Strain Fitness in Pseudomonas sp. RS175 around PFR28_00776

Experiment: 4-Guanidinobutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00775 and PFR28_00776 are separated by 153 nucleotidesPFR28_00776 and PFR28_00777 are separated by 54 nucleotidesPFR28_00777 and PFR28_00778 are separated by 7 nucleotides PFR28_00775: PFR28_00775 - Osmoregulated proline transporter OpuE, at 829,789 to 831,177 _00775 PFR28_00776: PFR28_00776 - hypothetical protein, at 831,331 to 832,884 _00776 PFR28_00777: PFR28_00777 - hypothetical protein, at 832,939 to 833,364 _00777 PFR28_00778: PFR28_00778 - Guanidinobutyrase, at 833,372 to 834,322 _00778 Position (kb) 831 832 833Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 830.376 kb on - strand, within PFR28_00775at 830.387 kb on + strand, within PFR28_00775at 830.388 kb on - strand, within PFR28_00775at 830.486 kb on + strand, within PFR28_00775at 830.486 kb on + strand, within PFR28_00775at 830.486 kb on + strand, within PFR28_00775at 830.486 kb on + strand, within PFR28_00775at 830.487 kb on - strand, within PFR28_00775at 830.487 kb on - strand, within PFR28_00775at 830.487 kb on - strand, within PFR28_00775at 830.487 kb on - strand, within PFR28_00775at 830.487 kb on - strand, within PFR28_00775at 830.487 kb on - strand, within PFR28_00775at 830.487 kb on - strand, within PFR28_00775at 830.498 kb on + strand, within PFR28_00775at 830.498 kb on + strand, within PFR28_00775at 830.498 kb on + strand, within PFR28_00775at 830.498 kb on + strand, within PFR28_00775at 830.499 kb on - strand, within PFR28_00775at 830.499 kb on - strand, within PFR28_00775at 830.499 kb on - strand, within PFR28_00775at 830.499 kb on - strand, within PFR28_00775at 830.499 kb on - strand, within PFR28_00775at 830.499 kb on - strand, within PFR28_00775at 830.499 kb on - strand, within PFR28_00775at 830.499 kb on - strand, within PFR28_00775at 830.499 kb on - strand, within PFR28_00775at 830.540 kb on + strand, within PFR28_00775at 830.541 kb on - strand, within PFR28_00775at 830.541 kb on - strand, within PFR28_00775at 830.541 kb on - strand, within PFR28_00775at 830.541 kb on - strand, within PFR28_00775at 830.541 kb on - strand, within PFR28_00775at 830.552 kb on - strand, within PFR28_00775at 830.690 kb on + strand, within PFR28_00775at 830.690 kb on + strand, within PFR28_00775at 830.691 kb on - strand, within PFR28_00775at 830.691 kb on - strand, within PFR28_00775at 830.691 kb on - strand, within PFR28_00775at 830.691 kb on - strand, within PFR28_00775at 830.691 kb on - strand, within PFR28_00775at 830.691 kb on - strand, within PFR28_00775at 830.691 kb on - strand, within PFR28_00775at 830.804 kb on + strand, within PFR28_00775at 830.804 kb on + strand, within PFR28_00775at 830.804 kb on + strand, within PFR28_00775at 830.804 kb on + strand, within PFR28_00775at 830.804 kb on + strand, within PFR28_00775at 830.805 kb on - strand, within PFR28_00775at 830.805 kb on - strand, within PFR28_00775at 830.805 kb on - strand, within PFR28_00775at 830.849 kb on + strand, within PFR28_00775at 830.849 kb on + strand, within PFR28_00775at 830.849 kb on + strand, within PFR28_00775at 830.850 kb on - strand, within PFR28_00775at 830.850 kb on - strand, within PFR28_00775at 830.879 kb on + strand, within PFR28_00775at 830.879 kb on + strand, within PFR28_00775at 830.879 kb on + strand, within PFR28_00775at 830.880 kb on - strand, within PFR28_00775at 830.981 kb on + strand, within PFR28_00775at 830.981 kb on + strand, within PFR28_00775at 830.981 kb on + strand, within PFR28_00775at 831.047 kb on + strandat 831.047 kb on + strandat 831.048 kb on - strandat 831.147 kb on - strandat 831.147 kb on - strandat 831.147 kb on - strandat 831.147 kb on - strandat 831.147 kb on - strandat 831.163 kb on + strandat 831.163 kb on + strandat 831.164 kb on - strandat 831.198 kb on - strandat 831.206 kb on + strandat 831.207 kb on - strandat 831.319 kb on + strandat 831.330 kb on - strandat 831.330 kb on - strandat 831.330 kb on - strandat 831.364 kb on + strandat 831.446 kb on + strandat 831.446 kb on + strandat 831.446 kb on + strandat 831.446 kb on + strandat 831.447 kb on - strandat 831.447 kb on - strandat 831.488 kb on + strand, within PFR28_00776at 831.489 kb on - strand, within PFR28_00776at 831.534 kb on + strand, within PFR28_00776at 831.710 kb on + strand, within PFR28_00776at 831.710 kb on + strand, within PFR28_00776at 831.711 kb on - strand, within PFR28_00776at 831.711 kb on - strand, within PFR28_00776at 831.711 kb on - strand, within PFR28_00776at 831.929 kb on + strand, within PFR28_00776at 831.929 kb on + strand, within PFR28_00776at 832.028 kb on + strand, within PFR28_00776at 832.028 kb on + strand, within PFR28_00776at 832.028 kb on + strand, within PFR28_00776at 832.028 kb on + strand, within PFR28_00776at 832.028 kb on + strand, within PFR28_00776at 832.029 kb on - strand, within PFR28_00776at 832.029 kb on - strand, within PFR28_00776at 832.029 kb on - strand, within PFR28_00776at 832.029 kb on - strand, within PFR28_00776at 832.029 kb on - strand, within PFR28_00776at 832.029 kb on - strand, within PFR28_00776at 832.029 kb on - strand, within PFR28_00776at 832.046 kb on + strand, within PFR28_00776at 832.046 kb on + strand, within PFR28_00776at 832.046 kb on + strand, within PFR28_00776at 832.046 kb on + strand, within PFR28_00776at 832.047 kb on - strand, within PFR28_00776at 832.047 kb on - strand, within PFR28_00776at 832.159 kb on - strand, within PFR28_00776at 832.159 kb on - strand, within PFR28_00776at 832.159 kb on - strand, within PFR28_00776at 832.159 kb on - strand, within PFR28_00776at 832.159 kb on - strand, within PFR28_00776at 832.173 kb on - strand, within PFR28_00776at 832.394 kb on + strand, within PFR28_00776at 832.395 kb on - strand, within PFR28_00776at 832.395 kb on - strand, within PFR28_00776at 832.395 kb on - strand, within PFR28_00776at 832.433 kb on + strand, within PFR28_00776at 832.762 kb on - strandat 832.762 kb on - strandat 832.841 kb on + strandat 832.857 kb on + strandat 832.866 kb on + strandat 832.866 kb on + strandat 832.867 kb on - strandat 832.867 kb on - strandat 832.867 kb on - strandat 832.878 kb on + strandat 832.878 kb on + strandat 832.878 kb on + strandat 832.879 kb on - strandat 832.879 kb on - strandat 832.940 kb on + strandat 832.973 kb on - strandat 832.996 kb on + strand, within PFR28_00777at 833.014 kb on + strand, within PFR28_00777at 833.014 kb on + strand, within PFR28_00777at 833.014 kb on + strand, within PFR28_00777at 833.014 kb on + strand, within PFR28_00777at 833.014 kb on + strand, within PFR28_00777at 