Strain Fitness in Pseudomonas sp. RS175 around PFR28_00346

Experiment: 4-Guanidinobutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00344 and PFR28_00345 overlap by 11 nucleotidesPFR28_00345 and PFR28_00346 are separated by 1 nucleotidesPFR28_00346 and PFR28_00347 are separated by 133 nucleotides PFR28_00344: PFR28_00344 - Inner membrane ABC transporter permease protein YdcV, at 376,210 to 377,028 _00344 PFR28_00345: PFR28_00345 - Inner membrane ABC transporter permease protein YdcU, at 377,018 to 377,965 _00345 PFR28_00346: PFR28_00346 - Spermidine/putrescine import ATP-binding protein PotA, at 377,967 to 379,004 _00346 PFR28_00347: PFR28_00347 - Bifunctional polyhydroxybutyrate synthase / ABC transporter periplasmic binding protein, at 379,138 to 380,289 _00347 Position (kb) 377 378 379 380Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 377.054 kb on - strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.062 kb on - strandat 377.062 kb on - strandat 377.062 kb on - strandat 377.062 kb on - strandat 377.062 kb on - strandat 377.062 kb on - strandat 377.062 kb on - strandat 377.062 kb on - strandat 377.139 kb on + strand, within PFR28_00345at 377.140 kb on - strand, within PFR28_00345at 377.140 kb on - strand, within PFR28_00345at 377.140 kb on - strand, within PFR28_00345at 377.383 kb on - strand, within PFR28_00345at 377.383 kb on - strand, within PFR28_00345at 377.425 kb on + strand, within PFR28_00345at 377.426 kb on - strand, within PFR28_00345at 377.426 kb on - strand, within PFR28_00345at 377.426 kb on - strand, within PFR28_00345at 377.538 kb on + strand, within PFR28_00345at 377.538 kb on + strand, within PFR28_00345at 377.538 kb on + strand, within PFR28_00345at 377.539 kb on - strand, within PFR28_00345at 377.539 kb on - strand, within PFR28_00345at 377.539 kb on - strand, within PFR28_00345at 377.539 kb on - strand, within PFR28_00345at 377.551 kb on + strand, within PFR28_00345at 377.551 kb on + strand, within PFR28_00345at 377.552 kb on - strand, within PFR28_00345at 377.553 kb on + strand, within PFR28_00345at 377.553 kb on + strand, within PFR28_00345at 377.553 kb on + strand, within PFR28_00345at 377.554 kb on - strand, within PFR28_00345at 377.554 kb on - strand, within PFR28_00345at 377.586 kb on + strand, within PFR28_00345at 377.587 kb on - strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.631 kb on + strand, within PFR28_00345at 377.632 kb on - strand, within PFR28_00345at 377.632 kb on - strand, within PFR28_00345at 377.632 kb on - strand, within PFR28_00345at 377.632 kb on - strand, within PFR28_00345at 377.632 kb on - strand, within PFR28_00345at 377.791 kb on - strand, within PFR28_00345at 377.830 kb on - strand, within PFR28_00345at 377.877 kb on + strandat 377.878 kb on - strandat 377.878 kb on - strandat 377.878 kb on - strandat 377.878 kb on - strandat 378.127 kb on + strand, within PFR28_00346at 378.149 kb on - strand, within PFR28_00346at 378.337 kb on + strand, within PFR28_00346at 378.338 kb on - strand, within PFR28_00346at 378.338 kb on - strand, within PFR28_00346at 378.338 kb on - strand, within PFR28_00346at 378.710 kb on - strand, within