Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS00320 and ABIE41_RS00325 are separated by 213 nucleotides ABIE41_RS00325 and ABIE41_RS00330 are separated by 34 nucleotides ABIE41_RS00330 and ABIE41_RS00335 are separated by 22 nucleotides ABIE41_RS00335 and ABIE41_RS00340 are separated by 253 nucleotides
ABIE41_RS00320: ABIE41_RS00320 - methyl-accepting chemotaxis protein, at 55,640 to 57,460
_RS00320
ABIE41_RS00325: ABIE41_RS00325 - LemA family protein, at 57,674 to 58,231
_RS00325
ABIE41_RS00330: ABIE41_RS00330 - M48 family metallopeptidase, at 58,266 to 59,363
_RS00330
ABIE41_RS00335: ABIE41_RS00335 - 2-hydroxychromene-2-carboxylate isomerase, at 59,386 to 59,994
_RS00335
ABIE41_RS00340: ABIE41_RS00340 - argininosuccinate synthase, at 60,248 to 61,480
_RS00340
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 57.321 kb on + strand at 57.322 kb on - strand at 57.468 kb on - strand at 57.478 kb on + strand at 57.478 kb on + strand at 57.479 kb on - strand at 57.537 kb on + strand at 57.538 kb on - strand at 57.539 kb on + strand at 57.540 kb on - strand at 57.565 kb on + strand at 57.716 kb on + strand at 57.717 kb on - strand at 57.717 kb on - strand at 57.717 kb on - strand at 57.717 kb on - strand at 57.731 kb on + strand, within ABIE41_RS00325 at 57.731 kb on + strand, within ABIE41_RS00325 at 57.731 kb on + strand, within ABIE41_RS00325 at 57.731 kb on + strand, within ABIE41_RS00325 at 57.731 kb on + strand, within ABIE41_RS00325 at 57.731 kb on + strand, within ABIE41_RS00325 at 57.731 kb on + strand, within ABIE41_RS00325 at 57.731 kb on + strand, within ABIE41_RS00325 at 57.731 kb on + strand, within ABIE41_RS00325 at 57.732 kb on - strand, within ABIE41_RS00325 at 57.732 kb on - strand, within ABIE41_RS00325 at 57.732 kb on - strand, within ABIE41_RS00325 at 57.732 kb on - strand, within ABIE41_RS00325 at 57.733 kb on + strand, within ABIE41_RS00325 at 57.734 kb on - strand, within ABIE41_RS00325 at 57.846 kb on - strand, within ABIE41_RS00325 at 57.879 kb on + strand, within ABIE41_RS00325 at 58.290 kb on + strand at 58.290 kb on + strand at 58.291 kb on - strand at 58.291 kb on - strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.425 kb on + strand, within ABIE41_RS00330 at 58.426 kb on - strand, within ABIE41_RS00330 at 58.772 kb on + strand, within ABIE41_RS00330 at 59.001 kb on + strand, within ABIE41_RS00330 at 59.001 kb on + strand, within ABIE41_RS00330 at 59.001 kb on + strand, within ABIE41_RS00330 at 59.002 kb on - strand, within ABIE41_RS00330 at 59.002 kb on - strand, within ABIE41_RS00330 at 59.002 kb on - strand, within ABIE41_RS00330 at 59.002 kb on - strand, within ABIE41_RS00330 at 59.002 kb on - strand, within ABIE41_RS00330 at 59.229 kb on - strand, within ABIE41_RS00330 at 59.502 kb on - strand, within ABIE41_RS00335 at 59.556 kb on - strand, within ABIE41_RS00335 at 59.796 kb on + strand, within ABIE41_RS00335 at 59.796 kb on + strand, within ABIE41_RS00335 at 59.796 kb on + strand, within ABIE41_RS00335 at 59.796 kb on + strand, within ABIE41_RS00335 at 59.796 kb on + strand, within ABIE41_RS00335 at 59.796 kb on + strand, within ABIE41_RS00335 at 59.796 kb on + strand, within ABIE41_RS00335 at 59.796 kb on + strand, within ABIE41_RS00335 at 59.796 kb on + strand, within ABIE41_RS00335 at 59.796 kb on + strand, within ABIE41_RS00335 at 59.797 kb on - strand, within ABIE41_RS00335 at 59.797 kb on - strand, within ABIE41_RS00335 at 59.797 kb on - strand, within ABIE41_RS00335 at 59.797 kb on - strand, within ABIE41_RS00335 at 59.797 kb on - strand, within ABIE41_RS00335 at 59.797 kb on - strand, within ABIE41_RS00335 at 59.797 kb on - strand, within ABIE41_RS00335 at 59.797 kb on - strand, within ABIE41_RS00335 at 59.797 kb on - strand, within ABIE41_RS00335 at 59.797 