Strain Fitness in Pseudomonas sp. RS175 around PFR28_00238

Experiment: Betaine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00236 and PFR28_00237 are separated by 158 nucleotidesPFR28_00237 and PFR28_00238 are separated by 148 nucleotidesPFR28_00238 and PFR28_00239 are separated by 237 nucleotides PFR28_00236: PFR28_00236 - hypothetical protein, at 262,678 to 263,346 _00236 PFR28_00237: PFR28_00237 - hypothetical protein, at 263,505 to 263,840 _00237 PFR28_00238: PFR28_00238 - Chemotaxis protein CheV, at 263,989 to 264,891 _00238 PFR28_00239: PFR28_00239 - Nitric oxide reductase transcription regulator NorR2, at 265,129 to 266,685 _00239 Position (kb) 263 264 265Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 263.105 kb on + strand, within PFR28_00236at 263.105 kb on + strand, within PFR28_00236at 263.105 kb on + strand, within PFR28_00236at 263.105 kb on + strand, within PFR28_00236at 263.105 kb on + strand, within PFR28_00236at 263.106 kb on - strand, within PFR28_00236at 263.106 kb on - strand, within PFR28_00236at 263.135 kb on + strand, within PFR28_00236at 263.135 kb on + strand, within PFR28_00236at 263.135 kb on + strand, within PFR28_00236at 263.135 kb on + strand, within PFR28_00236at 263.136 kb on - strand, within PFR28_00236at 263.136 kb on - strand, within PFR28_00236at 263.186 kb on + strand, within PFR28_00236at 263.187 kb on - strand, within PFR28_00236at 263.404 kb on + strandat 263.405 kb on - strandat 263.467 kb on - strandat 263.495 kb on + strandat 263.496 kb on - strandat 263.551 kb on + strand, within PFR28_00237at 263.551 kb on + strand, within PFR28_00237at 263.551 kb on + strand, within PFR28_00237at 263.552 kb on - strand, within PFR28_00237at 263.552 kb on - strand, within PFR28_00237at 263.552 kb on - strand, within PFR28_00237at 263.575 kb on + strand, within PFR28_00237at 263.575 kb on + strand, within PFR28_00237at 263.575 kb on + strand, within PFR28_00237at 263.576 kb on - strand, within PFR28_00237at 263.576 kb on - strand, within PFR28_00237at 263.624 kb on - strand, within PFR28_00237at 263.650 kb on + strand, within PFR28_00237at 263.813 kb on - strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.874 kb on - strandat 263.874 kb on - strandat 263.874 kb on - strandat 263.874 kb on - strandat 263.874 kb on - strandat 263.875 kb on + strandat 263.875 kb on + strandat 263.876 kb on - strandat 263.876 kb on - strandat 263.876 kb on - strandat 263.876 kb on - strandat 264.140 kb on + strand, within PFR28_00238at 264.140 kb on + strand, within PFR28_00238at 264.140 kb on + strand, within PFR28_00238at 264.140 kb on + strand, within PFR28_00238at 264.140 kb on + strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.188 kb on + strand, within PFR28_00238at 264.391 kb on + strand, within PFR28_00238at 264.478 kb on + strand, within PFR28_00238at 264.478 kb on + strand, within PFR28_00238at 264.479 kb on - strand, within PFR28_00238at 264.479 kb on - strand, within PFR28_00238at 264.742 kb on + strand, within PFR28_00238at 264.742 kb on + strand, within PFR28_00238at 264.742 kb on + strand, within PFR28_00238at 264.742 kb on + strand, within PFR28_00238at 264.743 kb on - strand, within PFR28_00238at 264.843 kb on + strandat 264.843 kb on + strandat 264.843 kb on + strandat 264.844 kb on - strandat 264.844 kb on - strandat 264.891 kb on + strandat 264.891 kb on + strandat 264.891 kb on + strandat 264.891 kb on + strandat 264.892 kb on - strandat 264.892 kb on - strandat 264.892 kb on - strandat 264.906 kb on + strandat 264.906 kb on + strandat 264.951 kb on - strandat 264.982 kb on + strandat 264.982 kb on + strandat 265.034 kb on - strandat 265.069 kb on + strandat 265.070 kb on - strandat 265.130 kb on + strandat 265.130 kb on + strandat 265.130 kb on + strandat 265.130 kb on + strandat 265.131 kb on - strandat 265.131 kb on - strandat 265.131 kb on - strandat 265.275 kb on + strandat 265.275 kb on + strandat 265.275 kb on + strandat 265.276 kb on - strandat 265.458 kb on + strand, within PFR28_00239at 265.458 kb on + strand, within PFR28_00239at 265.458 kb on + strand, within PFR28_00239at 265.472 kb on + strand, within PFR28_00239at 265.472 kb on + strand, within PFR28_00239at 265.473 kb on - strand, within PFR28_00239at 265.473 kb on - strand, within PFR28_00239at 265.600 kb on + strand, within PFR28_00239at 265.614 kb on - strand, within PFR28_00239at 265.631 kb on + strand, within PFR28_00239at 265.631 kb on + strand, within PFR28_00239at 265.631 kb on + strand, within PFR28_00239at 265.631 kb on + strand, within PFR28_00239at 265.631 kb on + strand, within PFR28_00239at 265.632 kb on - strand, within PFR28_00239at 265.632 kb on - strand, within PFR28_00239at 265.632 kb on - strand, within PFR28_00239at 265.632 kb on - strand, within PFR28_00239at 265.632 kb on - strand, within PFR28_00239

