Strain Fitness in Pseudomonas sp. RS175 around PFR28_00018

Experiment: 4-Guanidinobutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00017 and PFR28_00018 overlap by 4 nucleotidesPFR28_00018 and PFR28_00019 are separated by 3 nucleotides PFR28_00017: PFR28_00017 - Dapdiamide A synthase, at 23,372 to 24,676 _00017 PFR28_00018: PFR28_00018 - Na(+), Li(+), K(+)/H(+) antiporter, at 24,673 to 25,881 _00018 PFR28_00019: PFR28_00019 - putative cysteine desulfurase, at 25,885 to 27,000 _00019 Position (kb) 24 25 26Strain fitness (log2 ratio) -2 -1 0 1 2at 23.863 kb on + strand, within PFR28_00017at 23.863 kb on + strand, within PFR28_00017at 23.863 kb on + strand, within PFR28_00017at 23.863 kb on + strand, within PFR28_00017at 23.863 kb on + strand, within PFR28_00017at 23.864 kb on - strand, within PFR28_00017at 23.864 kb on - strand, within PFR28_00017at 23.963 kb on + strand, within PFR28_00017at 23.963 kb on + strand, within PFR28_00017at 23.963 kb on + strand, within PFR28_00017at 23.963 kb on + strand, within PFR28_00017at 23.963 kb on + strand, within PFR28_00017at 23.963 kb on + strand, within PFR28_00017at 23.964 kb on - strand, within PFR28_00017at 24.029 kb on + strand, within PFR28_00017at 24.030 kb on - strand, within PFR28_00017at 24.065 kb on + strand, within PFR28_00017at 24.065 kb on + strand, within PFR28_00017at 24.065 kb on + strand, within PFR28_00017at 24.065 kb on + strand, within PFR28_00017at 24.065 kb on + strand, within PFR28_00017at 24.065 kb on + strand, within PFR28_00017at 24.065 kb on + strand, within PFR28_00017at 24.065 kb on + strand, within PFR28_00017at 24.065 kb on + strand, within PFR28_00017at 24.066 kb on - strand, within PFR28_00017at 24.066 kb on - strand, within PFR28_00017at 24.066 kb on - strand, within PFR28_00017at 24.066 kb on - strand, within PFR28_00017at 24.066 kb on - strand, within PFR28_00017at 24.066 kb on - strand, within PFR28_00017at 24.066 kb on - strand, within PFR28_00017at 24.066 kb on - strand, within PFR28_00017at 24.066 kb on - strand, within PFR28_00017at 24.066 kb on - strand, within PFR28_00017at 24.125 kb on + strand, within PFR28_00017at 24.125 kb on + strand, within PFR28_00017at 24.125 kb on + strand, within PFR28_00017at 24.126 kb on - strand, within PFR28_00017at 24.126 kb on - strand, within PFR28_00017at 24.126 kb on - strand, within PFR28_00017at 24.164 kb on + strand, within PFR28_00017at 24.164 kb on + strand, within PFR28_00017at 24.165 kb on - strand, within PFR28_00017at 24.165 kb on - strand, within PFR28_00017at 24.183 kb on - strand, within PFR28_00017at 24.183 kb on - strand, within PFR28_00017at 24.183 kb on - strand, within PFR28_00017at 24.314 kb on + strand, within PFR28_00017at 24.314 kb on + strand, within PFR28_00017at 24.315 kb on - strand, within PFR28_00017at 24.315 kb on - strand, within PFR28_00017at 24.335 kb on - strand, within PFR28_00017at 24.416 kb on + strand, within PFR28_00017at 24.657 kb on - strandat 24.721 kb on + strandat 24.722 kb on - strandat 24.722 kb on - strandat 24.805 kb on + strand, within PFR28_00018at 24.806 kb on - strand, within PFR28_00018at 24.806 kb on - strand, within PFR28_00018at 24.806 kb on - strand, within PFR28_00018at 24.806 kb on - strand, within PFR28_00018at 24.892 kb on + strand, within PFR28_00018at 24.893 kb on - strand, within