Strain Fitness in Pseudomonas sp. RS175 around PFR28_00715

Experiment: Betaine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00714 and PFR28_00715 are separated by 50 nucleotidesPFR28_00715 and PFR28_00716 are separated by 159 nucleotidesPFR28_00716 and PFR28_00717 are separated by 32 nucleotides PFR28_00714: PFR28_00714 - Glyoxylate/hydroxypyruvate reductase A, at 754,916 to 755,848 _00714 PFR28_00715: PFR28_00715 - malonic semialdehyde reductase RutE, at 755,899 to 756,492 _00715 PFR28_00716: PFR28_00716 - hypothetical protein, at 756,652 to 757,101 _00716 PFR28_00717: PFR28_00717 - hypothetical protein, at 757,134 to 758,363 _00717 Position (kb) 755 756 757Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 754.952 kb on + strandat 754.952 kb on + strandat 754.952 kb on + strandat 754.952 kb on + strandat 754.952 kb on + strandat 754.953 kb on - strandat 755.131 kb on + strand, within PFR28_00714at 755.131 kb on + strand, within PFR28_00714at 755.131 kb on + strand, within PFR28_00714at 755.132 kb on - strand, within PFR28_00714at 755.213 kb on + strand, within PFR28_00714at 755.214 kb on - strand, within PFR28_00714at 755.214 kb on - strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.334 kb on + strand, within PFR28_00714at 755.396 kb on + strand, within PFR28_00714at 755.396 kb on + strand, within PFR28_00714at 755.396 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.531 kb on + strand, within PFR28_00714at 755.531 kb on + strand, within PFR28_00714at 755.531 kb on + strand, within PFR28_00714at 755.531 kb on + strand, within PFR28_00714at 755.532 kb on - strand, within PFR28_00714at 755.532 kb on - strand, within PFR28_00714at 755.532 kb on - strand, within PFR28_00714at 755.532 kb on - strand, within PFR28_00714at 755.564 kb on - strand, within PFR28_00714at 755.796 kb on - strandat 755.900 kb on + strandat 755.901 kb on - strandat 755.901 kb on - strandat 755.901 kb on - strandat 755.976 kb on - strand, within PFR28_00715at 755.976 kb on - strand, within PFR28_00715at 756.036 kb on - strand, within PFR28_00715at 756.036 kb on - strand, within PFR28_00715at 756.099 kb on + strand, within PFR28_00715at 756.320 kb on + strand, within PFR28_00715at 756.347 kb on + strand, within PFR28_00715at 756.347 kb on + strand, within PFR28_00715at 756.348 kb on - strand, within PFR28_00715at 756.534 kb on + strandat 756.534 kb on + strandat 756.534 kb on + strandat 756.534 kb on + strandat 756.534 kb on + strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.609 kb on + strandat 756.609 kb on + strandat 756.609 kb on + strandat 756.610 kb on - strandat 756.680 kb on + strandat 756.787 kb on + strand, within PFR28_00716at 756.787 kb on + strand, within PFR28_00716at 756.787 kb on + strand, within PFR28_00716at 756.787 kb on + strand, within PFR28_00716at 756.788 kb on - strand, within PFR28_00716at 756.788 kb on - strand, within PFR28_00716at 756.790 kb on + strand, within PFR28_00716at 756.790 kb on + strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 757.085 kb on + strandat 757.086 kb on - strandat 757.221 kb on + strandat 757.221 kb on + strandat 757.222 kb on - strandat 757.330 kb on - strand, within PFR28_00717at 757.426 kb on - strand, within PFR28_00717at 757.426 kb on - strand, within PFR28_00717

