Strain Fitness in Bosea sp. OAE506 around ABIE41_RS13815

Experiment: R2A with 3-octanone 2.65516666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS13805 and ABIE41_RS13810 are separated by 74 nucleotidesABIE41_RS13810 and ABIE41_RS13815 are separated by 36 nucleotidesABIE41_RS13815 and ABIE41_RS13820 overlap by 4 nucleotidesABIE41_RS13820 and ABIE41_RS13825 are separated by 163 nucleotides ABIE41_RS13805: ABIE41_RS13805 - circularly permuted type 2 ATP-grasp protein, at 2,831,519 to 2,832,934 _RS13805 ABIE41_RS13810: ABIE41_RS13810 - hypothetical protein, at 2,833,009 to 2,833,635 _RS13810 ABIE41_RS13815: ABIE41_RS13815 - DNA repair protein RadC, at 2,833,672 to 2,834,412 _RS13815 ABIE41_RS13820: ABIE41_RS13820 - type I methionyl aminopeptidase, at 2,834,409 to 2,835,233 _RS13820 ABIE41_RS13825: ABIE41_RS13825 - FkbM family methyltransferase, at 2,835,397 to 2,836,263 _RS13825 Position (kb) 2833 2834 2835Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2832.774 kb on + strand, within ABIE41_RS13805at 2832.883 kb on - strandat 2832.965 kb on - strandat 2832.965 kb on - strandat 2833.026 kb on + strandat 2833.027 kb on - strandat 2833.027 kb on - strandat 2833.027 kb on - strandat 2833.101 kb on + strand, within ABIE41_RS13810at 2833.227 kb on + strand, within ABIE41_RS13810at 2833.228 kb on - strand, within ABIE41_RS13810at 2833.256 kb on - strand, within ABIE41_RS13810at 2833.256 kb on - strand, within ABIE41_RS13810at 2833.259 kb on - strand, within ABIE41_RS13810at 2833.259 kb on - strand, within ABIE41_RS13810at 2833.403 kb on - strand, within ABIE41_RS13810at 2833.404 kb on + strand, within ABIE41_RS13810at 2833.466 kb on - strand, within ABIE41_RS13810at 2833.471 kb on + strand, within ABIE41_RS13810at 2833.507 kb on + strand, within ABIE41_RS13810at 2833.507 kb on + strand, within ABIE41_RS13810at 2833.519 kb on + strand, within ABIE41_RS13810at 2833.519 kb on + strand, within ABIE41_RS13810at 2833.519 kb on + strand, within ABIE41_RS13810at 2833.519 kb on + strand, within ABIE41_RS13810at 2833.519 kb on + strand, within ABIE41_RS13810at 2833.520 kb on - strand, within ABIE41_RS13810at 2833.520 kb on - strand, within ABIE41_RS13810at 2833.535 kb on - strand, within ABIE41_RS13810at 2833.673 kb on + strandat 2833.673 kb on + strandat 2833.673 kb on + strandat 2833.674 kb on - strandat 2833.899 kb on + strand, within ABIE41_RS13815at 2833.899 kb on + strand, within ABIE41_RS13815at 2833.899 kb on + strand, within ABIE41_RS13815at 2834.013 kb on - strand, within ABIE41_RS13815at 2834.334 kb on - strand, within ABIE41_RS13815at 2834.809 kb on + strand, within ABIE41_RS13820at 2834.809 kb on + strand, within ABIE41_RS13820at 2834.809 kb on + strand, within ABIE41_RS13820at 2834.809 kb on + strand, within ABIE41_RS13820at 2834.809 kb on + strand, within ABIE41_RS13820at 2834.809 kb on + strand, within ABIE41_RS13820at 2834.810 kb on - strand, within ABIE41_RS13820at 2834.810 kb on - strand, within ABIE41_RS13820at 2834.810 kb on - strand, within ABIE41_RS13820at 