Strain Fitness in Pseudomonas sp. RS175 around PFR28_00432

Experiment: Betaine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00431 and PFR28_00432 are separated by 670 nucleotidesPFR28_00432 and PFR28_00433 are separated by 85 nucleotidesPFR28_00433 and PFR28_00434 are separated by 129 nucleotides PFR28_00431: PFR28_00431 - HTH-type transcriptional regulator PrtR, at 474,660 to 475,394 _00431 PFR28_00432: PFR28_00432 - hypothetical protein, at 476,065 to 476,709 _00432 PFR28_00433: PFR28_00433 - hypothetical protein, at 476,795 to 477,223 _00433 PFR28_00434: PFR28_00434 - hypothetical protein, at 477,353 to 477,703 _00434 Position (kb) 476 477Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 475.411 kb on + strandat 475.411 kb on + strandat 475.411 kb on + strandat 475.412 kb on - strandat 475.412 kb on - strandat 475.412 kb on - strandat 475.412 kb on - strandat 475.412 kb on - strandat 475.465 kb on + strandat 475.598 kb on - strandat 475.598 kb on - strandat 476.020 kb on - strandat 476.118 kb on - strandat 476.139 kb on + strand, within PFR28_00432at 476.173 kb on + strand, within PFR28_00432at 476.173 kb on + strand, within PFR28_00432at 476.173 kb on + strand, within PFR28_00432at 476.173 kb on + strand, within PFR28_00432at 476.173 kb on + strand, within PFR28_00432at 476.173 kb on + strand, within PFR28_00432at 476.173 kb on + strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.254 kb on + strand, within PFR28_00432at 476.254 kb on + strand, within PFR28_00432at 476.254 kb on + strand, within PFR28_00432at 476.254 kb on + strand, within PFR28_00432at 476.254 kb on + strand, within PFR28_00432at 476.255 kb on - strand, within PFR28_00432at 476.255 kb on - strand, within PFR28_00432at 476.255 kb on - strand, within PFR28_00432at 476.255 kb on - strand, within PFR28_00432at 476.255 kb on - strand, within PFR28_00432at 476.255 kb on - strand, within PFR28_00432at 476.255 kb on - strand, within PFR28_00432at 476.255 kb on - strand, within PFR28_00432at 476.269 kb on - strand, within PFR28_00432at 476.289 kb on + strand, within PFR28_00432at 476.290 kb on - strand, within PFR28_00432at 476.295 kb on + strand, within PFR28_00432at 476.343 kb on + strand, within PFR28_00432at 476.368 kb on - strand, within PFR28_00432at 476.523 kb on + strand, within PFR28_00432at 476.523 kb on + strand, within PFR28_00432at 476.592 kb on + strand, within PFR28_00432at 476.592 kb on + strand, within PFR28_00432at 476.592 kb on + strand, within PFR28_00432at 476.592 kb on + strand, within PFR28_00432at 476.593 kb on - strand, within PFR28_00432at 476.593 kb on - strand, within PFR28_00432at 476.593 kb on - strand, within PFR28_00432at 476.593 kb on - strand, within PFR28_00432at 476.593 kb on - strand, within PFR28_00432at 476.638 kb on + strand, within PFR28_00432at 476.701 kb on - strandat 476.716 kb on + strandat 476.717 kb on - strandat 476.750 kb on + strandat 476.750 kb on + strandat 476.750 kb on + strandat 476.751 kb on - strandat 476.775 kb on + strandat 476.776 kb on - strandat 476.776 kb on - strandat 476.776 kb on - strandat 476.776 kb on - strandat 476.776 kb on - strandat 476.780 kb on - strandat 476.780 kb on - strandat 476.897 kb on + strand, within PFR28_00433at 476.897 kb on + strand, within PFR28_00433at 476.897 kb on + strand, within PFR28_00433at 476.897 kb on + strand, within PFR28_00433at 476.898 kb on - strand, within PFR28_00433at 476.898 kb on - strand, within PFR28_00433at 476.898 kb on - strand, within PFR28_00433at 476.898 kb on - strand, within PFR28_00433at 476.898 kb on - strand, within PFR28_00433at 476.921 kb on + strand, within PFR28_00433at 476.957 kb on - strand, within PFR28_00433at 476.957 kb on - strand, within PFR28_00433at 477.109 kb on + strand, within PFR28_00433at 477.109 kb on + strand, within PFR28_00433at 477.110 kb on - strand, within PFR28_00433at 477.110 kb on - strand, within PFR28_00433at 477.110 kb on - strand, within PFR28_00433at 477.122 kb on + strand, within PFR28_00433at 477.173 kb on + strand, within PFR28_00433at 477.173 kb on + strand, within PFR28_00433at 477.173 kb on + strand, within PFR28_00433at 477.173 kb on + strand, within PFR28_00433at 477.174 kb on - strand, within PFR28_00433at 477.174 kb on - strand, within PFR28_00433at 477.174 kb on - strand, within PFR28_00433at 477.174 kb on - strand, within PFR28_00433at 477.179 kb on + strand, within PFR28_00433at 477.179 kb on + strand, within PFR28_00433at 477.180 kb on - strand, within PFR28_00433at 477.180 kb on - strand, within PFR28_00433at 477.180 kb on - strand, within PFR28_00433at 477.191 kb on + strandat 477.294 kb on + strandat 477.294 kb on + strandat 477.294 kb on + strandat 477.294 kb on + strandat 477.294 kb on + strandat 477.294 kb on + strandat 477.295 kb on - strandat 477.295 kb on - strandat 477.295 kb on - strandat 477.317 kb on + strandat 477.318 kb on - strandat 477.331 kb on + strandat 477.331 kb on + strandat 477.332 kb on - strandat 477.332 kb on - strandat 477.545 kb on + strand, within PFR28_00434at 477.545 kb on + strand, within PFR28_00434at 477.545 kb on + strand, within PFR28_00434at 477.545 kb on + strand, within PFR28_00434at 477.545 kb on + strand, within PFR28_00434at 477.545 kb on + strand, within PFR28_00434at 477.545 kb on + strand, within PFR28_00434at 477.545 kb on + strand, within PFR28_00434at 477.545 kb on + strand, within PFR28_00434at 477.545 kb on + strand, within PFR28_00434at 477.546 kb on - strand, within PFR28_00434at 477.630 kb on - strand, within PFR28_00434at 477.630 kb on - strand, within PFR28_00434at 477.659 kb on - strand, within PFR28_00434

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Per-strain Table

Position Strand Gene LocusTag Fraction Betaine (C)
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475,411 + +0.8
475,411 + +0.3
475,411 + -1.2
475,412 - -0.5
475,412 - -0.9
475,412 - -2.0
475,412 - -0.3
475,412 - -1.9
475,465 + +1.5
475,598 - +2.2
475,598 - +0.5
476,020 - +1.9
476,118 - +2.4
476,139 + PFR28_00432 0.11 +1.7
476,173 + PFR28_00432 0.17 +0.9
476,173 + PFR28_00432 0.17 +1.3
476,173 + PFR28_00432 0.17 -1.6
476,173 + PFR28_00432 0.17 -0.2
476,173 + PFR28_00432 0.17 +0.5
476,173 + PFR28_00432 0.17 -0.3
476,173 + PFR28_00432 0.17 -0.2
476,174 - PFR28_00432 0.17 -0.8
476,174 - PFR28_00432 0.17 +3.4
