Strain Fitness in Pseudomonas sp. RS175 around PFR28_00235

Experiment: Betaine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00234 and PFR28_00235 are separated by 76 nucleotidesPFR28_00235 and PFR28_00236 are separated by 147 nucleotidesPFR28_00236 and PFR28_00237 are separated by 158 nucleotides PFR28_00234: PFR28_00234 - hypothetical protein, at 260,580 to 261,482 _00234 PFR28_00235: PFR28_00235 - Glyoxylate/hydroxypyruvate reductase B, at 261,559 to 262,530 _00235 PFR28_00236: PFR28_00236 - hypothetical protein, at 262,678 to 263,346 _00236 PFR28_00237: PFR28_00237 - hypothetical protein, at 263,505 to 263,840 _00237 Position (kb) 261 262 263Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 260.595 kb on + strandat 260.595 kb on + strandat 260.595 kb on + strandat 260.596 kb on - strandat 260.608 kb on + strandat 260.609 kb on - strandat 260.609 kb on - strandat 260.609 kb on - strandat 260.609 kb on - strandat 260.921 kb on + strand, within PFR28_00234at 261.206 kb on + strand, within PFR28_00234at 261.207 kb on - strand, within PFR28_00234at 261.207 kb on - strand, within PFR28_00234at 261.213 kb on + strand, within PFR28_00234at 261.213 kb on + strand, within PFR28_00234at 261.213 kb on + strand, within PFR28_00234at 261.214 kb on - strand, within PFR28_00234at 261.214 kb on - strand, within PFR28_00234at 261.214 kb on - strand, within PFR28_00234at 261.214 kb on - strand, within PFR28_00234at 261.231 kb on + strand, within PFR28_00234at 261.232 kb on - strand, within PFR28_00234at 261.271 kb on - strand, within PFR28_00234at 261.312 kb on + strand, within PFR28_00234at 261.312 kb on + strand, within PFR28_00234at 261.312 kb on + strand, within PFR28_00234at 261.546 kb on + strandat 261.560 kb on + strandat 261.560 kb on + strandat 261.560 kb on + strandat 261.743 kb on + strand, within PFR28_00235at 261.743 kb on + strand, within PFR28_00235at 261.743 kb on + strand, within PFR28_00235at 262.254 kb on + strand, within PFR28_00235at 262.254 kb on + strand, within PFR28_00235at 262.254 kb on + strand, within PFR28_00235at 262.254 kb on + strand, within PFR28_00235at 262.255 kb on - strand, within PFR28_00235at 262.280 kb on + strand, within PFR28_00235at 262.281 kb on - strand, within PFR28_00235at 262.292 kb on + strand, within PFR28_00235at 262.292 kb on + strand, within PFR28_00235at 262.292 kb on + strand, within PFR28_00235at 262.292 kb on + strand, within PFR28_00235at 262.292 kb on + strand, within PFR28_00235at 262.293 kb on - strand, within PFR28_00235at 262.301 kb on + strand, within PFR28_00235at 262.302 kb on - strand, within PFR28_00235at 262.500 kb on + strandat 262.516 kb on + strandat 262.517 kb on - strandat 262.517 kb on - strandat 262.517 kb on - strandat 262.698 kb on + strandat 262.698 kb on + strandat 262.699 kb on - strandat 262.706 kb on + strandat 262.706 kb on + strandat 262.706 kb on + strandat 262.707 kb on - strandat 262.707 kb on - strandat 262.707 kb on - strandat 262.707 kb on - strandat 262.868 kb on + strand, within PFR28_00236at 263.105 kb on + strand, within PFR28_00236at 263.105 kb on + strand, within PFR28_00236at 263.105 kb on + strand, within PFR28_00236at 263.105 kb on + strand, within PFR28_00236at 263.105 kb on + strand, within PFR28_00236at 263.106 kb on - strand, within PFR28_00236at 263.106 kb on - strand, within PFR28_00236at 263.135 kb on + strand, within PFR28_00236at 263.135 kb on + strand, within PFR28_00236at 263.135 kb on + strand, within PFR28_00236at 263.135 kb on + strand, within PFR28_00236at 263.136 kb on - strand, within PFR28_00236at 263.136 kb on - strand, within PFR28_00236at 263.186 kb on + strand, within PFR28_00236at 263.187 kb on - strand, within PFR28_00236at 263.404 kb on + strandat 263.405 kb on - strandat 263.467 kb on - strandat 263.495 kb on + strandat 263.496 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Betaine (C)
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260,595 + +1.4
260,595 + -0.5
260,595 + +2.9
260,596 - -2.0
260,608 + +0.2
260,609 - -2.9
260,609 - +0.7
260,609 - +0.6
260,609 - +0.7
260,921 + PFR28_00234 0.38 +1.2
261,206 + PFR28_00234 0.69 -1.5
261,207 - PFR28_00234 0.69 -1.0
261,207 - PFR28_00234 0.69 +1.0
261,213 + PFR28_00234 0.70 -0.6
261,213 + PFR28_00234 0.70 -1.5
261,213 + PFR28_00234 0.70 -1.9
261,214 - PFR28_00234 0.70 -0.5
261,214 - PFR28_00234 0.70 +1.4
261,214 - PFR28_00234 0.70 +0.9
261,214 - PFR28_00234 0.70 -1.3
261,231 + PFR28_00234 0.72 -0.3
261,232 - PFR28_00234 0.72 -1.2
261,271 - PFR28_00234 0.77 +1.4
261,312 + PFR28_00234 0.81 -1.3
261,312 + PFR28_00234 0.81 +0.8
261,312 + PFR28_00234 0.81 -1.0
261,546 + +0.7
261,560 + -1.0
261,560 + -1.5
261,560 + -1.0
261,743 + PFR28_00235 0.19 -0.7
261,743 + PFR28_00235 0.19 -2.3
261,743 + PFR28_00235 0.19 -0.2
262,254 + PFR28_00235 0.72 +0.5
262,254 + PFR28_00235 0.72 -0.8
262,254 + PFR28_00235 0.72 +0.9
262,254 + PFR28_00235 0.72 +2.4
262,255 - PFR28_00235 0.72 +1.6
262,280 + PFR28_00235 0.74 +2.0
262,281 - PFR28_00235 0.74 +2.9
262,292 + PFR28_00235 0.75 -2.1
262,292 + PFR28_00235 0.75 -1.6
262,292 + PFR28_00235 0.75 +1.8
262,292 + PFR28_00235 0.75 +1.3
262,292 + PFR28_00235 0.75 -1.5
262,293 - PFR28_00235 0.76 +0.7
262,301 + PFR28_00235 0.76 -2.0
262,302 - PFR28_00235 0.76 +0.8
262,500 + -1.2
262,516 + -0.4
262,517 - -1.0
262,517 - +0.5
262,517 - -1.0
262,698 + -0.3
262,698 + +1.5
262,699 - -1.8
262,706 + +0.5
262,706 + +1.4
262,706 + +1.0
262,707 - -1.1
262,707 - +1.6
262,707 - +2.1
262,707 - +1.1
262,868 + PFR28_00236 0.28 +1.9
263,105 + PFR28_00236 0.64 -2.7
263,105 + PFR28_00236 0.64 -0.8
263,105 + PFR28_00236 0.64 +0.3
263,105 + PFR28_00236 0.64 -0.6
263,105 + PFR28_00236 0.64 -3.2
263,106 - PFR28_00236 0.64 -1.2
263,106 - PFR28_00236 0.64 +2.3
263,135 + PFR28_00236 0.68 +1.7
263,135 + PFR28_00236 0.68 +0.5
263,135 + PFR28_00236 0.68 +0.5
263,135 + PFR28_00236 0.68 -1.8
263,136 - PFR28_00236 0.68 -0.5
263,136 - PFR28_00236 0.68 +2.3
263,186 + PFR28_00236 0.76 +2.4
263,187 - PFR28_00236 0.76 -0.3
263,404 + -1.0
263,405 - -0.7
263,467 - -0.7
263,495 + +4.0
263,496 - +0.6

Or see this region's nucleotide sequence