Strain Fitness in Pseudomonas sp. RS175 around PFR28_01178

Experiment: 4-Guanidinobutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01176 and PFR28_01177 overlap by 4 nucleotidesPFR28_01177 and PFR28_01178 are separated by 96 nucleotidesPFR28_01178 and PFR28_01179 overlap by 4 nucleotidesPFR28_01179 and PFR28_01180 overlap by 4 nucleotides PFR28_01176: PFR28_01176 - hypothetical protein, at 1,289,883 to 1,290,347 _01176 PFR28_01177: PFR28_01177 - hypothetical protein, at 1,290,344 to 1,290,820 _01177 PFR28_01178: PFR28_01178 - hypothetical protein, at 1,290,917 to 1,291,360 _01178 PFR28_01179: PFR28_01179 - hypothetical protein, at 1,291,357 to 1,291,563 _01179 PFR28_01180: PFR28_01180 - hypothetical protein, at 1,291,560 to 1,292,402 _01180 Position (kb) 1290 1291 1292Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1289.956 kb on - strand, within PFR28_01176at 1290.068 kb on + strand, within PFR28_01176at 1290.072 kb on - strand, within PFR28_01176at 1290.187 kb on + strand, within PFR28_01176at 1290.188 kb on - strand, within PFR28_01176at 1290.389 kb on + strandat 1290.451 kb on + strand, within PFR28_01177at 1290.671 kb on + strand, within PFR28_01177at 1290.671 kb on + strand, within PFR28_01177at 1290.671 kb on + strand, within PFR28_01177at 1290.672 kb on - strand, within PFR28_01177at 1290.672 kb on - strand, within PFR28_01177at 1290.853 kb on + strandat 1290.853 kb on + strandat 1290.853 kb on + strandat 1290.854 kb on - strandat 1290.854 kb on - strandat 1290.854 kb on - strandat 1290.854 kb on - strandat 1291.335 kb on + strandat 1291.350 kb on - strandat 1291.354 kb on + strandat 1291.354 kb on + strandat 1291.354 kb on + strandat 1291.354 kb on + strandat 1291.354 kb on + strandat 1291.354 kb on + strandat 1291.354 kb on + strandat 1291.355 kb on - strandat 1291.355 kb on - strandat 1291.429 kb on + strand, within PFR28_01179at 1291.449 kb on + strand, within PFR28_01179at 1291.449 kb on + strand, within PFR28_01179at 1291.450 kb on - strand, within PFR28_01179at 1291.450 kb on - strand, within PFR28_01179at 1291.450 kb on - strand, within PFR28_01179at 1291.450 kb on - strand, within PFR28_01179at 1291.451 kb on + strand, within PFR28_01179at 1291.451 kb on + strand, within PFR28_01179at 1291.451 kb on + strand, within PFR28_01179at 1291.451 kb on + strand, within PFR28_01179at 1291.452 kb on - strand, within PFR28_01179at 1291.452 kb on - strand, within PFR28_01179at 1291.494 kb on + strand, within PFR28_01179at 1291.495 kb on - strand, within PFR28_01179at 1291.607 kb on - strandat 1291.607 kb on - strandat 1291.660 kb on + strand, within PFR28_01180at 1291.660 kb on + strand, within PFR28_01180at 1291.660 kb on + strand, within PFR28_01180at 1291.661 kb on - strand, within PFR28_01180at 1291.686 kb on - strand, within PFR28_01180at 1291.927 kb on + strand, within PFR28_01180at 1291.927 kb on + strand, within PFR28_01180at 1292.041 kb on + strand, within PFR28_01180at 1292.042 kb on - strand, within PFR28_01180at 1292.042 kb on - strand, within PFR28_01180at 1292.272 kb on + strand, within PFR28_01180at 1292.273 kb on - strand, within PFR28_01180

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Guanidinobutyric (C)
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1,289,956 - PFR28_01176 0.16 -0.0
1,290,068 + PFR28_01176 0.40 +3.4
1,290,072 - PFR28_01176 0.41 +1.1
1,290,187 + PFR28_01176 0.65 +1.8
1,290,188 - PFR28_01176 0.66 +1.2
1,290,389 + +1.7
1,290,451 + PFR28_01177 0.22 +0.6
1,290,671 + PFR28_01177 0.69 +1.4
1,290,671 + PFR28_01177 0.69 +0.8
1,290,671 + PFR28_01177 0.69 +1.3
1,290,672 - PFR28_01177 0.69 -1.4
1,290,672 - PFR28_01177 0.69 +0.8
1,290,853 + +0.6
1,290,853 + +1.2
1,290,853 + +1.7
1,290,854 - -1.3
1,290,854 - -0.4
1,290,854 - +0.4
1,290,854 - +1.6
1,291,335 + +1.5
1,291,350 - +0.9
1,291,354 + +1.5
1,291,354 + +0.5
1,291,354 + +1.7
1,291,354 + +1.0
1,291,354 + -1.9
1,291,354 + +1.5
1,291,354 + -0.3
1,291,355 - +0.4
1,291,355 - +1.5
1,291,429 + PFR28_01179 0.35 -2.2
1,291,449 + PFR28_01179 0.44 +1.0
1,291,449 + PFR28_01179 0.44 +0.8
1,291,450 - PFR28_01179 0.45 +0.8
1,291,450 - PFR28_01179 0.45 -0.9
1,291,450 - PFR28_01179 0.45 +0.4
1,291,450 - PFR28_01179 0.45 +0.5
1,291,451 + PFR28_01179 0.45 +1.6
1,291,451 + PFR28_01179 0.45 +0.7
1,291,451 + PFR28_01179 0.45 -1.8
1,291,451 + PFR28_01179 0.45 -0.4
1,291,452 - PFR28_01179 0.46 +2.3
1,291,452 - PFR28_01179 0.46 +1.2
1,291,494 + PFR28_01179 0.66 +0.9
1,291,495 - PFR28_01179 0.67 -2.4
1,291,607 - +1.0
1,291,607 - +0.0
1,291,660 + PFR28_01180 0.12 -1.0
1,291,660 + PFR28_01180 0.12 +0.8
1,291,660 + PFR28_01180 0.12 +1.1
1,291,661 - PFR28_01180 0.12 +1.0
1,291,686 - PFR28_01180 0.15 -0.5
1,291,927 + PFR28_01180 0.44 +0.1
1,291,927 + PFR28_01180 0.44 +2.6
1,292,041 + PFR28_01180 0.57 +0.3
1,292,042 - PFR28_01180 0.57 -0.0
1,292,042 - PFR28_01180 0.57 -0.5
1,292,272 + PFR28_01180 0.84 -0.5
1,292,273 - PFR28_01180 0.85 -3.5

Or see this region's nucleotide sequence