2834.810 kb on - strand, within ABIE41_RS13820at 2834.810 kb on - strand, within ABIE41_RS13820at 2834.861 kb on - strand, within ABIE41_RS13820at 2834.861 kb on - strand, within ABIE41_RS13820at 2834.861 kb on - strand, within ABIE41_RS13820at 2834.861 kb on - strand, within ABIE41_RS13820at 2834.905 kb on + strand, within ABIE41_RS13820at 2834.905 kb on + strand, within ABIE41_RS13820at 2834.906 kb on - strand, within ABIE41_RS13820at 2834.906 kb on - strand, within ABIE41_RS13820at 2835.056 kb on - strand, within ABIE41_RS13820at 2835.100 kb on + strand, within ABIE41_RS13820at 2835.101 kb on - strand, within ABIE41_RS13820at 2835.101 kb on - strand, within ABIE41_RS13820at 2835.279 kb on - strandat 2835.382 kb on + strandat 2835.382 kb on + strandat 2835.382 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM
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2,832,774 + ABIE41_RS13805 0.89 -0.2
2,832,883 - -0.7
2,832,965 - +0.1
2,832,965 - -0.1
2,833,026 + -2.7
2,833,027 - +0.9
2,833,027 - -1.5
2,833,027 - +0.1
2,833,101 + ABIE41_RS13810 0.15 -0.7
2,833,227 + ABIE41_RS13810 0.35 +0.6
2,833,228 - ABIE41_RS13810 0.35 +0.3
2,833,256 - ABIE41_RS13810 0.39 +0.1
2,833,256 - ABIE41_RS13810 0.39 +0.3
2,833,259 - ABIE41_RS13810 0.40 -0.4
2,833,259 - ABIE41_RS13810 0.40 -0.8
2,833,403 - ABIE41_RS13810 0.63 -0.4
2,833,404 + ABIE41_RS13810 0.63 +0.6
2,833,466 - ABIE41_RS13810 0.73 -1.0
2,833,471 + ABIE41_RS13810 0.74 +0.2
2,833,507 + ABIE41_RS13810 0.79 +0.8
2,833,507 + ABIE41_RS13810 0.79 +0.4
2,833,519 + ABIE41_RS13810 0.81 +0.1
2,833,519 + ABIE41_RS13810 0.81 +1.4
2,833,519 + ABIE41_RS13810 0.81 +0.3
2,833,519 + ABIE41_RS13810 0.81 +0.2
2,833,519 + ABIE41_RS13810 0.81 -0.3
2,833,520 - ABIE41_RS13810 0.81 +0.6
2,833,520 - ABIE41_RS13810 0.81 -0.3
2,833,535 - ABIE41_RS13810 0.84 -1.0
2,833,673 + +0.8
2,833,673 + -1.8
2,833,673 + -0.5
2,833,674 - -2.8
2,833,899 + ABIE41_RS13815 0.31 -0.2
2,833,899 + ABIE41_RS13815 0.31 -0.5
2,833,899 + ABIE41_RS13815 0.31 -0.3
2,834,013 - ABIE41_RS13815 0.46 -0.5
2,834,334 - ABIE41_RS13815 0.89 -0.9
2,834,809 + ABIE41_RS13820 0.48 +0.1
2,834,809 + ABIE41_RS13820 0.48 -0.4
2,834,809 + ABIE41_RS13820 0.48 +0.2
2,834,809 + ABIE41_RS13820 0.48 -1.9
2,834,809 + ABIE41_RS13820 0.48 -1.4
2,834,809 + ABIE41_RS13820 0.48 -0.5
2,834,810 - ABIE41_RS13820 0.49 -0.8
2,834,810 - ABIE41_RS13820 0.49 -0.1
2,834,810 - ABIE41_RS13820 0.49 -1.8
2,834,810 - ABIE41_RS13820 0.49 -0.3
2,834,810 - ABIE41_RS13820 0.49 -0.9
2,834,861 - ABIE41_RS13820 0.55 -0.8
2,834,861 - ABIE41_RS13820 0.55 -0.2
2,834,861 - ABIE41_RS13820 0.55 -1.6
2,834,861 - ABIE41_RS13820 0.55 -1.2
2,834,905 + ABIE41_RS13820 0.60 -1.1
2,834,905 + ABIE41_RS13820 0.60 -0.2
2,834,906 - ABIE41_RS13820 0.60 -1.0
2,834,906 - ABIE41_RS13820 0.60 -1.3
2,835,056 - ABIE41_RS13820 0.78 -0.0
2,835,100 + ABIE41_RS13820 0.84 -0.0
2,835,101 - ABIE41_RS13820 0.84 -0.8
2,835,101 - ABIE41_RS13820 0.84 +0.2
2,835,279 - -0.6
2,835,382 + -1.3
2,835,382 + +0.6
2,835,382 + +2.2

Or see this region's nucleotide sequence