PFR28_00018at 25.037 kb on - strand, within PFR28_00018at 25.120 kb on + strand, within PFR28_00018at 25.120 kb on + strand, within PFR28_00018at 25.121 kb on - strand, within PFR28_00018at 25.121 kb on - strand, within PFR28_00018at 25.121 kb on - strand, within PFR28_00018at 25.121 kb on - strand, within PFR28_00018at 25.121 kb on - strand, within PFR28_00018at 25.121 kb on - strand, within PFR28_00018at 25.142 kb on - strand, within PFR28_00018at 25.241 kb on - strand, within PFR28_00018at 25.400 kb on - strand, within PFR28_00018at 25.400 kb on - strand, within PFR28_00018at 25.400 kb on - strand, within PFR28_00018at 25.411 kb on + strand, within PFR28_00018at 25.412 kb on - strand, within PFR28_00018at 25.412 kb on - strand, within PFR28_00018at 25.444 kb on + strand, within PFR28_00018at 25.445 kb on - strand, within PFR28_00018at 25.459 kb on + strand, within PFR28_00018at 25.459 kb on + strand, within PFR28_00018at 25.459 kb on + strand, within PFR28_00018at 25.459 kb on + strand, within PFR28_00018at 25.460 kb on - strand, within PFR28_00018at 25.501 kb on + strand, within PFR28_00018at 25.501 kb on + strand, within PFR28_00018at 25.501 kb on + strand, within PFR28_00018at 25.502 kb on - strand, within PFR28_00018at 25.502 kb on - strand, within PFR28_00018at 25.672 kb on + strand, within PFR28_00018at 25.673 kb on - strand, within PFR28_00018at 25.687 kb on + strand, within PFR28_00018at 25.687 kb on + strand, within PFR28_00018at 25.688 kb on - strand, within PFR28_00018at 25.688 kb on - strand, within PFR28_00018at 25.688 kb on - strand, within PFR28_00018at 25.688 kb on - strand, within PFR28_00018at 25.688 kb on - strand, within PFR28_00018at 25.792 kb on + strandat 25.793 kb on - strandat 25.793 kb on - strandat 25.852 kb on + strandat 25.852 kb on + strandat 25.852 kb on + strandat 25.951 kb on + strandat 25.951 kb on + strandat 25.952 kb on - strandat 25.952 kb on - strandat 26.158 kb on + strand, within PFR28_00019at 26.158 kb on + strand, within PFR28_00019at 26.159 kb on - strand, within PFR28_00019at 26.159 kb on - strand, within PFR28_00019at 26.159 kb on - strand, within PFR28_00019at 26.164 kb on + strand, within PFR28_00019at 26.190 kb on + strand, within PFR28_00019at 26.190 kb on + strand, within PFR28_00019at 26.191 kb on - strand, within PFR28_00019at 26.386 kb on + strand, within PFR28_00019at 26.386 kb on + strand, within PFR28_00019at 26.386 kb on + strand, within PFR28_00019at 26.386 kb on + strand, within PFR28_00019at 26.387 kb on - strand, within PFR28_00019at 26.840 kb on - strand, within PFR28_00019at 26.840 kb on - strand, within PFR28_00019at 26.876 kb on - strand, within PFR28_00019

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Guanidinobutyric (C)
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23,863 + PFR28_00017 0.38 +0.5
23,863 + PFR28_00017 0.38 -0.0
23,863 + PFR28_00017 0.38 +0.8
23,863 + PFR28_00017 0.38 -0.2
23,863 + PFR28_00017 0.38 -0.1
23,864 - PFR28_00017 0.38 -0.6
23,864 - PFR28_00017 0.38 -0.2
23,963 + PFR28_00017 0.45 -1.1
23,963 + PFR28_00017 0.45 +0.2
23,963 + PFR28_00017 0.45 -2.0
23,963 + PFR28_00017 0.45 +0.2
23,963 + PFR28_00017 0.45 +0.6
23,963 + PFR28_00017 0.45 -0.8
23,964 - PFR28_00017 0.45 -1.7
24,029 + PFR28_00017 0.50 -0.7
24,030 - PFR28_00017 0.50 -0.0
24,065 + PFR28_00017 0.53 -0.8