476,174 - PFR28_00432 0.17 +0.8
476,174 - PFR28_00432 0.17 -0.4
476,174 - PFR28_00432 0.17 +0.3
476,174 - PFR28_00432 0.17 +0.9
476,174 - PFR28_00432 0.17 -1.8
476,174 - PFR28_00432 0.17 -1.6
476,174 - PFR28_00432 0.17 -0.1
476,254 + PFR28_00432 0.29 +3.7
476,254 + PFR28_00432 0.29 +0.3
476,254 + PFR28_00432 0.29 -1.6
476,254 + PFR28_00432 0.29 +1.3
476,254 + PFR28_00432 0.29 +2.0
476,255 - PFR28_00432 0.29 +3.3
476,255 - PFR28_00432 0.29 -0.4
476,255 - PFR28_00432 0.29 -2.5
476,255 - PFR28_00432 0.29 +1.0
476,255 - PFR28_00432 0.29 +1.7
476,255 - PFR28_00432 0.29 +0.4
476,255 - PFR28_00432 0.29 -0.8
476,255 - PFR28_00432 0.29 +4.1
476,269 - PFR28_00432 0.32 +1.8
476,289 + PFR28_00432 0.35 -2.5
476,290 - PFR28_00432 0.35 +0.2
476,295 + PFR28_00432 0.36 -0.5
476,343 + PFR28_00432 0.43 +1.0
476,368 - PFR28_00432 0.47 -0.4
476,523 + PFR28_00432 0.71 -1.5
476,523 + PFR28_00432 0.71 +1.8
476,592 + PFR28_00432 0.82 -0.6
476,592 + PFR28_00432 0.82 -1.8
476,592 + PFR28_00432 0.82 +0.8
476,592 + PFR28_00432 0.82 -0.4
476,593 - PFR28_00432 0.82 -1.1
476,593 - PFR28_00432 0.82 -1.4
476,593 - PFR28_00432 0.82 -1.4
476,593 - PFR28_00432 0.82 +2.6
476,593 - PFR28_00432 0.82 -0.8
476,638 + PFR28_00432 0.89 +0.2
476,701 - +1.8
476,716 + +0.7
476,717 - +1.3
476,750 + -1.6
476,750 + +0.6
476,750 + -1.4
476,751 - -3.2
476,775 + +0.3
476,776 - -0.6
476,776 - +1.8
476,776 - -0.9
476,776 - +0.6
476,776 - +1.0
476,780 - -0.7
476,780 - -1.0
476,897 + PFR28_00433 0.24 -2.2
476,897 + PFR28_00433 0.24 -2.2
476,897 + PFR28_00433 0.24 +0.3
476,897 + PFR28_00433 0.24 +1.4
476,898 - PFR28_00433 0.24 +0.7
476,898 - PFR28_00433 0.24 +0.7
476,898 - PFR28_00433 0.24 -0.6
476,898 - PFR28_00433 0.24 -0.7
476,898 - PFR28_00433 0.24 -0.3
476,921 + PFR28_00433 0.29 +2.6
476,957 - PFR28_00433 0.38 -1.8
476,957 - PFR28_00433 0.38 +1.4
477,109 + PFR28_00433 0.73 -1.3
477,109 + PFR28_00433 0.73 -1.4
477,110 - PFR28_00433 0.73 +0.4
477,110 - PFR28_00433 0.73 +2.5
477,110 - PFR28_00433 0.73 +3.5
477,122 + PFR28_00433 0.76 +1.6
477,173 + PFR28_00433 0.88 -3.4
477,173 + PFR28_00433 0.88 -1.7
477,173 + PFR28_00433 0.88 +0.6
477,173 + PFR28_00433 0.88 -1.4
477,174 - PFR28_00433 0.88 -0.2
477,174 - PFR28_00433 0.88 -1.0
477,174 - PFR28_00433 0.88 -1.4
477,174 - PFR28_00433 0.88 -1.4
477,179 + PFR28_00433 0.90 +2.4
477,179 + PFR28_00433 0.90 -1.2
477,180 - PFR28_00433 0.90 -2.6
477,180 - PFR28_00433 0.90 -0.9
477,180 - PFR28_00433 0.90 +0.6
477,191 + +2.4
477,294 + +0.0
477,294 + -2.5
477,294 + +0.3
477,294 + -1.5
477,294 + +0.4
477,294 + +1.0
477,295 - +0.4
477,295 - -0.5
477,295 - +1.6
477,317 + -1.1
477,318 - -0.1
477,331 + -0.2
477,331 + -4.4
477,332 - +3.8
477,332 - +2.0
477,545 + PFR28_00434 0.55 -1.9
477,545 + PFR28_00434 0.55 +0.2
477,545 + PFR28_00434 0.55 -2.3
477,545 + PFR28_00434 0.55 +0.5
477,545 + PFR28_00434 0.55 -1.3
477,545 + PFR28_00434 0.55 +0.7
477,545 + PFR28_00434 0.55 +0.0
477,545 + PFR28_00434 0.55 -2.6
477,545 + PFR28_00434 0.55 -0.6
477,545 + PFR28_00434 0.55 +1.3
477,546 - PFR28_00434 0.55 +1.9
477,630 - PFR28_00434 0.79 -2.5
477,630 - PFR28_00434 0.79 +1.4
477,659 - PFR28_00434 0.87 +1.0

Or see this region's nucleotide sequence