kb on + strand at 144.553 kb on + strand at 144.554 kb on - strand at 144.560 kb on + strand at 144.561 kb on - strand at 144.561 kb on - strand at 144.717 kb on + strand, within ABIE41_RS00765 at 144.717 kb on + strand, within ABIE41_RS00765 at 144.718 kb on - strand, within ABIE41_RS00765 at 144.718 kb on - strand, within ABIE41_RS00765 at 144.718 kb on - strand, within ABIE41_RS00765 at 144.718 kb on - strand, within ABIE41_RS00765 at 144.740 kb on + strand, within ABIE41_RS00765 at 144.740 kb on + strand, within ABIE41_RS00765 at 144.741 kb on - strand, within ABIE41_RS00765 at 144.904 kb on - strand at 144.947 kb on + strand at 144.948 kb on - strand at 144.990 kb on + strand at 144.991 kb on - strand at 145.004 kb on + strand at 145.004 kb on + strand at 145.005 kb on - strand at 145.097 kb on + strand at 145.097 kb on + strand at 145.098 kb on - strand at 145.123 kb on + strand at 145.123 kb on + strand at 145.124 kb on - strand at 145.166 kb on + strand at 145.166 kb on + strand at 145.166 kb on + strand at 145.166 kb on + strand at 145.166 kb on + strand at 145.166 kb on + strand at 145.166 kb on + strand at 145.166 kb on + strand at 145.166 kb on + strand at 145.166 kb on + strand at 145.166 kb on + strand at 145.166 kb on + strand at 145.166 kb on + strand at 145.167 kb on - strand at 145.167 kb on - strand at 145.167 kb on - strand at 145.167 kb on - strand at 145.167 kb on - strand at 145.167 kb on - strand at 145.167 kb on - strand at 145.167 kb on - strand at 145.167 kb on - strand at 145.167 kb on - strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.169 kb on - strand at 145.169 kb on - strand at 145.169 kb on - strand at 145.169 kb on - strand at 145.169 kb on - strand at 145.169 kb on - strand at 145.171 kb on - strand at 145.182 kb on + strand at 145.182 kb on + strand at 145.182 kb on + strand at 145.183 kb on - strand at 145.200 kb on + strand at 145.247 kb on + strand at 145.247 kb on + strand at 145.247 kb on + strand at 145.247 kb on + strand at 145.247 kb on + strand at 145.247 kb on + strand at 145.247 kb on + strand at 145.247 kb on + strand at 145.248 kb on - strand at 145.248 kb on - strand at 145.248 kb on - strand at 145.248 kb on - strand at 145.248 kb on - strand at 145.248 kb on - strand at 145.248 kb on - strand at 145.248 kb on - strand at 145.248 kb on - strand at 145.248 kb on - strand at 145.248 kb on - strand at 145.301 kb on + strand at 145.301 kb on + strand at 145.301 kb on + strand at 145.301 kb on + strand at 145.302 kb on - strand at 145.302 kb on - strand at 145.302 kb on - strand at 145.343 kb on + strand at 145.343 kb on + strand at 145.343 kb on + strand at 145.343 kb on + strand at 145.344 kb on - strand at 145.344 kb on - strand at 145.344 kb on - strand at 145.344 kb on - strand at 145.344 kb on - strand at 145.390 kb on - strand at 145.405 kb on + strand at 145.405 kb on + strand at 145.406 kb on - strand at 145.406 kb on - strand at 145.439 kb on + strand at 145.439 kb on + strand at 145.508 kb on - strand at 145.508 kb on - strand at 145.580 kb on + strand at 145.580 kb on + strand at 145.580 kb on + strand at 145.580 kb on + strand at 145.580 kb on + strand at 145.581 kb on - strand at 145.581 