Strain Fitness in Bosea sp. OAE506 around ABIE41_RS09250

Experiment: R2A with 3-octanone 2.65516666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS09245 and ABIE41_RS09250 are separated by 144 nucleotidesABIE41_RS09250 and ABIE41_RS09255 are separated by 230 nucleotides ABIE41_RS09245: ABIE41_RS09245 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 1,917,439 to 1,918,554 _RS09245 ABIE41_RS09250: ABIE41_RS09250 - 30S ribosomal protein S21, at 1,918,699 to 1,918,932 _RS09250 ABIE41_RS09255: ABIE41_RS09255 - tetratricopeptide repeat protein, at 1,919,163 to 1,920,011 _RS09255 Position (kb) 1918 1919Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1917.922 kb on + strand, within ABIE41_RS09245at 1917.976 kb on + strand, within ABIE41_RS09245at 1918.208 kb on - strand, within ABIE41_RS09245at 1918.483 kb on + strandat 1918.484 kb on - strandat 1918.484 kb on - strandat 1918.484 kb on - strandat 1918.664 kb on + strandat 1919.125 kb on - strandat 1919.125 kb on - strandat 1919.299 kb on + strand, within ABIE41_RS09255at 1919.349 kb on + strand, within ABIE41_RS09255at 1919.349 kb on + strand, within ABIE41_RS09255at 1919.350 kb on - strand, within ABIE41_RS09255at 1919.350 kb on - strand, within ABIE41_RS09255at 1919.350 kb on - strand, within ABIE41_RS09255at 1919.370 kb on + strand, within ABIE41_RS09255at 1919.371 kb on - strand, within ABIE41_RS09255at 1919.371 kb on - strand, within ABIE41_RS09255at 1919.454 kb on - strand, within ABIE41_RS09255at 1919.541 kb on + strand, within ABIE41_RS09255at 1919.542 kb on - strand, within ABIE41_RS09255at 1919.542 kb on - strand, within ABIE41_RS09255at 1919.677 kb on - strand, within ABIE41_RS09255at 1919.700 kb on + strand, within ABIE41_RS09255at 1919.700 kb on + strand, within ABIE41_RS09255at 1919.757 kb on + strand, within ABIE41_RS09255at 1919.757 kb on + strand, within ABIE41_RS09255at 1919.757 kb on + strand, within ABIE41_RS09255at 1919.758 kb on - strand, within ABIE41_RS09255at 1919.758 kb on - strand, within ABIE41_RS09255at 1919.758 kb on - strand, within ABIE41_RS09255at 1919.919 kb on + strand, within ABIE41_RS09255at 1919.919 kb on + strand, within ABIE41_RS09255at 1919.919 kb on + strand, within ABIE41_RS09255at 1919.919 kb on + strand, within ABIE41_RS09255at 1919.919 kb on + strand, within ABIE41_RS09255at 1919.920 kb on - strand, within ABIE41_RS09255at 1919.920 kb on - strand, within ABIE41_RS09255at 1919.920 kb on - strand, within ABIE41_RS09255at 1919.920 kb on - strand, within ABIE41_RS09255at 1919.920 kb on - strand, within ABIE41_RS09255

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM
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1,917,922 + ABIE41_RS09245 0.43 -2.3
1,917,976 + ABIE41_RS09245 0.48 +0.5
1,918,208 - ABIE41_RS09245 0.69 -1.8
1,918,483 + +0.2
1,918,484 - -1.0
1,918,484 - +4.1
1,918,484 - -0.2
1,918,664 + -1.2
1,919,125 - -2.4
1,919,125 - -1.0
1,919,299 + ABIE41_RS09255 0.16 -2.0
1,919,349 + ABIE41_RS09255 0.22 -0.6
1,919,349 + ABIE41_RS09255 0.22 +0.2
1,919,350 - ABIE41_RS09255 0.22 -1.2
1,919,350 - ABIE41_RS09255 0.22 -0.9
1,919,350 - ABIE41_RS09255 0.22 +2.8
1,919,370 + ABIE41_RS09255 0.24 -0.3
1,919,371 - ABIE41_RS09255 0.24 -1.0
1,919,371 - ABIE41_RS09255 0.24 -1.4
1,919,454 - ABIE41_RS09255 0.34 -0.6
1,919,541 + ABIE41_RS09255 0.45 -0.5
1,919,542 - ABIE41_RS09255 0.45 -0.8
1,919,542 - ABIE41_RS09255 0.45 -0.9
1,919,677 - ABIE41_RS09255 0.61 -0.9
1,919,700 + ABIE41_RS09255 0.63 -0.6
1,919,700 + ABIE41_RS09255 0.63 -0.2
1,919,757 + ABIE41_RS09255 0.70 +0.4
1,919,757 + ABIE41_RS09255 0.70 -0.4
1,919,757 + ABIE41_RS09255 0.70 +0.3
1,919,758 - ABIE41_RS09255 0.70 -0.5
1,919,758 - ABIE41_RS09255 0.70 -0.3
1,919,758 - ABIE41_RS09255 0.70 -1.4
1,919,919 + ABIE41_RS09255 0.89 -1.6
1,919,919 + ABIE41_RS09255 0.89 -1.0
1,919,919 + ABIE41_RS09255 0.89 +1.4
1,919,919 + ABIE41_RS09255 0.89 +0.2
1,919,919 + ABIE41_RS09255 0.89 -1.2
1,919,920 - ABIE41_RS09255 0.89 -0.4
1,919,920 - ABIE41_RS09255 0.89 -0.1
1,919,920 - ABIE41_RS09255 0.89 +0.2
1,919,920 - ABIE41_RS09255 0.89 -0.8
1,919,920 - ABIE41_RS09255 0.89 +0.3

Or see this region's nucleotide sequence