24,065 + PFR28_00017 0.53 +0.2
24,065 + PFR28_00017 0.53 +1.5
24,065 + PFR28_00017 0.53 -1.2
24,065 + PFR28_00017 0.53 +1.2
24,065 + PFR28_00017 0.53 +0.6
24,065 + PFR28_00017 0.53 +0.5
24,065 + PFR28_00017 0.53 +1.1
24,065 + PFR28_00017 0.53 -0.9
24,066 - PFR28_00017 0.53 +0.3
24,066 - PFR28_00017 0.53 -0.5
24,066 - PFR28_00017 0.53 -0.6
24,066 - PFR28_00017 0.53 +0.3
24,066 - PFR28_00017 0.53 +0.2
24,066 - PFR28_00017 0.53 +0.6
24,066 - PFR28_00017 0.53 +0.1
24,066 - PFR28_00017 0.53 -0.3
24,066 - PFR28_00017 0.53 +0.5
24,066 - PFR28_00017 0.53 +0.6
24,125 + PFR28_00017 0.58 +0.7
24,125 + PFR28_00017 0.58 -0.6
24,125 + PFR28_00017 0.58 +0.3
24,126 - PFR28_00017 0.58 +0.9
24,126 - PFR28_00017 0.58 -0.8
24,126 - PFR28_00017 0.58 +1.0
24,164 + PFR28_00017 0.61 -0.4
24,164 + PFR28_00017 0.61 -0.6
24,165 - PFR28_00017 0.61 +0.7
24,165 - PFR28_00017 0.61 -0.3
24,183 - PFR28_00017 0.62 +0.1
24,183 - PFR28_00017 0.62 +1.6
24,183 - PFR28_00017 0.62 -1.1
24,314 + PFR28_00017 0.72 -1.5
24,314 + PFR28_00017 0.72 +1.5
24,315 - PFR28_00017 0.72 +0.8
24,315 - PFR28_00017 0.72 +0.9
24,335 - PFR28_00017 0.74 +0.0
24,416 + PFR28_00017 0.80 -0.8
24,657 - +1.0
24,721 + +0.4
24,722 - +0.7
24,722 - -0.4
24,805 + PFR28_00018 0.11 +1.0
24,806 - PFR28_00018 0.11 +0.7
24,806 - PFR28_00018 0.11 +0.5
24,806 - PFR28_00018 0.11 -0.1
24,806 - PFR28_00018 0.11 +0.7
24,892 + PFR28_00018 0.18 +0.9
24,893 - PFR28_00018 0.18 +2.4
25,037 - PFR28_00018 0.30 -0.2
25,120 + PFR28_00018 0.37 +2.2
25,120 + PFR28_00018 0.37 +1.0
25,121 - PFR28_00018 0.37 -0.1
25,121 - PFR28_00018 0.37 +0.2
25,121 - PFR28_00018 0.37 +1.5
25,121 - PFR28_00018 0.37 +0.3
25,121 - PFR28_00018 0.37 +0.6
25,121 - PFR28_00018 0.37 -0.2
25,142 - PFR28_00018 0.39 +0.6
25,241 - PFR28_00018 0.47 +0.5
25,400 - PFR28_00018 0.60 +1.4
25,400 - PFR28_00018 0.60 +1.7
25,400 - PFR28_00018 0.60 -0.3
25,411 + PFR28_00018 0.61 +0.7
25,412 - PFR28_00018 0.61 -0.4
25,412 - PFR28_00018 0.61 +0.0
25,444 + PFR28_00018 0.64 +1.1
25,445 - PFR28_00018 0.64 +0.0
25,459 + PFR28_00018 0.65 -0.3
25,459 + PFR28_00018 0.65 +0.5
25,459 + PFR28_00018 0.65 +2.3
25,459 + PFR28_00018 0.65 +0.1
25,460 - PFR28_00018 0.65 +0.0
25,501 + PFR28_00018 0.68 +1.3
25,501 + PFR28_00018 0.68 +0.7
25,501 + PFR28_00018 0.68 +1.3
25,502 - PFR28_00018 0.69 +0.9
25,502 - PFR28_00018 0.69 +0.3
25,672 + PFR28_00018 0.83 +0.4
25,673 - PFR28_00018 0.83 +0.3
25,687 + PFR28_00018 0.84 +2.6
25,687 + PFR28_00018 0.84 -0.2
25,688 - PFR28_00018 0.84 +0.0
25,688 - PFR28_00018 0.84 -1.1
25,688 - PFR28_00018 0.84 +0.9
25,688 - PFR28_00018 0.84 -0.6
25,688 - PFR28_00018 0.84 +0.2
25,792 + +2.4
25,793 - -0.4
25,793 - +0.2
25,852 + +0.1
25,852 + +0.5
25,852 + +1.5
25,951 + -0.1
25,951 + -0.5
25,952 - -1.7
25,952 - -0.4
26,158 + PFR28_00019 0.24 -0.7
26,158 + PFR28_00019 0.24 -0.3
26,159 - PFR28_00019 0.25 +0.7
26,159 - PFR28_00019 0.25 -0.5
26,159 - PFR28_00019 0.25 -1.5
26,164 + PFR28_00019 0.25 -1.2
26,190 + PFR28_00019 0.27 -0.2
26,190 + PFR28_00019 0.27 -1.3
26,191 - PFR28_00019 0.27 +2.6
26,386 + PFR28_00019 0.45 +0.1
26,386 + PFR28_00019 0.45 -0.1
26,386 + PFR28_00019 0.45 +1.2
26,386 + PFR28_00019 0.45 +0.2
26,387 - PFR28_00019 0.45 -0.1
26,840 - PFR28_00019 0.86 +1.6
26,840 - PFR28_00019 0.86 +1.2
26,876 - PFR28_00019 0.89 -2.0

Or see this region's nucleotide sequence