kb on - strand at 145.581 kb on - strand at 145.581 kb on - strand at 145.581 kb on - strand at 145.581 kb on - strand at 145.581 kb on - strand at 145.584 kb on + strand at 145.584 kb on + strand at 145.584 kb on + strand at 145.584 kb on + strand at 145.584 kb on + strand at 145.584 kb on + strand at 145.584 kb on + strand at 145.585 kb on - strand at 145.585 kb on - strand at 145.585 kb on - strand at 145.585 kb on - strand at 145.621 kb on + strand at 145.621 kb on + strand at 145.622 kb on - strand at 145.622 kb on - strand at 145.622 kb on - strand at 145.622 kb on - strand at 145.655 kb on + strand at 145.656 kb on - strand at 145.681 kb on + strand at 145.681 kb on + strand at 145.690 kb on + strand at 145.690 kb on + strand at 145.691 kb on - strand at 145.691 kb on - strand at 145.691 kb on - strand at 145.701 kb on + strand at 145.726 kb on + strand at 145.726 kb on + strand at 145.726 kb on + strand at 145.726 kb on + strand at 145.726 kb on + strand at 145.726 kb on + strand at 145.727 kb on - strand at 145.727 kb on - strand at 145.727 kb on - strand at 145.727 kb on - strand at 145.727 kb on - strand at 145.783 kb on + strand, within ABIE41_RS00770 at 145.783 kb on + strand, within ABIE41_RS00770 at 145.783 kb on + strand, within ABIE41_RS00770 at 145.783 kb on + strand, within ABIE41_RS00770 at 145.783 kb on + strand, within ABIE41_RS00770 at 145.783 kb on + strand, within ABIE41_RS00770 at 145.783 kb on + strand, within ABIE41_RS00770 at 145.783 kb on + strand, within ABIE41_RS00770 at 145.783 kb on + strand, within ABIE41_RS00770 at 145.783 kb on + strand, within ABIE41_RS00770 at 145.783 kb on + strand, within ABIE41_RS00770 at 145.783 kb on + strand, within ABIE41_RS00770 at 145.783 kb on + strand, within ABIE41_RS00770 at 145.783 kb on + strand, within ABIE41_RS00770 at 145.783 kb on + strand, within ABIE41_RS00770 at 145.784 kb on - strand, within ABIE41_RS00770 at 145.784 kb on - strand, within ABIE41_RS00770 at 145.784 kb on - strand, within ABIE41_RS00770 at 145.784 kb on - strand, within ABIE41_RS00770 at 145.784 kb on - strand, within ABIE41_RS00770 at 145.784 kb on - strand, within ABIE41_RS00770 at 145.784 kb on - strand, within ABIE41_RS00770 at 145.784 kb on - strand, within ABIE41_RS00770 at 145.784 kb on - strand, within ABIE41_RS00770 at 145.785 kb on - strand, within ABIE41_RS00770 at 145.793 kb on + strand, within ABIE41_RS00770 at 145.812 kb on + strand, within ABIE41_RS00770 at 145.812 kb on + strand, within ABIE41_RS00770 at 145.812 kb on + strand, within ABIE41_RS00770 at 145.812 kb on + strand, within ABIE41_RS00770 at 145.834 kb on + strand, within ABIE41_RS00770 at 145.834 kb on + strand, within ABIE41_RS00770 at 145.834 kb on + strand, within ABIE41_RS00770 at 145.835 kb on - strand, within ABIE41_RS00770 at 145.835 kb on - strand, within ABIE41_RS00770 at 145.840 kb on + strand, within ABIE41_RS00770 at 145.840 kb on + strand, within ABIE41_RS00770 at 145.840 kb on + strand, within ABIE41_RS00770 at 145.840 kb on + strand, within ABIE41_RS00770 at 145.840 kb on + strand, within ABIE41_RS00770 at 145.841 kb on - strand, within ABIE41_RS00770
