Strain Fitness in Pseudomonas sp. RS175 around PFR28_04841

Experiment: Betaine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)
5,531,048	+		PFR28_04839	0.43	+0.1
5,531,049	-		PFR28_04839	0.44	-3.6
5,531,151	-		PFR28_04839	0.69	-0.2
5,531,151	-		PFR28_04839	0.69	+0.0
5,531,209	+		PFR28_04839	0.84	+0.3
5,531,210	-		PFR28_04839	0.84	-1.2
5,531,210	-		PFR28_04839	0.84	-0.3
5,531,210	-		PFR28_04839	0.84	-0.7
5,531,223	-		PFR28_04839	0.88	+1.1
5,531,248	+				-1.5
5,531,248	+				-0.6
5,531,248	+				-2.1
5,531,248	+				-0.2
5,531,248	+				-0.6
5,531,249	-				+0.8
5,531,249	-				-0.3
5,531,249	-				+1.3
5,531,745	+		PFR28_04840	0.59	-2.8
5,531,746	-		PFR28_04840	0.59	-0.9
5,531,746	-		PFR28_04840	0.59	-2.4
5,531,809	+		PFR28_04840	0.69	+0.9
5,531,938	+		PFR28_04840	0.88	-2.8
5,531,938	+		PFR28_04840	0.88	-0.5
5,531,939	-		PFR28_04840	0.88	-2.6
5,531,939	-		PFR28_04840	0.88	+0.5
5,531,939	-		PFR28_04840	0.88	+1.5
5,531,942	+		PFR28_04840	0.89	-1.2
5,531,942	+		PFR28_04840	0.89	+2.1
5,531,942	+		PFR28_04840	0.89	+0.8
5,531,942	+		PFR28_04840	0.89	+3.1
5,531,942	+		PFR28_04840	0.89	-1.1
5,531,942	+		PFR28_04840	0.89	-0.5
5,531,943	-		PFR28_04840	0.89	-0.5
5,531,998	+				-0.6
5,531,998	+				+1.9
5,531,998	+				-0.4
5,531,998	+				+0.5
5,531,998	+				+2.1
5,531,999	-				-1.1
5,531,999	-				+1.7
5,531,999	-				+1.3
5,531,999	-				-0.1
5,531,999	-				+1.0
5,531,999	-				-0.3
5,531,999	-				+1.9
5,531,999	-				+0.5
5,532,010	+				-0.9
5,532,010	+				-2.2
5,532,010	+				+0.3
5,532,010	+				+0.1
5,532,011	-				+0.5
5,532,011	-				+1.3
5,532,011	-				+1.3
5,532,011	-				+0.7
5,532,110	+				+0.5
5,532,110	+				+1.3
5,532,110	+				+1.5
5,532,110	+				-0.8
5,532,111	-				-1.0
5,532,111	-				-2.4
5,532,111	-				-0.1
5,532,111	-				-0.5
5,532,111	-				+2.1
5,532,111	-				+2.2
5,532,137	+				-0.1
5,532,137	+				-2.9
5,532,137	+				+0.1
5,532,137	+				+2.9
5,532,138	-				-0.1
5,532,147	-				+0.8
5,532,147	-				-1.8
5,532,167	-				-0.5
5,532,167	-				+1.8
5,532,197	+		PFR28_04841	0.11	-1.1
5,532,197	+		PFR28_04841	0.11	-0.1
5,532,197	+		PFR28_04841	0.11	+1.7
5,532,197	+		PFR28_04841	0.11	+1.2
5,532,198	-		PFR28_04841	0.11	-1.2
5,532,367	+		PFR28_04841	0.23	+1.3
5,532,411	+		PFR28_04841	0.26	+0.2
5,532,411	+		PFR28_04841	0.26	+1.6
5,532,412	-		PFR28_04841	0.26	-0.1
5,532,422	+		PFR28_04841	0.27	+1.1
5,532,422	+		PFR28_04841	0.27	-0.4
5,532,422	+		PFR28_04841	0.27	-0.9
5,532,423	-		PFR28_04841	0.27	-0.7
5,532,423	-		PFR28_04841	0.27	+1.1
5,532,423	-		PFR28_04841	0.27	-2.3
5,532,423	-		PFR28_04841	0.27	+0.9
5,532,423	-		PFR28_04841	0.27	-0.2
5,532,423	-		PFR28_04841	0.27	+0.7
5,532,455	+		PFR28_04841	0.29	-1.4
5,532,455	+		PFR28_04841	0.29	+0.9
5,532,455	+		PFR28_04841	0.29	-0.3
5,532,456	-		PFR28_04841	0.29	-0.5
5,532,456	-		PFR28_04841	0.29	-0.3
5,532,456	-		PFR28_04841	0.29	-0.7
