Strain Fitness in Bosea sp. OAE506 around ABIE41_RS00490

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS00475 and ABIE41_RS00480 are separated by 8 nucleotidesABIE41_RS00480 and ABIE41_RS00485 overlap by 61 nucleotidesABIE41_RS00485 and ABIE41_RS00490 are separated by 28 nucleotidesABIE41_RS00490 and ABIE41_RS00495 are separated by 151 nucleotidesABIE41_RS00495 and ABIE41_RS00500 are separated by 60 nucleotides ABIE41_RS00475: ABIE41_RS00475 - SAVED domain-containing protein, at 84,563 to 85,243 _RS00475 ABIE41_RS00480: ABIE41_RS00480 - ATP-binding protein, at 85,252 to 85,830 _RS00480 ABIE41_RS00485: ABIE41_RS00485 - response regulator, at 85,770 to 86,198 _RS00485 ABIE41_RS00490: ABIE41_RS00490 - PAS domain-containing protein, at 86,227 to 87,321 _RS00490 ABIE41_RS00495: ABIE41_RS00495 - transposase, at 87,473 to 87,685 _RS00495 ABIE41_RS00500: ABIE41_RS00500 - response regulator, at 87,746 to 89,423 _RS00500 Position (kb) 86 87 88Strain fitness (log2 ratio) -2 -1 0 1 2 3at 85.271 kb on - strandat 85.377 kb on - strand, within ABIE41_RS00480at 85.398 kb on + strand, within ABIE41_RS00480at 85.399 kb on - strand, within ABIE41_RS00480at 85.399 kb on - strand, within ABIE41_RS00480at 85.431 kb on + strand, within ABIE41_RS00480at 85.432 kb on - strand, within ABIE41_RS00480at 85.432 kb on - strand, within ABIE41_RS00480at 85.479 kb on + strand, within ABIE41_RS00480at 85.479 kb on + strand, within ABIE41_RS00480at 85.479 kb on + strand, within ABIE41_RS00480at 85.479 kb on + strand, within ABIE41_RS00480at 85.479 kb on + strand, within ABIE41_RS00480at 85.479 kb on + strand, within ABIE41_RS00480at 85.479 kb on + strand, within ABIE41_RS00480at 85.480 kb on - strand, within ABIE41_RS00480at 85.480 kb on - strand, within ABIE41_RS00480at 85.480 kb on - strand, within ABIE41_RS00480at 85.480 kb on - strand, within ABIE41_RS00480at 85.480 kb on - strand, within ABIE41_RS00480at 85.480 kb on - strand, within ABIE41_RS00480at 85.586 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.589 kb on - strand, within ABIE41_RS00480at 85.589 kb on - strand, within ABIE41_RS00480at 85.589 kb on - strand, within ABIE41_RS00480at 85.593 kb on + strand, within ABIE41_RS00480at 85.593 kb on + strand, within ABIE41_RS00480at 85.593 kb on + strand, within ABIE41_RS00480at 85.594 kb on - strand, within ABIE41_RS00480at 85.594 kb on - strand, within ABIE41_RS00480at 85.594 kb on - strand, within ABIE41_RS00480at 85.594 kb on - strand, within ABIE41_RS00480at 85.594 kb on - strand, within ABIE41_RS00480at 85.661 kb on + strand, within ABIE41_RS00480at 85.661 kb on + strand, within ABIE41_RS00480at 85.661 kb on + strand, within ABIE41_RS00480at 85.661 kb on + strand, within ABIE41_RS00480at 85.661 kb on + strand, within ABIE41_RS00480at 85.661 kb on + strand, within ABIE41_RS00480at 85.662 kb on - strand, within ABIE41_RS00480at 85.662 kb on - strand, within ABIE41_RS00480at 