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 143,641 + ABIE41_RS00755 0.25 +0.0 143,641 + ABIE41_RS00755 0.25 -0.8 143,641 + ABIE41_RS00755 0.25 -0.9 143,641 + ABIE41_RS00755 0.25 +0.5 143,641 + ABIE41_RS00755 0.25 -0.6 143,641 + ABIE41_RS00755 0.25 -0.8 143,641 + ABIE41_RS00755 0.25 -0.1 143,641 + ABIE41_RS00755 0.25 -0.3 143,642 - ABIE41_RS00755 0.25 -1.3 143,642 - ABIE41_RS00755 0.25 +0.2 143,642 - ABIE41_RS00755 0.25 +0.6 143,642 - ABIE41_RS00755 0.25 -1.4 143,642 - ABIE41_RS00755 0.25 -0.1 143,642 - ABIE41_RS00755 0.25 +0.2 143,642 - ABIE41_RS00755 0.25 +0.8 143,642 - ABIE41_RS00755 0.25 +0.1 143,785 + ABIE41_RS00755 0.47 -0.5 143,785 + ABIE41_RS00755 0.47 +0.5 143,785 + ABIE41_RS00755 0.47 +0.4 143,785 + ABIE41_RS00755 0.47 +1.1 143,786 - ABIE41_RS00755 0.48 +0.3 143,786 - ABIE41_RS00755 0.48 +0.6 143,791 + ABIE41_RS00755 0.48 -0.1 143,791 + ABIE41_RS00755 0.48 +0.2 143,791 + ABIE41_RS00755 0.48 +0.6 143,791 + ABIE41_RS00755 0.48 -0.3 143,791 + ABIE41_RS00755 0.48 +1.1 143,792 - ABIE41_RS00755 0.48 +3.3 143,792 - ABIE41_RS00755 0.48 -0.0 143,792 - ABIE41_RS00755 0.48 -0.1 143,792 - ABIE41_RS00755 0.48 +0.7 143,792 - ABIE41_RS00755 0.48 -0.1 143,792 - ABIE41_RS00755 0.48 -0.3 143,792 - ABIE41_RS00755 0.48 +0.8 143,792 - ABIE41_RS00755 0.48 +0.4 144,105 - -0.4 144,139 - ABIE41_RS00760 0.11 -0.7 144,153 + ABIE41_RS00760 0.15 -0.5 144,154 - ABIE41_RS00760 0.16 -0.0 144,154 - ABIE41_RS00760 0.16 +0.8 144,161 + ABIE41_RS00760 0.18 -0.8 144,161 + ABIE41_RS00760 0.18 -0.2 144,178 + ABIE41_RS00760 0.24 -0.0 144,178 + ABIE41_RS00760 0.24 +0.2 144,179 - ABIE41_RS00760 0.24 -0.6 144,285 + ABIE41_RS00760 0.58 -2.9 144,285 + ABIE41_RS00760 0.58 +0.1 144,285 + ABIE41_RS00760 0.58 -0.2 144,285 + ABIE41_RS00760 0.58 -0.0 144,286 - ABIE41_RS00760 0.59 -1.7 144,306 + ABIE41_RS00760 0.65 -1.9 144,306 + ABIE41_RS00760 0.65 +0.2 144,306 + ABIE41_RS00760 0.65 -0.1 144,307 - ABIE41_RS00760 0.66 -1.0 144,307 - ABIE41_RS00760 0.66 +0.9 144,307 - ABIE41_RS00760 0.66 +0.4 144,307 - ABIE41_RS00760 0.66 +0.1 144,382 + +0.2 144,382 + -1.1 144,383 - -0.4 144,397 + +0.7 144,398 - -1.3 144,417 + +1.9 144,417 + -1.2 144,480 + -0.5 144,480 + +0.6 144,480 + -1.7 144,481 - -0.4 144,481 - -0.3 144,517 + -0.1 144,517 + -0.2 144,517 + -0.5 144,517 + -2.4 144,517 + +0.3 144,518 - +1.0 144,518 - +0.2 144,518 - +0.2 144,529 + +0.2 144,553 + +1.2 144,553 + -0.8 144,554 - -0.4 144,560 + -0.3 144,561 - +0.1 144,561 - -0.0 144,717 + ABIE41_RS00765 0.44 -2.3 144,717 + ABIE41_RS00765 0.44 -0.2 144,718 - ABIE41_RS00765 0.44 -0.7 144,718 - ABIE41_RS00765 0.44 -1.2 144,718 - ABIE41_RS00765 0.44 +0.1 144,718 - ABIE41_RS00765 0.44 -2.5 144,740 + ABIE41_RS00765 0.53 -1.9 144,740 + ABIE41_RS00765 0.53 +0.6 144,741 - ABIE41_RS00765 0.53 -1.2 144,904 - +1.3 144,947 + +0.5 144,948 - -0.2 144,990 + +2.3 144,991 - +0.6 145,004 + -0.8 145,004 + -0.0 145,005 - +0.3 145,097 + -0.3 145,097 + +0.7 145,098 - +3.0 145,123 + -1.2 145,123 + -0.1 145,124 - -1.7 145,166 + +0.1 145,166 + -1.2 145,166 + -0.0 145,166 + -1.7 145,166 + +0.0 145,166 + -0.9 145,166 + -0.9 145,166 + +1.2 145,166 + -0.0 145,166 + +2.1 145,166 + -0.4 145,166 + -0.6 145,166 + +1.8 145,167 - +0.2 145,167 - +0.1 145,167 - -0.0 145,167 - -0.4 145,167 - -0.1 145,167 - -0.3 145,167 - +0.2 145,167 - -1.3 