PFR28_00346at 378.710 kb on - strand, within PFR28_00346at 378.734 kb on + strand, within PFR28_00346at 378.734 kb on + strand, within PFR28_00346at 378.734 kb on + strand, within PFR28_00346at 378.734 kb on + strand, within PFR28_00346at 378.752 kb on - strand, within PFR28_00346at 378.976 kb on - strandat 378.976 kb on - strandat 379.033 kb on + strandat 379.033 kb on + strandat 379.033 kb on + strandat 379.033 kb on + strandat 379.033 kb on + strandat 379.034 kb on - strandat 379.034 kb on - strandat 379.139 kb on + strandat 379.140 kb on - strandat 379.163 kb on + strandat 379.163 kb on + strandat 379.163 kb on + strandat 379.163 kb on + strandat 379.163 kb on + strandat 379.163 kb on + strandat 379.163 kb on + strandat 379.163 kb on + strandat 379.164 kb on - strandat 379.164 kb on - strandat 379.164 kb on - strandat 379.164 kb on - strandat 379.164 kb on - strandat 379.164 kb on - strandat 379.184 kb on + strandat 379.184 kb on + strandat 379.185 kb on - strandat 379.185 kb on - strandat 379.185 kb on - strandat 379.193 kb on + strandat 379.193 kb on + strandat 379.193 kb on + strandat 379.194 kb on - strandat 379.194 kb on - strandat 379.385 kb on + strand, within PFR28_00347at 379.385 kb on + strand, within PFR28_00347at 379.385 kb on + strand, within PFR28_00347at 379.386 kb on - strand, within PFR28_00347at 379.386 kb on - strand, within PFR28_00347at 379.386 kb on - strand, within PFR28_00347at 379.386 kb on - strand, within PFR28_00347at 379.386 kb on - strand, within PFR28_00347at 379.508 kb on + strand, within PFR28_00347at 379.508 kb on + strand, within PFR28_00347at 379.631 kb on + strand, within PFR28_00347at 379.631 kb on + strand, within PFR28_00347at 379.631 kb on + strand, within PFR28_00347at 379.631 kb on + strand, within PFR28_00347at 379.632 kb on - strand, within PFR28_00347at 379.632 kb on - strand, within PFR28_00347at 379.632 kb on - strand, within PFR28_00347at 379.695 kb on - strand, within PFR28_00347at 379.715 kb on + strand, within PFR28_00347at 379.715 kb on + strand, within PFR28_00347at 379.715 kb on + strand, within PFR28_00347at 379.715 kb on + strand, within PFR28_00347at 379.715 kb on + strand, within PFR28_00347at 379.715 kb on + strand, within PFR28_00347at 379.715 kb on + strand, within PFR28_00347at 379.716 kb on - strand, within PFR28_00347at 379.716 kb on - strand, within PFR28_00347at 379.716 kb on - strand, within PFR28_00347at 379.716 kb on - strand, within PFR28_00347at 379.716 kb on - strand, within PFR28_00347at 379.716 kb on - strand, within PFR28_00347at 379.716 kb on - strand, within PFR28_00347at 379.730 kb on + strand, within PFR28_00347at 379.730 kb on + strand, within PFR28_00347at 379.730 kb on + strand, within PFR28_00347at 379.730 kb on + strand, within PFR28_00347at 379.730 kb on + strand, within PFR28_00347at 379.731 kb on - strand, within PFR28_00347at 379.731 kb on - strand, within PFR28_00347at 379.731 kb on - strand, within PFR28_00347at 379.731 kb on - strand, within PFR28_00347at 379.731 kb on - strand, within PFR28_00347at 379.731 kb on - strand, within PFR28_00347at 379.731 kb on - strand, within PFR28_00347at 379.738 kb on + strand, within PFR28_00347at 379.739 kb on - strand, within PFR28_00347at 379.739 kb on - strand, within PFR28_00347at 379.832 kb on + strand, within PFR28_00347at 379.832 kb on + strand, within PFR28_00347at 379.832 kb on + strand, within PFR28_00347at 379.832 kb on + strand, within PFR28_00347at 379.833 kb on - strand, within PFR28_00347at 379.833 kb on - strand, within PFR28_00347at 379.833 kb on - strand, within PFR28_00347at 379.833 kb on - strand, within PFR28_00347at 379.871 kb on + strand, within PFR28_00347at 379.871 kb on + strand, within PFR28_00347at 379.871 kb on + strand, within PFR28_00347at 379.872 kb on - strand, within PFR28_00347at 379.892 kb on + strand, within PFR28_00347at 379.893 kb on - strand, within PFR28_00347at 379.893 kb on - strand, within PFR28_00347at 379.893 kb on - strand, within PFR28_00347

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Guanidinobutyric (C)
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377,054 - -2.2
377,061 + -1.9
377,061 + -1.3
377,061 + -0.5
377,061 + +0.8
377,061 + +0.6
377,061 + +0.2
377,061 + +0.9
377,061 + -1.1
377,061 + +0.1
377,061 + -0.9
377,061 + +1.2
377,061 + +0.4
377,061 + +0.5
377,061 + -0.6
377,061 + -1.7
377,062 - +0.8
377,062 - +0.4
377,062 - +0.1
377,062 - +0.9
377,062 - +0.9
377,062 - -1.7
377,062 - -0.3
377,062 - +1.2
377,139 + PFR28_00345 0.13 +0.8
377,140 - PFR28_00345 0.13 +1.3
377,140 - PFR28_00345 0.13 -2.1
377,140 - PFR28_00345 0.13 -0.1
377,383 - PFR28_00345 0.39 +1.7
377,383 - PFR28_00345 0.39 +1.4
377,425 + PFR28_00345 0.43 -0.5
377,426 - PFR28_00345 0.43 -0.1
377,426 - PFR28_00345 0.43 +1.2
377,426 - PFR28_00345 0.43 -0.3
377,538 + PFR28_00345 0.55 -1.7
377,538 + PFR28_00345 0.55 -1.5
377,538 + PFR28_00345 0.55 -1.1
377,539 - PFR28_00345 0.55 -0.5
377,539 - PFR28_00345 0.55 -1.1
377,539 - PFR28_00345 0.55 +0.2
377,539 - PFR28_00345 0.55 -1.7
377,551 + PFR28_00345 0.56 -0.2
377,551 + PFR28_00345 0.56 +0.6
377,552 - PFR28_00345 0.56 +0.2
377,553 + PFR28_00345 0.56 +1.0
377,553 + PFR28_00345 0.56 -1.3
377,553 + PFR28_00345 0.56 -3.9
377,554 - PFR28_00345 0.57 -0.3
377,554 - PFR28_00345 0.57 -0.3
377,586 + PFR28_00345 0.60 -0.5
377,587 - PFR28_00345 0.60 -0.0
377,628 + PFR28_00345 0.64 +0.0
377,628 + PFR28_00345 0.64 +1.1
377,628 + PFR28_00345 0.64 -1.5
377,628 + PFR28_00345 0.64 +1.8
377,628 + PFR28_00345 0.64 -0.0
377,628 + PFR28_00345 0.64 +0.8
377,628 + PFR28_00345 0.64 +0.2
377,628 + PFR28_00345 0.64 -1.6
377,628 + PFR28_00345 0.64 +1.3
377,628 + PFR28_00345 0.64 +0.4
377,628 + PFR28_00345 0.64 +1.8
377,628 + PFR28_00345 0.64 -1.4
377,628 + PFR28_00345 0.64 -0.9
377,628 + PFR28_00345 0.64 -1.7
377,628 + PFR28_00345 0.64 +2.8
377,628 + PFR28_00345 0.64 -0.8
377,629 - PFR28_00345 0.64 -0.9
377,629 - PFR28_00345 0.64 +1.8
377,629 - PFR28_00345 0.64 -0.9
377,629 - PFR28_00345 0.64 +0.2
377,629 - PFR28_00345 0.64 +1.8
377,629 - PFR28_00345 0.64 +2.2
377,629 - PFR28_00345 0.64 -0.3
377,629 - PFR28_00345 0.64 -1.2
377,629 - PFR28_00345 0.64 +0.3
377,631 + PFR28_00345 0.65 +2.0
377,632 - PFR28_00345 0.65 +0.1
377,632 - PFR28_00345 0.65 -0.2
377,632 - PFR28_00345 0.65 -0.1
377,632 - PFR28_00345 0.65 -0.6