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Per-strain Table

Position Strand Gene LocusTag Fraction Betaine (C)
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754,952 + -0.2
754,952 + -2.9
754,952 + +0.2
754,952 + -1.1
754,952 + -1.3
754,953 - +0.4
755,131 + PFR28_00714 0.23 +0.6
755,131 + PFR28_00714 0.23 +1.8
755,131 + PFR28_00714 0.23 +0.3
755,132 - PFR28_00714 0.23 -0.7
755,213 + PFR28_00714 0.32 +1.6
755,214 - PFR28_00714 0.32 +1.1
755,214 - PFR28_00714 0.32 -2.6
755,225 + PFR28_00714 0.33 +1.9
755,225 + PFR28_00714 0.33 +1.2
755,225 + PFR28_00714 0.33 +0.0
755,225 + PFR28_00714 0.33 +1.6
755,225 + PFR28_00714 0.33 +0.2
755,225 + PFR28_00714 0.33 -0.0
755,225 + PFR28_00714 0.33 -0.4
755,225 + PFR28_00714 0.33 +1.6
755,225 + PFR28_00714 0.33 +1.1
755,225 + PFR28_00714 0.33 +0.8
755,225 + PFR28_00714 0.33 -2.7
755,225 + PFR28_00714 0.33 +2.4
755,225 + PFR28_00714 0.33 +0.2
755,225 + PFR28_00714 0.33 +1.5
755,225 + PFR28_00714 0.33 +0.1
755,225 + PFR28_00714 0.33 -1.0
755,225 + PFR28_00714 0.33 -3.5
755,225 + PFR28_00714 0.33 +0.2
755,225 + PFR28_00714 0.33 +1.7
755,226 - PFR28_00714 0.33 +0.0
755,226 - PFR28_00714 0.33 -2.2
755,226 - PFR28_00714 0.33 +5.2
755,226 - PFR28_00714 0.33 +0.9
755,226 - PFR28_00714 0.33 -3.1
755,226 - PFR28_00714 0.33 -0.5
755,226 - PFR28_00714 0.33 +0.1
755,226 - PFR28_00714 0.33 +0.9
755,226 - PFR28_00714 0.33 -0.7
755,226 - PFR28_00714 0.33 +0.5
755,226 - PFR28_00714 0.33 +2.1
755,226 - PFR28_00714 0.33 -1.6
755,226 - PFR28_00714 0.33 -1.0
755,226 - PFR28_00714 0.33 -1.5
755,226 - PFR28_00714 0.33 +1.0
755,334 + PFR28_00714 0.45 +2.6
755,396 + PFR28_00714 0.51 -0.1
755,396 + PFR28_00714 0.51 +1.2
755,396 + PFR28_00714 0.51 -0.7
755,486 + PFR28_00714 0.61 -2.8
755,486 + PFR28_00714 0.61 -2.9
755,486 + PFR28_00714 0.61 -0.6
755,486 + PFR28_00714 0.61 +0.6
755,486 + PFR28_00714 0.61 -1.1
755,486 + PFR28_00714 0.61 -1.0
755,487 - PFR28_00714 0.61 -1.2
755,487 - PFR28_00714 0.61 +2.3
755,487 - PFR28_00714 0.61 -1.4
755,487 - PFR28_00714 0.61 -0.8
755,487 - PFR28_00714 0.61 -3.1
755,487 - PFR28_00714 0.61 +1.8
755,487 - PFR28_00714 0.61 +0.9
755,487 - PFR28_00714 0.61 +0.1
755,487 - PFR28_00714 0.61 +2.8
755,487 - PFR28_00714 0.61 +2.0
755,531 + PFR28_00714 0.66 +1.2
755,531 + PFR28_00714 0.66 -1.2
755,531 + PFR28_00714 0.66 -1.4
755,531 + PFR28_00714 0.66 -0.3
755,532 - PFR28_00714 0.66 +1.2
755,532 - PFR28_00714 0.66 +2.0
755,532 - PFR28_00714 0.66 +1.6
755,532 - PFR28_00714 0.66 -1.0
755,564 - PFR28_00714 0.69 +2.4
755,796 - -1.6
755,900 + +0.7
755,901 - +0.1
755,901 - +2.3
755,901 - +1.0
755,976 - PFR28_00715 0.13 +2.5
755,976 - PFR28_00715 0.13 -0.8
756,036 - PFR28_00715 0.23 +0.7
756,036 - PFR28_00715 0.23 +1.0
756,099 + PFR28_00715 0.34 -1.4
756,320 + PFR28_00715 0.71 -1.6
756,347 + PFR28_00715 0.75 -0.4
756,347 + PFR28_00715 0.75 +1.4
756,348 - PFR28_00715 0.76 +0.7
756,534 + -0.1
756,534 + +1.6
756,534 + +1.6
756,534 + -0.8
756,534 + +0.1
756,535 - +0.6
756,535 - +0.4
756,535 - -3.2
756,535 - -0.5
756,535 - -0.4
756,535 - -0.8
756,535 - -1.1
756,535 - -1.8
756,535 - -2.0
756,535 - +0.5
756,609 + +2.5
756,609 + -0.5
756,609 + -0.6
756,610 - -0.7
756,680 + +1.0
756,787 + PFR28_00716 0.30 -1.1
756,787 + PFR28_00716 0.30 +1.8
756,787 + PFR28_00716 0.30 -0.0
756,787 + PFR28_00716 0.30 +0.0
756,788 - PFR28_00716 0.30 +1.4
756,788 - PFR28_00716 0.30 -1.7
756,790 + PFR28_00716 0.31 -0.7
756,790 + PFR28_00716 0.31 -1.6
756,791 - PFR28_00716 0.31 -0.1
756,791 - PFR28_00716 0.31 -3.5
756,791 - PFR28_00716 0.31 +0.9
756,791 - PFR28_00716 0.31 -0.8
756,791 - PFR28_00716 0.31 -0.6
757,085 + -3.7
757,086 - -0.5
757,221 + +1.0
757,221 + +0.2
757,222 - +0.8
757,330 - PFR28_00717 0.16 +1.5
757,426 - PFR28_00717 0.24 +0.4
757,426 - PFR28_00717 0.24 -0.7

Or see this region's nucleotide sequence