145,167 - -0.2 145,167 - -0.9 145,168 + +0.2 145,168 + -1.1 145,168 + +0.5 145,168 + +0.1 145,168 + -0.7 145,168 + -0.8 145,168 + -0.7 145,168 + -0.5 145,169 - -0.2 145,169 - +1.3 145,169 - +0.2 145,169 - +0.4 145,169 - +0.3 145,169 - -0.0 145,171 - -1.7 145,182 + +0.7 145,182 + +0.1 145,182 + +0.0 145,183 - +0.0 145,200 + -0.7 145,247 + -0.5 145,247 + -0.7 145,247 + -0.0 145,247 + +0.9 145,247 + +0.0 145,247 + +1.0 145,247 + +0.3 145,247 + +0.4 145,248 - +0.2 145,248 - -0.2 145,248 - +0.1 145,248 - +0.1 145,248 - -0.2 145,248 - -0.3 145,248 - +0.0 145,248 - -0.5 145,248 - +1.5 145,248 - +0.1 145,248 - +0.2 145,301 + -0.2 145,301 + +0.6 145,301 + -0.7 145,301 + +0.1 145,302 - -0.6 145,302 - +2.0 145,302 - -0.4 145,343 + +0.4 145,343 + +0.9 145,343 + -0.8 145,343 + -0.1 145,344 - +1.0 145,344 - -0.3 145,344 - +0.1 145,344 - +0.5 145,344 - -1.3 145,390 - -2.0 145,405 + -0.1 145,405 + -1.4 145,406 - +0.0 145,406 - -1.2 145,439 + -0.1 145,439 + +0.3 145,508 - +0.8 145,508 - +0.9 145,580 + +0.1 145,580 + +0.2 145,580 + +0.4 145,580 + +0.5 145,580 + -1.1 145,581 - -1.6 145,581 - +0.4 145,581 - +0.5 145,581 - +0.4 145,581 - +0.3 145,581 - +0.3 145,581 - -0.1 145,584 + +0.3 145,584 + +0.0 145,584 + +0.7 145,584 + +0.2 145,584 + -0.3 145,584 + -0.1 145,584 + -0.6 145,585 - +0.4 145,585 - +0.4 145,585 - -0.4 145,585 - +0.6 145,621 + +0.5 145,621 + -0.1 145,622 - +0.1 145,622 - -0.1 145,622 - -0.5 145,622 - +0.3 145,655 + -1.0 145,656 - +0.3 145,681 + -1.1 145,681 + +0.2 145,690 + +2.9 145,690 + -0.3 145,691 - -0.6 145,691 - -0.6 145,691 - -0.3 145,701 + -0.5 145,726 + +0.4 145,726 + -0.1 145,726 + -1.1 145,726 + -0.1 145,726 + -0.3 145,726 + -0.1 145,727 - -2.3 145,727 - -1.2 145,727 - +0.4 145,727 - +0.1 145,727 - -2.3 145,783 + ABIE41_RS00770 0.11 -0.2 145,783 + ABIE41_RS00770 0.11 -0.5 145,783 + ABIE41_RS00770 0.11 -0.5 145,783 + ABIE41_RS00770 0.11 +0.4 145,783 + ABIE41_RS00770 0.11 -0.2 145,783 + ABIE41_RS00770 0.11 -0.3 145,783 + ABIE41_RS00770 0.11 +1.7 145,783 + ABIE41_RS00770 0.11 +2.4 145,783 + ABIE41_RS00770 0.11 +1.1 145,783 + ABIE41_RS00770 0.11 -2.3 145,783 + ABIE41_RS00770 0.11 +0.6 145,783 + ABIE41_RS00770 0.11 -1.4 145,783 + ABIE41_RS00770 0.11 +0.2 145,783 + ABIE41_RS00770 0.11 +0.1 145,783 + ABIE41_RS00770 0.11 +2.0 145,784 - ABIE41_RS00770 0.11 +0.1 145,784 - ABIE41_RS00770 0.11 -0.8 145,784 - ABIE41_RS00770 0.11 -0.2 145,784 - ABIE41_RS00770 0.11 -0.3 145,784 - ABIE41_RS00770 0.11 +0.1 145,784 - ABIE41_RS00770 0.11 +0.2 145,784 - ABIE41_RS00770 0.11 -0.2 145,784 - ABIE41_RS00770 0.11 -1.8 145,784 - ABIE41_RS00770 0.11 -0.1 145,785 - ABIE41_RS00770 0.11 +0.8 145,793 + ABIE41_RS00770 0.11 -0.1 145,812 + ABIE41_RS00770 0.12 +1.3 145,812 + ABIE41_RS00770 0.12 +0.7 145,812 + ABIE41_RS00770 0.12 +0.6 145,812 + ABIE41_RS00770 0.12 -0.1 145,834 + ABIE41_RS00770 0.13 -1.1 145,834 + ABIE41_RS00770 0.13 +1.2 145,834 + ABIE41_RS00770 0.13 -0.3 145,835 - ABIE41_RS00770 0.13 +0.5 145,835 - ABIE41_RS00770 0.13 -0.1 145,840 + ABIE41_RS00770 0.14 +1.4 145,840 + ABIE41_RS00770 0.14 +1.0 145,840 + ABIE41_RS00770 0.14 -0.9 145,840 + ABIE41_RS00770 0.14 +0.4 145,840 + ABIE41_RS00770 0.14 +1.1 145,841 - ABIE41_RS00770 0.14 +0.6
Or see this region's nucleotide sequence