377,632 - PFR28_00345 0.65 -0.9
377,791 - PFR28_00345 0.82 -0.5
377,830 - PFR28_00345 0.86 -0.9
377,877 + -0.8
377,878 - -2.4
377,878 - +1.3
377,878 - +0.1
377,878 - -1.4
378,127 + PFR28_00346 0.15 +0.4
378,149 - PFR28_00346 0.18 -2.3
378,337 + PFR28_00346 0.36 +0.7
378,338 - PFR28_00346 0.36 +0.2
378,338 - PFR28_00346 0.36 -0.9
378,338 - PFR28_00346 0.36 +1.2
378,710 - PFR28_00346 0.72 +1.7
378,710 - PFR28_00346 0.72 +0.1
378,734 + PFR28_00346 0.74 +2.7
378,734 + PFR28_00346 0.74 +1.1
378,734 + PFR28_00346 0.74 -0.1
378,734 + PFR28_00346 0.74 -1.7
378,752 - PFR28_00346 0.76 +0.3
378,976 - +1.0
378,976 - -0.0
379,033 + +1.1
379,033 + -2.0
379,033 + +0.1
379,033 + -0.9
379,033 + -0.7
379,034 - -2.5
379,034 - +1.5
379,139 + +1.4
379,140 - -1.1
379,163 + +0.7
379,163 + -3.1
379,163 + -0.3
379,163 + +0.6
379,163 + -3.0
379,163 + -1.1
379,163 + -0.7
379,163 + -0.6
379,164 - +1.3
379,164 - -0.5
379,164 - -0.0
379,164 - -1.6
379,164 - +0.2
379,164 - +1.1
379,184 + +1.2
379,184 + -0.7
379,185 - +1.4
379,185 - +0.6
379,185 - -1.1
379,193 + +0.8
379,193 + +0.7
379,193 + +0.7
379,194 - -1.4
379,194 - -0.2
379,385 + PFR28_00347 0.21 -0.5
379,385 + PFR28_00347 0.21 -2.9
379,385 + PFR28_00347 0.21 +0.6
379,386 - PFR28_00347 0.22 -1.1
379,386 - PFR28_00347 0.22 +0.1
379,386 - PFR28_00347 0.22 -3.3
379,386 - PFR28_00347 0.22 +0.1
379,386 - PFR28_00347 0.22 -2.9
379,508 + PFR28_00347 0.32 -0.3
379,508 + PFR28_00347 0.32 +1.0
379,631 + PFR28_00347 0.43 -0.2
379,631 + PFR28_00347 0.43 +0.6
379,631 + PFR28_00347 0.43 +0.4
379,631 + PFR28_00347 0.43 -0.9
379,632 - PFR28_00347 0.43 -0.6
379,632 - PFR28_00347 0.43 +0.1
379,632 - PFR28_00347 0.43 -1.9
379,695 - PFR28_00347 0.48 +0.7
379,715 + PFR28_00347 0.50 -0.1
379,715 + PFR28_00347 0.50 -0.7
379,715 + PFR28_00347 0.50 -0.8
379,715 + PFR28_00347 0.50 -0.9
379,715 + PFR28_00347 0.50 +0.6
379,715 + PFR28_00347 0.50 +1.7
379,715 + PFR28_00347 0.50 -1.9
379,716 - PFR28_00347 0.50 -1.4
379,716 - PFR28_00347 0.50 +0.9
379,716 - PFR28_00347 0.50 -2.6
379,716 - PFR28_00347 0.50 +0.3
379,716 - PFR28_00347 0.50 -1.7
379,716 - PFR28_00347 0.50 -2.2
379,716 - PFR28_00347 0.50 -0.6
379,730 + PFR28_00347 0.51 +0.1
379,730 + PFR28_00347 0.51 +0.9
379,730 + PFR28_00347 0.51 +0.7
379,730 + PFR28_00347 0.51 +0.8
379,730 + PFR28_00347 0.51 -1.9
379,731 - PFR28_00347 0.51 -0.3
379,731 - PFR28_00347 0.51 -0.4
379,731 - PFR28_00347 0.51 +0.4
379,731 - PFR28_00347 0.51 -0.7
379,731 - PFR28_00347 0.51 -1.6
379,731 - PFR28_00347 0.51 -0.9
379,731 - PFR28_00347 0.51 -2.0
379,738 + PFR28_00347 0.52 +0.4
379,739 - PFR28_00347 0.52 -0.1
379,739 - PFR28_00347 0.52 -0.6
379,832 + PFR28_00347 0.60 +0.0
379,832 + PFR28_00347 0.60 +1.5
379,832 + PFR28_00347 0.60 -1.3
379,832 + PFR28_00347 0.60 +0.5
379,833 - PFR28_00347 0.60 -2.0
379,833 - PFR28_00347 0.60 +0.2
379,833 - PFR28_00347 0.60 -2.9
379,833 - PFR28_00347 0.60 -1.4
379,871 + PFR28_00347 0.64 +0.7
379,871 + PFR28_00347 0.64 +0.4
379,871 + PFR28_00347 0.64 -0.3
379,872 - PFR28_00347 0.64 -1.7
379,892 + PFR28_00347 0.65 +0.3
379,893 - PFR28_00347 0.66 +2.3
379,893 - PFR28_00347 0.66 +1.3
379,893 - PFR28_00347 0.66 -1.1

Or see this region's nucleotide sequence