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Per-strain Table

Position Strand Gene LocusTag Fraction Betaine (C)
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263,105 + PFR28_00236 0.64 -2.7
263,105 + PFR28_00236 0.64 -0.8
263,105 + PFR28_00236 0.64 +0.3
263,105 + PFR28_00236 0.64 -0.6
263,105 + PFR28_00236 0.64 -3.2
263,106 - PFR28_00236 0.64 -1.2
263,106 - PFR28_00236 0.64 +2.3
263,135 + PFR28_00236 0.68 +1.7
263,135 + PFR28_00236 0.68 +0.5
263,135 + PFR28_00236 0.68 +0.5
263,135 + PFR28_00236 0.68 -1.8
263,136 - PFR28_00236 0.68 -0.5
263,136 - PFR28_00236 0.68 +2.3
263,186 + PFR28_00236 0.76 +2.4
263,187 - PFR28_00236 0.76 -0.3
263,404 + -1.0
263,405 - -0.7
263,467 - -0.7
263,495 + +4.0
263,496 - +0.6
263,551 + PFR28_00237 0.14 +1.7
263,551 + PFR28_00237 0.14 -0.5
263,551 + PFR28_00237 0.14 -1.7
263,552 - PFR28_00237 0.14 -0.0
263,552 - PFR28_00237 0.14 -0.5
263,552 - PFR28_00237 0.14 +1.1
263,575 + PFR28_00237 0.21 +0.3
263,575 + PFR28_00237 0.21 +0.1
263,575 + PFR28_00237 0.21 -1.7
263,576 - PFR28_00237 0.21 +1.3
263,576 - PFR28_00237 0.21 -1.3
263,624 - PFR28_00237 0.35 -1.2
263,650 + PFR28_00237 0.43 +3.0
263,813 - -0.7
263,873 + -3.2
263,873 + +1.6
263,873 + +4.5
263,873 + -0.5
263,873 + -1.8
263,873 + -1.4
263,873 + -0.2
263,873 + +0.2
263,873 + -1.1
263,873 + -0.1
263,873 + -1.8
263,873 + +0.2
263,873 + +2.0
263,873 + +0.4
263,873 + -1.7
263,873 + -1.5
263,873 + -0.6
263,874 - +2.5
263,874 - -2.5
263,874 - -1.3
263,874 - -1.0
263,874 - +0.3
263,875 + -2.0
263,875 + +0.6
263,876 - +0.7
263,876 - -0.8
263,876 - -1.0
263,876 - -1.9
264,140 + PFR28_00238 0.17 -0.1
264,140 + PFR28_00238 0.17 -1.0
264,140 + PFR28_00238 0.17 -0.9
264,140 + PFR28_00238 0.17 -0.4
264,140 + PFR28_00238 0.17 -2.0
264,141 - PFR28_00238 0.17 -0.7
264,141 - PFR28_00238 0.17 -0.5
264,141 - PFR28_00238 0.17 -1.8
264,141 - PFR28_00238 0.17 +1.0
264,141 - PFR28_00238 0.17 +0.6
264,141 - PFR28_00238 0.17 +1.7
264,188 + PFR28_00238 0.22 -0.6
264,391 + PFR28_00238 0.45 +1.0
264,478 + PFR28_00238 0.54 +0.1
264,478 + PFR28_00238 0.54 -2.0
264,479 - PFR28_00238 0.54 +0.6
264,479 - PFR28_00238 0.54 +0.6
264,742 + PFR28_00238 0.83 +1.2
264,742 + PFR28_00238 0.83 +0.5
264,742 + PFR28_00238 0.83 -1.0
264,742 + PFR28_00238 0.83 -0.8
264,743 - PFR28_00238 0.83 +0.2
264,843 + -0.1
264,843 + -0.7
264,843 + +0.9
264,844 - -1.4
264,844 - -0.0
264,891 + -0.3
264,891 + -1.5
264,891 + +1.9
264,891 + +0.1
264,892 - +0.4
264,892 - +0.7
264,892 - +0.4
264,906 + -1.2
264,906 + +2.4
264,951 - +0.5
264,982 + +2.7
264,982 + +1.6
265,034 - +1.1
265,069 + +1.3
265,070 - -2.4
265,130 + -0.0
265,130 + -0.8
265,130 + -2.0
265,130 + -1.4
265,131 - +0.3
265,131 - -2.2
265,131 - -0.5
265,275 + +1.6
265,275 + +0.4
265,275 + +0.3
265,276 - -1.7
265,458 + PFR28_00239 0.21 +0.3
265,458 + PFR28_00239 0.21 +0.4
265,458 + PFR28_00239 0.21 -0.5
265,472 + PFR28_00239 0.22 +0.3
265,472 + PFR28_00239 0.22 -1.4
265,473 - PFR28_00239 0.22 -1.9
265,473 - PFR28_00239 0.22 +0.5
265,600 + PFR28_00239 0.30 +0.1
265,614 - PFR28_00239 0.31 +0.0
265,631 + PFR28_00239 0.32 -0.3
265,631 + PFR28_00239 0.32 +1.0
265,631 + PFR28_00239 0.32 +0.0
265,631 + PFR28_00239 0.32 -1.0
265,631 + PFR28_00239 0.32 -0.5
265,632 - PFR28_00239 0.32 -0.6
265,632 - PFR28_00239 0.32 -1.0
265,632 - PFR28_00239 0.32 +2.0
265,632 - PFR28_00239 0.32 -0.4
265,632 - PFR28_00239 0.32 +1.7

Or see this region's nucleotide sequence