Experiment: R2A with 3-octanone 2.65516666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21955 and ABIE41_RS21960 are separated by 277 nucleotides ABIE41_RS21960 and ABIE41_RS21965 are separated by 25 nucleotides ABIE41_RS21965 and ABIE41_RS21970 overlap by 1 nucleotides
ABIE41_RS21955: ABIE41_RS21955 - 3-oxo-tetronate kinase, at 4,513,157 to 4,514,422
_RS21955
ABIE41_RS21960: ABIE41_RS21960 - ABC transporter substrate-binding protein, at 4,514,700 to 4,516,205
_RS21960
ABIE41_RS21965: ABIE41_RS21965 - ABC transporter permease, at 4,516,231 to 4,517,175
_RS21965
ABIE41_RS21970: ABIE41_RS21970 - ABC transporter permease, at 4,517,175 to 4,518,059
_RS21970
Position (kb) 4514
4515
4516
4517 Strain fitness (log2 ratio) -1
0
1
2 at 4513.839 kb on + strand, within ABIE41_RS21955 at 4513.840 kb on - strand, within ABIE41_RS21955 at 4513.911 kb on + strand, within ABIE41_RS21955 at 4514.041 kb on - strand, within ABIE41_RS21955 at 4514.049 kb on + strand, within ABIE41_RS21955 at 4514.049 kb on + strand, within ABIE41_RS21955 at 4514.049 kb on + strand, within ABIE41_RS21955 at 4514.050 kb on - strand, within ABIE41_RS21955 at 4514.051 kb on - strand, within ABIE41_RS21955 at 4514.175 kb on + strand, within ABIE41_RS21955 at 4514.175 kb on + strand, within ABIE41_RS21955 at 4514.176 kb on - strand, within ABIE41_RS21955 at 4514.176 kb on - strand, within ABIE41_RS21955 at 4514.470 kb on + strand at 4514.471 kb on - strand at 4514.643 kb on + strand at 4514.644 kb on - strand at 4514.644 kb on - strand at 4514.900 kb on + strand, within ABIE41_RS21960 at 4514.900 kb on + strand, within ABIE41_RS21960 at 4514.900 kb on + strand, within ABIE41_RS21960 at 4514.900 kb on + strand, within ABIE41_RS21960 at 4514.900 kb on + strand, within ABIE41_RS21960 at 4514.901 kb on - strand, within ABIE41_RS21960 at 4514.901 kb on - strand, within ABIE41_RS21960 at 4515.243 kb on + strand, within ABIE41_RS21960 at 4515.243 kb on + strand, within ABIE41_RS21960 at 4515.243 kb on + strand, within ABIE41_RS21960 at 4515.244 kb on - strand, within ABIE41_RS21960 at 4515.318 kb on + strand, within ABIE41_RS21960 at 4515.318 kb on + strand, within ABIE41_RS21960 at 4515.319 kb on - strand, within ABIE41_RS21960 at 4515.319 kb on - strand, within ABIE41_RS21960 at 4515.319 kb on - strand, within ABIE41_RS21960 at 4515.340 kb on - strand, within ABIE41_RS21960 at 4515.618 kb on + strand, within ABIE41_RS21960 at 4515.618 kb on + strand, within ABIE41_RS21960 at 4515.619 kb on - strand, within ABIE41_RS21960 at 4515.619 kb on - strand, within ABIE41_RS21960 at 4515.619 kb on - strand, within ABIE41_RS21960 at 4515.657 kb on + strand, within ABIE41_RS21960 at 4515.657 kb on + strand, within ABIE41_RS21960 at 4515.658 kb on - strand, within ABIE41_RS21960 at 4515.658 kb on - strand, within ABIE41_RS21960 at 4515.658 kb on - strand, within ABIE41_RS21960 at 4515.658 kb on - strand, within ABIE41_RS21960 at 4515.982 kb on - strand, within ABIE41_RS21960 at 4515.982 kb on - strand, within ABIE41_RS21960 at 4516.029 kb on + strand, within ABIE41_RS21960 at 4516.029 kb on + strand, within ABIE41_RS21960 at 4516.029 kb on + strand, within ABIE41_RS21960 at 4516.101 kb on + strand at 4516.102 kb on - strand at 4516.102 kb on - strand at 4516.102 kb on - strand at 4516.102 kb on - strand at 4516.102 kb on - strand at 4516.108 kb on - strand at 4516.393 kb on + strand, within ABIE41_RS21965 at 4516.393 kb on + strand, within ABIE41_RS21965 at 4516.394 kb on - strand, within ABIE41_RS21965 at 4516.619 kb on - strand, within ABIE41_RS21965 at 4516.864 kb on + strand, within ABIE41_RS21965 at 4516.864 kb on + strand, within ABIE41_RS21965 at 4516.864 kb on + strand, within ABIE41_RS21965 at 4516.864 kb on + strand, within ABIE41_RS21965 at 4516.865 kb on - strand, within ABIE41_RS21965 