85.867 kb on + strand, within ABIE41_RS00485at 85.867 kb on + strand, within ABIE41_RS00485at 85.867 kb on + strand, within ABIE41_RS00485at 85.868 kb on - strand, within ABIE41_RS00485at 85.868 kb on - strand, within ABIE41_RS00485at 85.868 kb on - strand, within ABIE41_RS00485at 85.868 kb on - strand, within ABIE41_RS00485at 85.969 kb on + strand, within ABIE41_RS00485at 85.969 kb on + strand, within ABIE41_RS00485at 85.969 kb on + strand, within ABIE41_RS00485at 85.970 kb on - strand, within ABIE41_RS00485at 85.970 kb on - strand, within ABIE41_RS00485at 86.228 kb on + strandat 86.228 kb on + strandat 86.228 kb on + strandat 86.228 kb on + strandat 86.228 kb on + strandat 86.228 kb on + strandat 86.228 kb on + strandat 86.228 kb on + strandat 86.229 kb on - strandat 86.229 kb on - strandat 86.229 kb on - strandat 86.229 kb on - strandat 86.229 kb on - strandat 86.292 kb on + strandat 86.293 kb on - strandat 86.391 kb on + strand, within ABIE41_RS00490at 86.391 kb on + strand, within ABIE41_RS00490at 86.391 kb on + strand, within ABIE41_RS00490at 86.392 kb on - strand, within ABIE41_RS00490at 86.392 kb on - strand, within ABIE41_RS00490at 86.393 kb on + strand, within ABIE41_RS00490at 86.393 kb on + strand, within ABIE41_RS00490at 86.393 kb on + strand, within ABIE41_RS00490at 86.393 kb on + strand, within ABIE41_RS00490at 86.393 kb on + strand, within ABIE41_RS00490at 86.393 kb on + strand, within ABIE41_RS00490at 86.393 kb on + strand, within ABIE41_RS00490at 86.394 kb on - strand, within ABIE41_RS00490at 86.394 kb on - strand, within ABIE41_RS00490at 86.394 kb on - strand, within ABIE41_RS00490at 86.394 kb on - strand, within ABIE41_RS00490at 86.394 kb on - strand, within ABIE41_RS00490at 86.394 kb on - strand, within ABIE41_RS00490at 86.394 kb on - strand, within ABIE41_RS00490at 86.981 kb on + strand, within ABIE41_RS00490at 86.981 kb on + strand, within ABIE41_RS00490at 86.981 kb on + strand, within ABIE41_RS00490at 87.017 kb on + strand, within ABIE41_RS00490at 87.017 kb on + strand, within ABIE41_RS00490at 87.018 kb on - strand, within ABIE41_RS00490at 87.316 kb on + strandat 87.428 kb on + strandat 87.428 kb on + strandat 87.428 kb on + strandat 87.430 kb on - strandat 87.445 kb on - strandat 87.500 kb on + strand, within ABIE41_RS00495at 87.501 kb on - strand, within ABIE41_RS00495at 87.501 kb on - strand, within ABIE41_RS00495at 87.539 kb on + strand, within ABIE41_RS00495at 87.539 kb on + strand, within ABIE41_RS00495at 87.539 kb on + strand, within ABIE41_RS00495at 87.539 kb on + strand, within ABIE41_RS00495at 87.539 kb on + strand, within ABIE41_RS00495at 87.540 kb on - strand, within ABIE41_RS00495at 87.540 kb on - strand, within ABIE41_RS00495at 87.540 kb on - strand, within ABIE41_RS00495at 87.540 kb on - strand, within ABIE41_RS00495at 87.540 kb on - strand, within ABIE41_RS00495at 87.540 kb on - strand, within ABIE41_RS00495at 