kb on - strand, within ABIE41_RS00335 at 59.797 kb on - strand, within ABIE41_RS00335 at 59.797 kb on - strand, within ABIE41_RS00335 at 59.797 kb on - strand, within ABIE41_RS00335 at 59.797 kb on - strand, within ABIE41_RS00335 at 59.798 kb on + strand, within ABIE41_RS00335 at 59.799 kb on - strand, within ABIE41_RS00335 at 59.799 kb on - strand, within ABIE41_RS00335 at 59.945 kb on + strand at 59.945 kb on + strand at 59.945 kb on + strand at 59.945 kb on + strand at 59.946 kb on - strand at 59.946 kb on - strand at 59.955 kb on + strand at 59.963 kb on + strand at 59.963 kb on + strand at 59.963 kb on + strand at 59.963 kb on + strand at 59.963 kb on + strand at 59.964 kb on - strand at 59.964 kb on - strand at 59.964 kb on - strand at 59.964 kb on - strand at 59.964 kb on - strand at 59.964 kb on - strand at 59.964 kb on - strand at 59.964 kb on - strand at 59.964 kb on - strand at 60.179 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 57,321 + -0.8 57,322 - -0.1 57,468 - +1.2 57,478 + +0.2 57,478 + -0.3 57,479 - +0.4 57,537 + +0.1 57,538 - -0.8 57,539 + -0.5 57,540 - -0.8 57,565 + -0.6 57,716 + -0.3 57,717 - +0.1 57,717 - -0.0 57,717 - -0.8 57,717 - -0.3 57,731 + ABIE41_RS00325 0.10 -1.7 57,731 + ABIE41_RS00325 0.10 +0.8 57,731 + ABIE41_RS00325 0.10 -1.7 57,731 + ABIE41_RS00325 0.10 -1.7 57,731 + ABIE41_RS00325 0.10 +0.1 57,731 + ABIE41_RS00325 0.10 -0.3 57,731 + ABIE41_RS00325 0.10 -0.2 57,731 + ABIE41_RS00325 0.10 -0.6 57,731 + ABIE41_RS00325 0.10 -0.0 57,732 - ABIE41_RS00325 0.10 +0.8 57,732 - ABIE41_RS00325 0.10 -0.4 57,732 - ABIE41_RS00325 0.10 -0.2 57,732 - ABIE41_RS00325 0.10 +1.0 57,733 + ABIE41_RS00325 0.11 -0.2 57,734 - ABIE41_RS00325 0.11 -1.5 57,846 - ABIE41_RS00325 0.31 -0.4 57,879 + ABIE41_RS00325 0.37 -0.4 58,290 + -0.4 58,290 + -0.1 58,291 - -0.9 58,291 - -1.8 58,356 + +0.2 58,356 + -0.7 58,356 + -0.5 58,356 + -0.2 58,356 + -2.8 58,356 + +1.0 58,356 + -0.6 58,356 + -0.2 58,357 - -0.7 58,357 - -0.3 58,357 - +0.1 58,357 - +0.7 58,357 - +0.3 58,357 - +0.2 58,357 - +0.4 58,357 - -0.7 58,425 + ABIE41_RS00330 0.14 +1.6 58,426 - ABIE41_RS00330 0.15 +0.7 58,772 + ABIE41_RS00330 0.46 -0.6 59,001 + ABIE41_RS00330 0.67 +0.4 59,001 + ABIE41_RS00330 0.67 -0.2 59,001 + ABIE41_RS00330 0.67 +0.3 59,002 - ABIE41_RS00330 0.67 -1.5 59,002 - ABIE41_RS00330 0.67 -0.2 59,002 - ABIE41_RS00330 0.67 +0.1 59,002 - ABIE41_RS00330 0.67 +1.5 59,002 - ABIE41_RS00330 0.67 +1.6 59,229 - ABIE41_RS00330 0.88 +0.7 59,502 - ABIE41_RS00335 0.19 +1.7 59,556 - ABIE41_RS00335 0.28 +0.4 59,796 + ABIE41_RS00335 0.67 +0.4 59,796 + ABIE41_RS00335 0.67 -0.1 59,796 + ABIE41_RS00335 0.67 +0.2 59,796 + ABIE41_RS00335 0.67 +1.6 59,796 + ABIE41_RS00335 0.67 +0.2 59,796 + ABIE41_RS00335 0.67 -0.2 59,796 + ABIE41_RS00335 0.67 +2.0 59,796 + ABIE41_RS00335 0.67 +1.0 59,796 + ABIE41_RS00335 0.67 +1.2 59,796 + ABIE41_RS00335 0.67 +0.9 59,797 - ABIE41_RS00335 0.67 +2.0 59,797 - ABIE41_RS00335 0.67 -0.0 59,797 - ABIE41_RS00335 0.67 +0.8 59,797 - ABIE41_RS00335 0.67 -0.1 59,797 - ABIE41_RS00335 0.67 -2.8 59,797 - ABIE41_RS00335 0.67 +0.0 59,797 - ABIE41_RS00335 0.67 -0.2 59,797 - ABIE41_RS00335 0.67 +0.5 59,797 - ABIE41_RS00335 0.67 -1.1 59,797 - ABIE41_RS00335 0.67 +0.4 59,797 - ABIE41_RS00335 0.67 -0.0 59,797 - ABIE41_RS00335 0.67 +2.2 59,797 - ABIE41_RS00335 0.67 -0.4 59,797 - ABIE41_RS00335 0.67 +0.5 59,798 + ABIE41_RS00335 0.68 -0.9 59,799 - ABIE41_RS00335 0.68 -1.2 59,799 - ABIE41_RS00335 0.68 +1.0 59,945 + -0.8 59,945 + +0.8 59,945 + +0.2 59,945 + +1.2 59,946 - +0.7 59,946 - +3.6 59,955 + +0.2 59,963 + -0.6 59,963 + +0.0 59,963 + +0.0 59,963 + -1.0 59,963 + -0.3 59,964 - -3.3 59,964 - -0.1 59,964 - -1.0 59,964 - +0.0 59,964 - +0.9 59,964 - +2.0 59,964 - +0.1 59,964 - +0.6 59,964 - +0.3 60,179 + -0.5
Or see this region's nucleotide sequence