833.015 kb on - strand, within PFR28_00777at 833.015 kb on - strand, within PFR28_00777at 833.015 kb on - strand, within PFR28_00777at 833.015 kb on - strand, within PFR28_00777at 833.015 kb on - strand, within PFR28_00777at 833.109 kb on + strand, within PFR28_00777at 833.109 kb on + strand, within PFR28_00777at 833.110 kb on - strand, within PFR28_00777at 833.214 kb on - strand, within PFR28_00777at 833.288 kb on + strand, within PFR28_00777at 833.288 kb on + strand, within PFR28_00777at 833.288 kb on + strand, within PFR28_00777at 833.288 kb on + strand, within PFR28_00777at 833.289 kb on - strand, within PFR28_00777at 833.289 kb on - strand, within PFR28_00777at 833.289 kb on - strand, within PFR28_00777at 833.289 kb on - strand, within PFR28_00777at 833.412 kb on + strandat 833.412 kb on + strandat 833.412 kb on + strandat 833.413 kb on - strandat 833.413 kb on - strandat 833.564 kb on - strand, within PFR28_00778at 833.616 kb on + strand, within PFR28_00778at 833.616 kb on + strand, within PFR28_00778at 833.616 kb on + strand, within PFR28_00778at 833.743 kb on + strand, within PFR28_00778at 833.745 kb on + strand, within PFR28_00778at 833.746 kb on - strand, within PFR28_00778at 833.771 kb on + strand, within PFR28_00778at 833.772 kb on - strand, within PFR28_00778at 833.772 kb on - strand, within PFR28_00778at 833.881 kb on + strand, within PFR28_00778

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Guanidinobutyric (C)
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830,376 - PFR28_00775 0.42 -4.4
830,387 + PFR28_00775 0.43 -4.3
830,388 - PFR28_00775 0.43 -5.0
830,486 + PFR28_00775 0.50 -3.4
830,486 + PFR28_00775 0.50 -1.7
830,486 + PFR28_00775 0.50 -0.9
830,486 + PFR28_00775 0.50 -4.0
830,487 - PFR28_00775 0.50 -1.9
830,487 - PFR28_00775 0.50 -2.3
830,487 - PFR28_00775 0.50 -2.9
830,487 - PFR28_00775 0.50 -4.4
830,487 - PFR28_00775 0.50 -2.3
830,487 - PFR28_00775 0.50 -2.6
830,487 - PFR28_00775 0.50 -1.9
830,498 + PFR28_00775 0.51 -1.5
830,498 + PFR28_00775 0.51 -2.5
830,498 + PFR28_00775 0.51 -3.0
830,498 + PFR28_00775 0.51 -3.5
830,499 - PFR28_00775 0.51 -3.5
830,499 - PFR28_00775 0.51 -3.1
830,499 - PFR28_00775 0.51 -2.3
830,499 - PFR28_00775 0.51 -2.2
830,499 - PFR28_00775 0.51 -3.9
830,499 - PFR28_00775 0.51 -1.5
830,499 - PFR28_00775 0.51 -3.5
830,499 - PFR28_00775 0.51 +1.1
830,499 - PFR28_00775 0.51 -3.2
830,540 + PFR28_00775 0.54 -4.1
830,541 - PFR28_00775 0.54 -4.2
830,541 - PFR28_00775 0.54 -2.2
830,541 - PFR28_00775 0.54 -3.2
830,541 - PFR28_00775 0.54 -4.3
830,541 - PFR28_00775 0.54 -2.8
830,552 - PFR28_00775 0.55 -2.3
830,690 + PFR28_00775 0.65 -0.5
830,690 + PFR28_00775 0.65 -4.4
830,691 - PFR28_00775 0.65 -1.9
830,691 - PFR28_00775 0.65 -1.7
830,691 - PFR28_00775 0.65 -2.4
830,691 - PFR28_00775 0.65 -1.7
830,691 - PFR28_00775 0.65 -3.8
830,691 - PFR28_00775 0.65 -2.2
830,691 - PFR28_00775 0.65 -1.5
830,804 + PFR28_00775 0.73 -2.2
830,804 + PFR28_00775 0.73 -2.9
830,804 + PFR28_00775 0.73 -2.6
830,804 + PFR28_00775 0.73 -2.2
830,804 + PFR28_00775 0.73 -3.5
830,805 - PFR28_00775 0.73 -1.8
830,805 - PFR28_00775 0.73 -3.5
830,805 - PFR28_00775 0.73 -3.3
830,849 + PFR28_00775 0.76 -1.3
830,849 + PFR28_00775 0.76 -1.6
830,849 + PFR28_00775 0.76 -0.9
830,850 - PFR28_00775 0.76 -2.3
830,850 - PFR28_00775 0.76 -0.2
