Strain Fitness in Pseudomonas sp. RS175 around PFR28_00576

Experiment: Betaine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00574 and PFR28_00575 are separated by 17 nucleotidesPFR28_00575 and PFR28_00576 are separated by 146 nucleotidesPFR28_00576 and PFR28_00577 are separated by 11 nucleotidesPFR28_00577 and PFR28_00578 are separated by 137 nucleotides PFR28_00574: PFR28_00574 - 6-phosphogluconolactonase, at 616,140 to 616,853 _00574 PFR28_00575: PFR28_00575 - 2-dehydro-3-deoxy-phosphogluconate aldolase, at 616,871 to 617,536 _00575 PFR28_00576: PFR28_00576 - Isopenicillin N epimerase, at 617,683 to 618,870 _00576 PFR28_00577: PFR28_00577 - hypothetical protein, at 618,882 to 619,187 _00577 PFR28_00578: PFR28_00578 - hypothetical protein, at 619,325 to 619,789 _00578 Position (kb) 617 618 619Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 616.729 kb on + strand, within PFR28_00574at 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.831 kb on + strandat 616.839 kb on + strandat 616.839 kb on + strandat 617.564 kb on - strandat 617.564 kb on - strandat 617.564 kb on - strandat 617.571 kb on + strandat 617.571 kb on + strandat 617.572 kb on - strandat 617.684 kb on + strandat 617.684 kb on + strandat 617.684 kb on + strandat 617.685 kb on - strandat 617.685 kb on - strandat 617.685 kb on - strandat 617.688 kb on + strandat 617.688 kb on + strandat 617.689 kb on - strandat 617.689 kb on - strandat 617.811 kb on - strand, within PFR28_00576at 617.886 kb on - strand, within PFR28_00576at 617.886 kb on - strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.070 kb on - strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.150 kb on - strand, within PFR28_00576at 618.150 kb on - strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.348 kb on - strand, within PFR28_00576at 618.348 kb on - strand, within PFR28_00576at 618.348 kb on - strand, within PFR28_00576at 618.348 kb on - strand, within PFR28_00576at 618.398 kb on + strand, within PFR28_00576at 618.398 kb on + strand, within PFR28_00576at 618.506 kb on + strand, within PFR28_00576at 618.506 kb on + strand, within PFR28_00576at 618.507 kb on - strand, within PFR28_00576at 618.554 kb on + strand, within PFR28_00576at 618.554 kb on + strand, within PFR28_00576at 618.554 kb on + strand, within PFR28_00576at 618.554 kb on + strand, within PFR28_00576at 618.554 kb on + strand, within PFR28_00576at 618.554 kb on + strand, within PFR28_00576at 618.554 kb on + strand, within PFR28_00576at 618.554 kb on + strand, within PFR28_00576at 618.555 kb on - strand, within PFR28_00576at 618.555 kb on - strand, within PFR28_00576at 618.562 kb on + strand, within PFR28_00576at 618.677 kb on + strand, within PFR28_00576at 618.677 kb on + strand, within PFR28_00576at 618.689 kb on + strand, within PFR28_00576at 618.689 kb on + strand, within PFR28_00576at 618.690 kb on - strand, within PFR28_00576at 618.690 kb on - strand, within PFR28_00576at 618.690 kb on - strand, within PFR28_00576at 618.690 kb on - strand, within PFR28_00576at 618.690 kb on - strand, within PFR28_00576at 618.731 kb on + strand, within PFR28_00576at 618.732 kb on - strand, within PFR28_00576at 618.732 kb on - strand, within PFR28_00576at 618.768 kb on - strandat 618.854 kb on - strandat 618.854 kb on - strandat 619.027 kb on + strand, within PFR28_00577at 619.028 kb on - strand, within PFR28_00577at 619.063 kb on + strand, within PFR28_00577at 619.063 kb on + strand, within PFR28_00577at 619.063 kb on + strand, within PFR28_00577at 619.063 kb on + strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.064 kb on - strand, within PFR28_00577at 619.152 kb on - strand, within PFR28_00577at 619.194 kb on - strandat 619.299 kb on + strandat 619.302 kb on + strandat 619.303 kb on - strandat 619.381 kb on + strand, within PFR28_00578at 619.382 kb on - strand, within PFR28_00578at 619.655 kb on + strand, within PFR28_00578at 619.656 kb on - strand, within PFR28_00578at 619.656 kb on - strand, within PFR28_00578at 619.688 kb on - strand, within PFR28_00578at 619.688 kb on - strand, within PFR28_00578at 619.724 kb on + strand, within PFR28_00578at 619.725 kb on - strand, within PFR28_00578at 619.725 kb on - strand, within PFR28_00578at 619.768 kb on + strandat 619.787 kb on + strandat 619.787 kb on + strandat 619.787 kb on + strandat 619.787 kb on + strandat 619.788 kb on - strandat 619.788 kb on - strandat 619.788 kb on - strandat 619.788 kb on - strandat 619.788 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Betaine (C)