87.588 kb on + strand, within ABIE41_RS00495at 87.589 kb on - strand, within ABIE41_RS00495at 87.589 kb on - strand, within ABIE41_RS00495at 87.589 kb on - strand, within ABIE41_RS00495at 87.602 kb on + strand, within ABIE41_RS00495at 87.602 kb on + strand, within ABIE41_RS00495at 87.602 kb on + strand, within ABIE41_RS00495at 87.714 kb on + strandat 87.715 kb on - strandat 87.727 kb on + strandat 87.727 kb on + strandat 87.727 kb on + strandat 87.728 kb on - strandat 87.728 kb on - strandat 87.728 kb on - strandat 87.728 kb on - strandat 87.821 kb on + strandat 87.821 kb on + strandat 87.821 kb on + strandat 87.821 kb on + strandat 87.822 kb on - strandat 87.822 kb on - strandat 87.822 kb on - strandat 87.858 kb on + strandat 87.859 kb on - strandat 88.021 kb on + strand, within ABIE41_RS00500at 88.021 kb on + strand, within ABIE41_RS00500at 88.022 kb on - strand, within ABIE41_RS00500at 88.022 kb on - strand, within ABIE41_RS00500at 88.094 kb on + strand, within ABIE41_RS00500at 88.095 kb on - strand, within ABIE41_RS00500at 88.095 kb on - strand, within ABIE41_RS00500at 88.095 kb on - strand, within ABIE41_RS00500

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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85,271 - +0.1
85,377 - ABIE41_RS00480 0.22 +0.5
85,398 + ABIE41_RS00480 0.25 +0.4
85,399 - ABIE41_RS00480 0.25 +0.3
85,399 - ABIE41_RS00480 0.25 -0.2
85,431 + ABIE41_RS00480 0.31 -1.9
85,432 - ABIE41_RS00480 0.31 +0.2
85,432 - ABIE41_RS00480 0.31 +2.2
85,479 + ABIE41_RS00480 0.39 -0.4
85,479 + ABIE41_RS00480 0.39 -1.7
85,479 + ABIE41_RS00480 0.39 -0.6
85,479 + ABIE41_RS00480 0.39 -0.7
85,479 + ABIE41_RS00480 0.39 +2.2
85,479 + ABIE41_RS00480 0.39 +2.0
85,479 + ABIE41_RS00480 0.39 +1.2
85,480 - ABIE41_RS00480 0.39 -1.3
85,480 - ABIE41_RS00480 0.39 -0.0
85,480 - ABIE41_RS00480 0.39 +0.1
85,480 - ABIE41_RS00480 0.39 +2.5
85,480 - ABIE41_RS00480 0.39 -0.3
85,480 - ABIE41_RS00480 0.39 -1.7
85,586 + ABIE41_RS00480 0.58 -0.6
85,588 + ABIE41_RS00480 0.58 -1.6
85,588 + ABIE41_RS00480 0.58 +1.0
85,588 + ABIE41_RS00480 0.58 +0.7
85,588 + ABIE41_RS00480 0.58 +0.2
85,588 + ABIE41_RS00480 0.58 +0.4
85,588 + ABIE41_RS00480 0.58 +0.1
85,588 + ABIE41_RS00480 0.58 -0.0
85,588 + ABIE41_RS00480 0.58 +1.6
85,588 + ABIE41_RS00480 0.58 -0.4
85,588 + ABIE41_RS00480 0.58 +0.8
85,588 + ABIE41_RS00480 0.58 -2.1
85,589 - ABIE41_RS00480 0.58 +0.4
85,589 - ABIE41_RS00480 0.58 +0.3
85,589 - ABIE41_RS00480 0.58 +1.1
85,593 + ABIE41_RS00480 0.59 +0.2
85,593 + ABIE41_RS00480 0.59 -0.4
85,593 + ABIE41_RS00480 0.59 -1.1
85,594 - ABIE41_RS00480 0.59 -0.0
85,594 - ABIE41_RS00480 0.59 +0.1
85,594 - ABIE41_RS00480 0.59 -0.8
85,594 - ABIE41_RS00480 0.59 -0.2
85,594 - ABIE41_RS00480 0.59 +0.1
85,661 + ABIE41_RS00480 0.71 -1.2
85,661 + ABIE41_RS00480 0.71 +0.7
85,661 + ABIE41_RS00480 0.71 -0.8
85,661 + ABIE41_RS00480 0.71 +0.6
85,661 + ABIE41_RS00480 0.71 -0.7
85,661 + ABIE41_RS00480 0.71 -2.1