830,879 + PFR28_00775 0.78 -3.4
830,879 + PFR28_00775 0.78 -1.5
830,879 + PFR28_00775 0.78 -4.1
830,880 - PFR28_00775 0.79 -4.3
830,981 + PFR28_00775 0.86 -2.0
830,981 + PFR28_00775 0.86 -4.1
830,981 + PFR28_00775 0.86 -1.5
831,047 + -1.9
831,047 + -2.0
831,048 - -2.0
831,147 - -2.4
831,147 - -3.9
831,147 - -2.5
831,147 - -0.7
831,147 - -2.0
831,163 + -2.7
831,163 + -3.4
831,164 - -2.2
831,198 - -1.4
831,206 + -3.0
831,207 - +0.4
831,319 + -3.4
831,330 - +1.0
831,330 - +0.5
831,330 - +1.5
831,364 + -2.7
831,446 + -2.0
831,446 + -3.7
831,446 + -2.9
831,446 + -4.1
831,447 - -0.0
831,447 - -0.2
831,488 + PFR28_00776 0.10 -3.5
831,489 - PFR28_00776 0.10 +0.1
831,534 + PFR28_00776 0.13 -4.1
831,710 + PFR28_00776 0.24 -1.5
831,710 + PFR28_00776 0.24 -3.6
831,711 - PFR28_00776 0.24 -3.6
831,711 - PFR28_00776 0.24 -1.2
831,711 - PFR28_00776 0.24 -1.9
831,929 + PFR28_00776 0.38 -1.8
831,929 + PFR28_00776 0.38 -3.1
832,028 + PFR28_00776 0.45 -2.5
832,028 + PFR28_00776 0.45 -3.0
832,028 + PFR28_00776 0.45 -2.9
832,028 + PFR28_00776 0.45 -3.1
832,028 + PFR28_00776 0.45 -2.3
832,029 - PFR28_00776 0.45 -2.9
832,029 - PFR28_00776 0.45 -3.0
832,029 - PFR28_00776 0.45 -3.6
832,029 - PFR28_00776 0.45 -4.0
832,029 - PFR28_00776 0.45 -2.0
832,029 - PFR28_00776 0.45 -1.5
832,029 - PFR28_00776 0.45 -1.5
832,046 + PFR28_00776 0.46 -2.5
832,046 + PFR28_00776 0.46 -3.2
832,046 + PFR28_00776 0.46 -4.1
832,046 + PFR28_00776 0.46 -2.2
832,047 - PFR28_00776 0.46 -3.1
832,047 - PFR28_00776 0.46 -2.8
832,159 - PFR28_00776 0.53 -2.9
832,159 - PFR28_00776 0.53 -3.7
832,159 - PFR28_00776 0.53 -2.1
832,159 - PFR28_00776 0.53 -2.3
832,159 - PFR28_00776 0.53 -2.9
832,173 - PFR28_00776 0.54 -2.0
832,394 + PFR28_00776 0.68 -4.6
832,395 - PFR28_00776 0.68 -3.0
832,395 - PFR28_00776 0.68 -4.0
832,395 - PFR28_00776 0.68 -3.1
832,433 + PFR28_00776 0.71 -4.0
832,762 - -2.7
832,762 - -1.9
832,841 + -2.8
832,857 + -3.6
832,866 + -2.5
832,866 + -4.3
832,867 - -4.7
832,867 - -3.0
832,867 - -1.5
832,878 + -1.5
832,878 + -2.7
832,878 + -3.0
832,879 - -2.9
832,879 - -3.0
832,940 + -4.3
832,973 - +0.4
832,996 + PFR28_00777 0.13 -2.1
833,014 + PFR28_00777 0.18 -0.7
833,014 + PFR28_00777 0.18 -3.5
833,014 + PFR28_00777 0.18 -4.1
833,014 + PFR28_00777 0.18 -3.8
833,014 + PFR28_00777 0.18 -1.2
833,015 - PFR28_00777 0.18 +1.5
833,015 - PFR28_00777 0.18 +1.2
833,015 - PFR28_00777 0.18 +1.7
833,015 - PFR28_00777 0.18 +0.0
833,015 - PFR28_00777 0.18 +1.0
833,109 + PFR28_00777 0.40 -4.7
833,109 + PFR28_00777 0.40 -3.4
833,110 - PFR28_00777 0.40 +0.0
833,214 - PFR28_00777 0.65 +0.3
833,288 + PFR28_00777 0.82 -3.8
833,288 + PFR28_00777 0.82 -2.5
833,288 + PFR28_00777 0.82 -3.3
833,288 + PFR28_00777 0.82 -4.4
833,289 - PFR28_00777 0.82 +0.1
833,289 - PFR28_00777 0.82 +0.4
833,289 - PFR28_00777 0.82 -0.4
833,289 - PFR28_00777 0.82 -0.3
833,412 + -1.0
833,412 + -3.0
833,412 + -3.7
833,413 - -3.6
833,413 - -4.8
833,564 - PFR28_00778 0.20 -3.8
833,616 + PFR28_00778 0.26 -3.4
833,616 + PFR28_00778 0.26 -3.6
833,616 + PFR28_00778 0.26 -2.8
833,743 + PFR28_00778 0.39 -4.5
833,745 + PFR28_00778 0.39 -3.3
833,746 - PFR28_00778 0.39 -3.4
833,771 + PFR28_00778 0.42 -3.4
833,772 - PFR28_00778 0.42 -2.2
833,772 - PFR28_00778 0.42 -0.5
833,881 + PFR28_00778 0.54 -4.1

Or see this region's nucleotide sequence