5,532,605	+		PFR28_04841	0.40	+1.6
5,532,605	+		PFR28_04841	0.40	+0.3
5,532,605	+		PFR28_04841	0.40	-0.7
5,532,605	+		PFR28_04841	0.40	+0.3
5,532,606	-		PFR28_04841	0.40	-0.9
5,532,606	-		PFR28_04841	0.40	-0.5
5,532,637	+		PFR28_04841	0.42	+0.6
5,533,049	+		PFR28_04841	0.71	-1.5
5,533,053	-		PFR28_04841	0.71	-1.2
5,533,157	+		PFR28_04841	0.79	+0.7
5,533,157	+		PFR28_04841	0.79	-1.1
5,533,157	+		PFR28_04841	0.79	+0.3
5,533,157	+		PFR28_04841	0.79	+1.7
5,533,157	+		PFR28_04841	0.79	-0.1
5,533,157	+		PFR28_04841	0.79	+0.9
5,533,158	-		PFR28_04841	0.79	+2.9
5,533,158	-		PFR28_04841	0.79	-0.5
5,533,158	-		PFR28_04841	0.79	-0.7
5,533,158	-		PFR28_04841	0.79	+1.0
5,533,158	-		PFR28_04841	0.79	-0.2
5,533,158	-		PFR28_04841	0.79	+1.5
5,533,349	+				-0.6
5,533,349	+				+1.5
5,533,349	+				+0.5
5,533,350	-				-1.2
5,533,414	+				-1.2
5,533,414	+				+2.7
5,533,414	+				-1.0
5,533,414	+				-0.5
5,533,415	-				-1.6
5,533,415	-				-1.9
5,533,511	+				+0.3
5,533,511	+				+2.4
5,533,511	+				-0.7
5,533,511	+				-0.3
5,533,511	+				-0.5
5,533,511	+				+0.7
5,533,511	+				+0.1
5,533,511	+				+3.1
5,533,511	+				-0.3
5,533,511	+				-1.2
5,533,511	+				-1.5
5,533,511	+				-1.2
5,533,511	+				-0.2
5,533,512	-				-1.6
5,533,512	-				+0.5
5,533,512	-				+0.5
5,533,512	-				+0.1
5,533,512	-				-0.3
5,533,512	-				+1.4
5,533,512	-				-1.3
5,533,512	-				+5.6
5,533,512	-				+1.3
5,533,512	-				+0.7
5,533,512	-				+1.1
5,533,512	-				+0.3
5,533,512	-				-1.0
5,533,512	-				-0.3
5,533,512	-				-3.5
5,533,512	-				-1.4
5,533,516	+				+0.3
5,533,516	+				-0.6
5,533,516	+				+3.7
5,533,516	+				-0.6
5,533,516	+				+2.0
5,533,516	+				-1.6
5,533,517	-				-1.4
5,533,522	-				+0.1
5,533,537	+				-0.0
5,533,538	-				-1.8
5,533,553	+				-0.4
5,533,554	-				-1.3
5,533,554	-				-0.9
5,533,554	-				+0.5
5,533,554	-				-0.5
5,533,659	+				+0.0
5,533,659	+				-1.3
5,533,732	+				+0.8
5,533,733	-				+1.5
5,533,747	+				-0.5
5,533,747	+				-0.7
5,533,747	+				-1.1
5,533,747	+				+0.7
5,533,747	+				-2.3
5,533,747	+				+0.3
5,533,748	-				+0.3
5,533,748	-				+0.5
5,533,748	-				-2.6
5,533,748	-				-0.7
5,533,824	+		PFR28_04842	0.15	-1.0
5,533,954	+		PFR28_04842	0.26	-2.0
5,533,954	+		PFR28_04842	0.26	-1.1
5,533,955	-		PFR28_04842	0.26	-1.3
5,533,955	-		PFR28_04842	0.26	+1.8
5,534,176	+		PFR28_04842	0.44	+1.0
5,534,176	+		PFR28_04842	0.44	-1.7
5,534,176	+		PFR28_04842	0.44	+1.2
5,534,176	+		PFR28_04842	0.44	+0.8
5,534,176	+		PFR28_04842	0.44	-0.7
5,534,176	+		PFR28_04842	0.44	-0.6
5,534,177	-		PFR28_04842	0.44	-0.8
5,534,177	-		PFR28_04842	0.44	+0.1
5,534,177	-		PFR28_04842	0.44	-0.9
5,534,244	+		PFR28_04842	0.49	-0.5
5,534,244	+		PFR28_04842	0.49	+2.1
5,534,244	+		PFR28_04842	0.49	+0.5
5,534,245	-		PFR28_04842	0.49	-2.0
5,534,245	-		PFR28_04842	0.49	+0.8
5,534,245	-		PFR28_04842	0.49	-1.5