85,662 - ABIE41_RS00480 0.71 -0.4
85,662 - ABIE41_RS00480 0.71 -1.0
85,867 + ABIE41_RS00485 0.23 -0.1
85,867 + ABIE41_RS00485 0.23 +2.4
85,867 + ABIE41_RS00485 0.23 +2.5
85,868 - ABIE41_RS00485 0.23 +0.2
85,868 - ABIE41_RS00485 0.23 +0.7
85,868 - ABIE41_RS00485 0.23 +0.4
85,868 - ABIE41_RS00485 0.23 +0.3
85,969 + ABIE41_RS00485 0.46 +1.8
85,969 + ABIE41_RS00485 0.46 -0.2
85,969 + ABIE41_RS00485 0.46 +0.2
85,970 - ABIE41_RS00485 0.47 +0.6
85,970 - ABIE41_RS00485 0.47 -1.7
86,228 + -1.3
86,228 + +0.4
86,228 + +1.1
86,228 + -0.2
86,228 + -0.7
86,228 + +0.4
86,228 + +0.6
86,228 + -0.1
86,229 - -1.6
86,229 - -0.3
86,229 - +0.1
86,229 - -0.8
86,229 - -0.2
86,292 + -0.7
86,293 - -0.4
86,391 + ABIE41_RS00490 0.15 -0.5
86,391 + ABIE41_RS00490 0.15 +1.4
86,391 + ABIE41_RS00490 0.15 -0.1
86,392 - ABIE41_RS00490 0.15 +0.1
86,392 - ABIE41_RS00490 0.15 +0.5
86,393 + ABIE41_RS00490 0.15 -0.2
86,393 + ABIE41_RS00490 0.15 +0.1
86,393 + ABIE41_RS00490 0.15 +0.6
86,393 + ABIE41_RS00490 0.15 -0.4
86,393 + ABIE41_RS00490 0.15 -0.8
86,393 + ABIE41_RS00490 0.15 +0.8
86,393 + ABIE41_RS00490 0.15 +0.0
86,394 - ABIE41_RS00490 0.15 -0.2
86,394 - ABIE41_RS00490 0.15 +1.7
86,394 - ABIE41_RS00490 0.15 -0.8
86,394 - ABIE41_RS00490 0.15 +1.0
86,394 - ABIE41_RS00490 0.15 -0.5
86,394 - ABIE41_RS00490 0.15 -1.6
86,394 - ABIE41_RS00490 0.15 +0.6
86,981 + ABIE41_RS00490 0.69 +0.2
86,981 + ABIE41_RS00490 0.69 +0.2
86,981 + ABIE41_RS00490 0.69 -0.9
87,017 + ABIE41_RS00490 0.72 -0.1
87,017 + ABIE41_RS00490 0.72 +1.2
87,018 - ABIE41_RS00490 0.72 -0.5
87,316 + +1.6
87,428 + +1.0
87,428 + -2.2
87,428 + +1.0
87,430 - -0.0
87,445 - +0.1
87,500 + ABIE41_RS00495 0.13 +0.9
87,501 - ABIE41_RS00495 0.13 -0.6
87,501 - ABIE41_RS00495 0.13 +0.3
87,539 + ABIE41_RS00495 0.31 +0.4
87,539 + ABIE41_RS00495 0.31 +0.1
87,539 + ABIE41_RS00495 0.31 +1.0
87,539 + ABIE41_RS00495 0.31 +0.2
87,539 + ABIE41_RS00495 0.31 -0.2
87,540 - ABIE41_RS00495 0.31 -0.6
87,540 - ABIE41_RS00495 0.31 +0.0
87,540 - ABIE41_RS00495 0.31 +0.6
87,540 - ABIE41_RS00495 0.31 -0.3
87,540 - ABIE41_RS00495 0.31 +0.3
87,540 - ABIE41_RS00495 0.31 +0.1
87,588 + ABIE41_RS00495 0.54 +0.7
87,589 - ABIE41_RS00495 0.54 +0.6
87,589 - ABIE41_RS00495 0.54 -0.8
87,589 - ABIE41_RS00495 0.54 +0.6
87,602 + ABIE41_RS00495 0.61 +0.4
87,602 + ABIE41_RS00495 0.61 +3.7
87,602 + ABIE41_RS00495 0.61 +0.4
87,714 + -0.2
87,715 - +0.9
87,727 + -1.3
87,727 + +0.4
87,727 + +0.0
87,728 - +0.1
87,728 - -0.9
87,728 - +0.4
87,728 - +2.5
87,821 + +0.1
87,821 + +1.3
87,821 + -0.4
87,821 + +0.2
87,822 - -0.6
87,822 - +2.0
87,822 - +0.5
87,858 + +0.8
87,859 - -0.4
88,021 + ABIE41_RS00500 0.16 -0.6
88,021 + ABIE41_RS00500 0.16 +0.3
88,022 - ABIE41_RS00500 0.16 -1.0
88,022 - ABIE41_RS00500 0.16 +2.2
88,094 + ABIE41_RS00500 0.21 +0.0
88,095 - ABIE41_RS00500 0.21 +0.0
88,095 - ABIE41_RS00500 0.21 -0.4
88,095 - ABIE41_RS00500 0.21 +0.2

Or see this region's nucleotide sequence