at 4516.865 kb on - strand, within ABIE41_RS21965 at 4516.865 kb on - strand, within ABIE41_RS21965 at 4516.865 kb on - strand, within ABIE41_RS21965 at 4517.065 kb on + strand, within ABIE41_RS21965 at 4517.065 kb on + strand, within ABIE41_RS21965 at 4517.065 kb on + strand, within ABIE41_RS21965 at 4517.065 kb on + strand, within ABIE41_RS21965 at 4517.066 kb on - strand, within ABIE41_RS21965 at 4517.094 kb on + strand at 4517.094 kb on + strand at 4517.094 kb on + strand at 4517.095 kb on - strand at 4517.095 kb on - strand at 4517.095 kb on - strand at 4517.140 kb on + strand at 4517.140 kb on + strand at 4517.140 kb on + strand at 4517.140 kb on + strand at 4517.140 kb on + strand at 4517.141 kb on - strand at 4517.141 kb on - strand at 4517.141 kb on - strand at 4517.141 kb on - strand at 4517.141 kb on - strand at 4517.141 kb on - strand at 4517.141 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM remove 4,513,839 + ABIE41_RS21955 0.54 -0.0 4,513,840 - ABIE41_RS21955 0.54 -0.6 4,513,911 + ABIE41_RS21955 0.60 +0.8 4,514,041 - ABIE41_RS21955 0.70 -0.1 4,514,049 + ABIE41_RS21955 0.70 +0.5 4,514,049 + ABIE41_RS21955 0.70 +0.1 4,514,049 + ABIE41_RS21955 0.70 +1.6 4,514,050 - ABIE41_RS21955 0.71 -0.4 4,514,051 - ABIE41_RS21955 0.71 +1.4 4,514,175 + ABIE41_RS21955 0.80 -0.3 4,514,175 + ABIE41_RS21955 0.80 +0.5 4,514,176 - ABIE41_RS21955 0.80 -1.3 4,514,176 - ABIE41_RS21955 0.80 -0.5 4,514,470 + +1.1 4,514,471 - -0.7 4,514,643 + +0.5 4,514,644 - -1.7 4,514,644 - +0.5 4,514,900 + ABIE41_RS21960 0.13 -0.4 4,514,900 + ABIE41_RS21960 0.13 -0.2 4,514,900 + ABIE41_RS21960 0.13 +0.0 4,514,900 + ABIE41_RS21960 0.13 +1.5 4,514,900 + ABIE41_RS21960 0.13 +0.9 4,514,901 - ABIE41_RS21960 0.13 -1.2 4,514,901 - ABIE41_RS21960 0.13 +0.6 4,515,243 + ABIE41_RS21960 0.36 +0.3 4,515,243 + ABIE41_RS21960 0.36 -0.3 4,515,243 + ABIE41_RS21960 0.36 -1.2 4,515,244 - ABIE41_RS21960 0.36 -0.3 4,515,318 + ABIE41_RS21960 0.41 -0.1 4,515,318 + ABIE41_RS21960 0.41 +0.4 4,515,319 - ABIE41_RS21960 0.41 -1.5 4,515,319 - ABIE41_RS21960 0.41 -0.1 4,515,319 - ABIE41_RS21960 0.41 -0.1 4,515,340 - ABIE41_RS21960 0.42 -0.5 4,515,618 + ABIE41_RS21960 0.61 -0.6 4,515,618 + ABIE41_RS21960 0.61 +0.5 4,515,619 - ABIE41_RS21960 0.61 +0.6 4,515,619 - ABIE41_RS21960 0.61 -0.3 4,515,619 - ABIE41_RS21960 0.61 +0.9 4,515,657 + ABIE41_RS21960 0.64 -0.7 4,515,657 + ABIE41_RS21960 0.64 -0.0 4,515,658 - ABIE41_RS21960 0.64 +1.1 4,515,658 - ABIE41_RS21960 0.64 -0.3 4,515,658 - ABIE41_RS21960 0.64 -0.5 4,515,658 - ABIE41_RS21960 0.64 -1.0 4,515,982 - ABIE41_RS21960 0.85 +0.7 4,515,982 - ABIE41_RS21960 0.85 -0.1 4,516,029 + ABIE41_RS21960 0.88 -0.9 4,516,029 + ABIE41_RS21960 0.88 -1.7 4,516,029 + ABIE41_RS21960 0.88 -0.7 4,516,101 + -1.3 4,516,102 - -0.4 4,516,102 - +0.2 4,516,102 - +0.3 4,516,102 - -0.1 4,516,102 - +1.2 4,516,108 - -0.9 4,516,393 + ABIE41_RS21965 0.17 -0.0 4,516,393 + ABIE41_RS21965 0.17 -0.8 4,516,394 - ABIE41_RS21965 0.17 -1.1 4,516,619 - ABIE41_RS21965 0.41 +1.9 4,516,864 + ABIE41_RS21965 0.67 +0.1 4,516,864 + ABIE41_RS21965 0.67 +0.4 4,516,864 + ABIE41_RS21965 0.67 -0.0 4,516,864 + ABIE41_RS21965 0.67 +0.3 4,516,865 - ABIE41_RS21965 0.67 -0.6 4,516,865 - ABIE41_RS21965 0.67 -1.5 4,516,865 - ABIE41_RS21965 0.67 +1.1 4,516,865 - ABIE41_RS21965 0.67 +1.6 4,517,065 + ABIE41_RS21965 0.88 -1.3 4,517,065 + ABIE41_RS21965 0.88 +0.2 4,517,065 + ABIE41_RS21965 0.88 +1.4 4,517,065 + ABIE41_RS21965 0.88 -0.6 4,517,066 - ABIE41_RS21965 0.88 +0.2 4,517,094 + -0.9 4,517,094 + -0.9 4,517,094 + +0.2 4,517,095 - -0.9 4,517,095 - +0.5 4,517,095 - -0.1 4,517,140 + -0.8 4,517,140 + -0.7 4,517,140 + +0.0 4,517,140 + -0.0 4,517,140 + -0.0 4,517,141 - +0.1 4,517,141 - -0.1 4,517,141 - -1.5 4,517,141 - -0.4 4,517,141 - +1.7 4,517,141 - +0.1 4,517,141 - +0.1
Or see this region's nucleotide sequence