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616,729 + PFR28_00574 0.82 -0.3
616,826 + +2.0
616,826 + +1.0
616,826 + +0.4
616,826 + +0.4
616,826 + -0.7
616,826 + -1.8
616,826 + +2.4
616,826 + +1.7
616,826 + -0.2
616,826 + +1.5
616,826 + +0.4
616,831 + +0.7
616,839 + -1.9
616,839 + -1.7
617,564 - -0.6
617,564 - +1.4
617,564 - +0.8
617,571 + -2.7
617,571 + -0.1
617,572 - +3.0
617,684 + +1.7
617,684 + +1.0
617,684 + +2.3
617,685 - -1.2
617,685 - -1.3
617,685 - -2.4
617,688 + +1.7
617,688 + -0.5
617,689 - -0.0
617,689 - -0.3
617,811 - PFR28_00576 0.11 +0.9
617,886 - PFR28_00576 0.17 -3.1
617,886 - PFR28_00576 0.17 -0.2
618,005 + PFR28_00576 0.27 -2.5
618,005 + PFR28_00576 0.27 -2.2
618,005 + PFR28_00576 0.27 +2.7
618,005 + PFR28_00576 0.27 +0.5
618,005 + PFR28_00576 0.27 +0.7
618,005 + PFR28_00576 0.27 -2.3
618,006 - PFR28_00576 0.27 +0.9
618,006 - PFR28_00576 0.27 +2.2
618,006 - PFR28_00576 0.27 -1.5
618,006 - PFR28_00576 0.27 -1.1
618,006 - PFR28_00576 0.27 -1.6
618,006 - PFR28_00576 0.27 -2.5
618,006 - PFR28_00576 0.27 -1.4
618,006 - PFR28_00576 0.27 -0.7
618,070 - PFR28_00576 0.33 -1.9
618,149 + PFR28_00576 0.39 +0.4
618,149 + PFR28_00576 0.39 -2.0
618,149 + PFR28_00576 0.39 -1.5
618,149 + PFR28_00576 0.39 -1.0
618,149 + PFR28_00576 0.39 -1.8
618,149 + PFR28_00576 0.39 -1.3
618,150 - PFR28_00576 0.39 -1.4
618,150 - PFR28_00576 0.39 +0.9
618,347 + PFR28_00576 0.56 -0.1
618,347 + PFR28_00576 0.56 +1.4
618,347 + PFR28_00576 0.56 +1.9
618,347 + PFR28_00576 0.56 -0.7
618,347 + PFR28_00576 0.56 +1.7
618,348 - PFR28_00576 0.56 -0.1
618,348 - PFR28_00576 0.56 -0.8
618,348 - PFR28_00576 0.56 +0.9
618,348 - PFR28_00576 0.56 +1.5
618,398 + PFR28_00576 0.60 +1.1
618,398 + PFR28_00576 0.60 -0.0
618,506 + PFR28_00576 0.69 -0.7
618,506 + PFR28_00576 0.69 +2.3
618,507 - PFR28_00576 0.69 -2.1
618,554 + PFR28_00576 0.73 -1.7
618,554 + PFR28_00576 0.73 +0.1
618,554 + PFR28_00576 0.73 -1.4
618,554 + PFR28_00576 0.73 -1.1
618,554 + PFR28_00576 0.73 +3.8
618,554 + PFR28_00576 0.73 -1.1
618,554 + PFR28_00576 0.73 +2.0
618,554 + PFR28_00576 0.73 +0.4
618,555 - PFR28_00576 0.73 -2.5
618,555 - PFR28_00576 0.73 -0.0
618,562 + PFR28_00576 0.74 +2.9
618,677 + PFR28_00576 0.84 +0.5
618,677 + PFR28_00576 0.84 -1.2
618,689 + PFR28_00576 0.85 +1.5
618,689 + PFR28_00576 0.85 +0.5
618,690 - PFR28_00576 0.85 +0.4
618,690 - PFR28_00576 0.85 -0.3
618,690 - PFR28_00576 0.85 +0.8
618,690 - PFR28_00576 0.85 +0.5
618,690 - PFR28_00576 0.85 -0.6
618,731 + PFR28_00576 0.88 -0.9
618,732 - PFR28_00576 0.88 -3.0
618,732 - PFR28_00576 0.88 +0.1
618,768 - -0.5
618,854 - +0.7
618,854 - +0.4
619,027 + PFR28_00577 0.47 -1.5
619,028 - PFR28_00577 0.48 -1.6
619,063 + PFR28_00577 0.59 -1.2
619,063 + PFR28_00577 0.59 +0.5
619,063 + PFR28_00577 0.59 +1.8
619,063 + PFR28_00577 0.59 +0.7
619,064 - PFR28_00577 0.59 +0.5
619,064 - PFR28_00577 0.59 +2.1
619,064 - PFR28_00577 0.59 -1.2
619,064 - PFR28_00577 0.59 +1.3
619,064 - PFR28_00577 0.59 -1.5
619,064 - PFR28_00577 0.59 -0.4
619,064 - PFR28_00577 0.59 +2.0
619,064 - PFR28_00577 0.59 +0.7
619,064 - PFR28_00577 0.59 -0.0
619,064 - PFR28_00577 0.59 +1.3
619,152 - PFR28_00577 0.88 +1.9
619,194 - +1.7
619,299 + +0.1
619,302 + +0.4
619,303 - -0.2
619,381 + PFR28_00578 0.12 +0.5
619,382 - PFR28_00578 0.12 +1.7
619,655 + PFR28_00578 0.71 -2.5
619,656 - PFR28_00578 0.71 -0.0
619,656 - PFR28_00578 0.71 +1.9
619,688 - PFR28_00578 0.78 -0.6
619,688 - PFR28_00578 0.78 -1.5
619,724 + PFR28_00578 0.86 +1.5
619,725 - PFR28_00578 0.86 +0.9
619,725 - PFR28_00578 0.86 -2.1
619,768 + +0.2
619,787 + -0.2
619,787 + -0.9
619,787 + -0.3
619,787 + -1.5
619,788 - -0.7
619,788 - -1.3
619,788 - +1.1
619,788 - -0.4
619,788 - -0.1

Or see this region's nucleotide sequence