Experiment: Betaine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_02338 and PFR28_02339 are separated by 22 nucleotides PFR28_02339 and PFR28_02340 are separated by 22 nucleotides
PFR28_02338: PFR28_02338 - hypothetical protein, at 2,792,522 to 2,793,457
_02338
PFR28_02339: PFR28_02339 - hypothetical protein, at 2,793,480 to 2,794,013
_02339
PFR28_02340: PFR28_02340 - Periplasmic trehalase, at 2,794,036 to 2,795,661
_02340
Position (kb)
2793
2794
2795 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2792.493 kb on - strand at 2792.498 kb on - strand at 2792.533 kb on + strand at 2792.534 kb on - strand at 2792.660 kb on + strand, within PFR28_02338 at 2793.023 kb on + strand, within PFR28_02338 at 2793.023 kb on + strand, within PFR28_02338 at 2793.023 kb on + strand, within PFR28_02338 at 2793.023 kb on + strand, within PFR28_02338 at 2793.024 kb on - strand, within PFR28_02338 at 2793.024 kb on - strand, within PFR28_02338 at 2793.024 kb on - strand, within PFR28_02338 at 2793.263 kb on + strand, within PFR28_02338 at 2793.263 kb on + strand, within PFR28_02338 at 2793.263 kb on + strand, within PFR28_02338 at 2793.264 kb on - strand, within PFR28_02338 at 2793.314 kb on + strand, within PFR28_02338 at 2793.315 kb on - strand, within PFR28_02338 at 2793.315 kb on - strand, within PFR28_02338 at 2793.497 kb on - strand at 2793.601 kb on + strand, within PFR28_02339 at 2793.601 kb on + strand, within PFR28_02339 at 2793.727 kb on + strand, within PFR28_02339 at 2793.728 kb on - strand, within PFR28_02339 at 2793.728 kb on - strand, within PFR28_02339 at 2793.728 kb on - strand, within PFR28_02339 at 2793.736 kb on + strand, within PFR28_02339 at 2793.737 kb on - strand, within PFR28_02339 at 2793.740 kb on + strand, within PFR28_02339 at 2793.741 kb on - strand, within PFR28_02339 at 2793.741 kb on - strand, within PFR28_02339 at 2793.741 kb on - strand, within PFR28_02339 at 2793.741 kb on - strand, within PFR28_02339 at 2793.845 kb on - strand, within PFR28_02339 at 2793.880 kb on + strand, within PFR28_02339 at 2793.881 kb on - strand, within PFR28_02339 at 2793.881 kb on - strand, within PFR28_02339 at 2793.881 kb on - strand, within PFR28_02339 at 2793.881 kb on - strand, within PFR28_02339 at 2793.997 kb on + strand at 2793.997 kb on + strand at 2794.068 kb on - strand at 2794.127 kb on + strand at 2794.127 kb on + strand at 2794.127 kb on + strand at 2794.128 kb on - strand at 2794.128 kb on - strand at 2794.128 kb on - strand at 2794.199 kb on + strand, within PFR28_02340 at 2794.433 kb on + strand, within PFR28_02340 at 2794.433 kb on + strand, within PFR28_02340 at 2794.493 kb on + strand, within PFR28_02340 at 2794.493 kb on + strand, within PFR28_02340 at 2794.493 kb on + strand, within PFR28_02340 at 2794.502 kb on + strand, within PFR28_02340 at 2794.502 kb on + strand, within PFR28_02340 at 2794.502 kb on + strand, within PFR28_02340 at 2794.502 kb on + strand, within PFR28_02340 at 2794.503 kb on - strand, within PFR28_02340 at 2794.503 kb on - strand, within PFR28_02340 at 2794.503 kb on - strand, within PFR28_02340 at 2794.503 kb on - strand, within PFR28_02340 at 2794.503 kb on - strand, within PFR28_02340 at 2794.503 kb on - strand, within PFR28_02340 at 2794.503 kb on - strand, within PFR28_02340 at 2794.505 kb on + strand, within PFR28_02340 at 2794.506 kb on - strand, within PFR28_02340 at 2794.572 kb on - strand, within PFR28_02340 at 2794.572 kb on - strand, within PFR28_02340 at 2794.572 kb on - strand, within PFR28_02340 at 2794.638 kb on - strand, within PFR28_02340 at 2794.638 kb on - strand, within PFR28_02340 at 2794.856 kb on + strand, within PFR28_02340 at 2794.943 kb on + strand, within PFR28_02340 at 2794.944 kb on - strand, within PFR28_02340 at 2794.950 kb on - strand, within PFR28_02340 at 2795.001 kb on + strand, within PFR28_02340
Per-strain Table
Position Strand Gene LocusTag Fraction Betaine (C) remove 2,792,493 - -0.4 2,792,498 - +1.5 2,792,533 + +0.3 2,792,534 - +1.7 2,792,660 + PFR28_02338 0.15 +1.3 2,793,023 + PFR28_02338 0.54 -1.5 2,793,023 + PFR28_02338 0.54 -2.4 2,793,023 + PFR28_02338 0.54 -1.7 2,793,023 + PFR28_02338 0.54 +0.3 2,793,024 - PFR28_02338 0.54 -0.2 2,793,024 - PFR28_02338 0.54 +1.2 2,793,024 - PFR28_02338 0.54 +0.9 2,793,263 + PFR28_02338 0.79 -0.6 2,793,263 + PFR28_02338 0.79 -0.6 2,793,263 + PFR28_02338 0.79 -2.7 2,793,264 - PFR28_02338 0.79 -1.7 2,793,314 + PFR28_02338 0.85 +0.4 2,793,315 - PFR28_02338 0.85 -1.0 2,793,315 - PFR28_02338 0.85 +2.3 2,793,497 - -0.3 2,793,601 + PFR28_02339 0.23 +1.9 2,793,601 + PFR28_02339 0.23 +1.7 2,793,727 + PFR28_02339 0.46 +2.7 2,793,728 - PFR28_02339 0.46 +0.1 2,793,728 - PFR28_02339 0.46 +2.5 2,793,728 - PFR28_02339 0.46 -1.4 2,793,736 + PFR28_02339 0.48 -0.4 2,793,737 - PFR28_02339 0.48 -0.3 2,793,740 + PFR28_02339 0.49 -0.5 2,793,741 - PFR28_02339 0.49 -1.6 2,793,741 - PFR28_02339 0.49 -2.3 2,793,741 - PFR28_02339 0.49 -1.6 2,793,741 - PFR28_02339 0.49 -0.6 2,793,845 - PFR28_02339 0.68 -2.0 2,793,880 + PFR28_02339 0.75 +0.3 2,793,881 - PFR28_02339 0.75 +1.4 2,793,881 - PFR28_02339 0.75 -0.7 2,793,881 - PFR28_02339 0.75 +3.1 2,793,881 - PFR28_02339 0.75 -2.3 2,793,997 + -2.0 2,793,997 + +1.9 2,794,068 - +0.5 2,794,127 + -0.8 2,794,127 + -1.1 2,794,127 + -0.7 2,794,128 - +0.0 2,794,128 - -1.4 2,794,128 - -0.2 2,794,199 + PFR28_02340 0.10 -1.7 2,794,433 + PFR28_02340 0.24 +1.4 2,794,433 + PFR28_02340 0.24 -1.4 2,794,493 + PFR28_02340 0.28 -0.4 2,794,493 + PFR28_02340 0.28 +0.5 2,794,493 + PFR28_02340 0.28 -1.4 2,794,502 + PFR28_02340 0.29 -1.0 2,794,502 + PFR28_02340 0.29 -0.5 2,794,502 + PFR28_02340 0.29 -1.0 2,794,502 + PFR28_02340 0.29 -2.0 2,794,503 - PFR28_02340 0.29 +0.1 2,794,503 - PFR28_02340 0.29 -1.7 2,794,503 - PFR28_02340 0.29 -2.0 2,794,503 - PFR28_02340 0.29 -1.2 2,794,503 - PFR28_02340 0.29 +0.5 2,794,503 - PFR28_02340 0.29 -0.4 2,794,503 - PFR28_02340 0.29 +0.7 2,794,505 + PFR28_02340 0.29 +1.6 2,794,506 - PFR28_02340 0.29 -0.0 2,794,572 - PFR28_02340 0.33 +2.1 2,794,572 - PFR28_02340 0.33 -0.2 2,794,572 - PFR28_02340 0.33 +0.6 2,794,638 - PFR28_02340 0.37 +1.1 2,794,638 - PFR28_02340 0.37 +0.2 2,794,856 + PFR28_02340 0.50 -0.3 2,794,943 + PFR28_02340 0.56 -0.5 2,794,944 - PFR28_02340 0.56 +0.2 2,794,950 - PFR28_02340 0.56 +2.7 2,795,001 + PFR28_02340 0.59 +1.0
Or see this region's nucleotide sequence