Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07300

Experiment: R2A with 3-octanone 2.65516666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07295 and ABIE41_RS07300 are separated by 283 nucleotidesABIE41_RS07300 and ABIE41_RS07305 are separated by 214 nucleotides ABIE41_RS07295: ABIE41_RS07295 - pyridoxal phosphate-dependent aminotransferase, at 1,503,915 to 1,505,099 _RS07295 ABIE41_RS07300: ABIE41_RS07300 - IlvD/Edd family dehydratase, at 1,505,383 to 1,507,245 _RS07300 ABIE41_RS07305: ABIE41_RS07305 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 1,507,460 to 1,508,299 _RS07305 Position (kb) 1505 1506 1507 1508Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1504.430 kb on - strand, within ABIE41_RS07295at 1504.462 kb on + strand, within ABIE41_RS07295at 1504.462 kb on + strand, within ABIE41_RS07295at 1504.462 kb on + strand, within ABIE41_RS07295at 1504.462 kb on + strand, within ABIE41_RS07295at 1504.462 kb on + strand, within ABIE41_RS07295at 1504.462 kb on + strand, within ABIE41_RS07295at 1504.463 kb on - strand, within ABIE41_RS07295at 1504.463 kb on - strand, within ABIE41_RS07295at 1504.477 kb on + strand, within ABIE41_RS07295at 1504.477 kb on + strand, within ABIE41_RS07295at 1504.477 kb on + strand, within ABIE41_RS07295at 1504.478 kb on - strand, within ABIE41_RS07295at 1504.696 kb on + strand, within ABIE41_RS07295at 1504.696 kb on + strand, within ABIE41_RS07295at 1504.696 kb on + strand, within ABIE41_RS07295at 1504.696 kb on + strand, within ABIE41_RS07295at 1504.697 kb on - strand, within ABIE41_RS07295at 1504.697 kb on - strand, within ABIE41_RS07295at 1504.697 kb on - strand, within ABIE41_RS07295at 1504.697 kb on - strand, within ABIE41_RS07295at 1504.700 kb on - strand, within ABIE41_RS07295at 1504.714 kb on + strand, within ABIE41_RS07295at 1504.714 kb on + strand, within ABIE41_RS07295at 1504.715 kb on - strand, within ABIE41_RS07295at 1504.738 kb on + strand, within ABIE41_RS07295at 1504.739 kb on - strand, within ABIE41_RS07295at 1504.906 kb on + strand, within ABIE41_RS07295at 1504.906 kb on + strand, within ABIE41_RS07295at 1504.907 kb on - strand, within ABIE41_RS07295at 1504.907 kb on - strand, within ABIE41_RS07295at 1505.249 kb on - strandat 1505.252 kb on + strandat 1505.252 kb on + strandat 1505.256 kb on - strandat 1505.261 kb on + strandat 1505.262 kb on - strandat 1505.530 kb on + strandat 1505.530 kb on + strandat 1505.530 kb on + strandat 1505.530 kb on + strandat 1505.530 kb on + strandat 1505.530 kb on + strandat 1505.530 kb on + strandat 1505.530 kb on + strandat 1505.530 kb on + strandat 1505.530 kb on + strandat 1505.531 kb on - strandat 1505.531 kb on - strandat 1505.531 kb on - strandat 1505.531 kb on - strandat 1505.531 kb on - strandat 1505.531 kb on - strandat 1505.531 kb on - strandat 1505.531 kb on - strandat 1505.531 kb on - strandat 1505.531 kb on - strandat 1505.531 kb on - strandat 1505.531 kb on - strandat 1505.532 kb on + strandat 1505.532 kb on + strandat 1505.532 kb on + strandat 1505.644 kb on - strand, within ABIE41_RS07300at 1505.644 kb on - strand, within ABIE41_RS07300at 1505.644 kb on - strand, within ABIE41_RS07300at 1505.644 kb on - strand, within ABIE41_RS07300at 1505.733 kb on - strand, within ABIE41_RS07300at 1505.770 kb on + strand, within ABIE41_RS07300at 1505.770 kb on + strand, within ABIE41_RS07300at 1505.771 kb on - strand, within ABIE41_RS07300at 1505.771 kb on - strand, within ABIE41_RS07300at 1505.771 kb on - strand, within ABIE41_RS07300at 1505.771 kb on - strand, within ABIE41_RS07300at 1505.795 kb on - strand, within ABIE41_RS07300at 1505.795 kb on - strand, within ABIE41_RS07300at 1505.915 kb on + strand, within ABIE41_RS07300at 1505.915 kb on + strand, within ABIE41_RS07300at 1505.915 kb on + strand, within ABIE41_RS07300at 1505.915 kb on + strand, within ABIE41_RS07300at 1506.002 kb on - strand, within ABIE41_RS07300at 1506.002 kb on - strand, within ABIE41_RS07300at 1506.155 kb on - strand, within ABIE41_RS07300at 1506.166 kb on + strand, within ABIE41_RS07300at 1506.166 kb on + strand, within ABIE41_RS07300at 1506.166 kb on + strand, within ABIE41_RS07300at 1506.167 kb on - strand, within ABIE41_RS07300at 1506.167 kb on - strand, within ABIE41_RS07300at 1506.167 kb on - strand, within ABIE41_RS07300at 1506.167 kb on - strand, within ABIE41_RS07300at 1506.167 kb on - strand, within ABIE41_RS07300at 1506.167 kb on - strand, within ABIE41_RS07300at 1506.321 kb on + strand, within ABIE41_RS07300at 1506.321 kb on + strand, within ABIE41_RS07300at 1506.321 kb on + strand, within ABIE41_RS07300at 1506.322 kb on - strand, within ABIE41_RS07300at 1506.322 kb on - strand, within ABIE41_RS07300at 1506.322 kb on - strand, within ABIE41_RS07300at 1506.322 kb on - strand, within ABIE41_RS07300at 1506.322 kb on - strand, within ABIE41_RS07300at 1506.365 kb on - strand, within ABIE41_RS07300at 1506.378 kb on - strand, within ABIE41_RS07300at 1506.407 kb on - strand, within ABIE41_RS07300at 1506.421 kb on + strand, within ABIE41_RS07300at 1506.421 kb on + strand, within ABIE41_RS07300at 1506.421 kb on + strand, within ABIE41_RS07300at 1506.421 kb on + strand, within ABIE41_RS07300at 1506.421 kb on + strand, within ABIE41_RS07300at 1506.421 kb on + strand, within ABIE41_RS07300at 1506.421 kb on + strand, within ABIE41_RS07300at 1506.421 kb on + strand, within ABIE41_RS07300at 1506.422 kb on - strand, within ABIE41_RS07300at 1506.422 kb on - strand, within ABIE41_RS07300at 1506.422 kb on - strand, within ABIE41_RS07300at 1506.424 kb on + strand, within ABIE41_RS07300at 1506.424 kb on + strand, within ABIE41_RS07300at 1506.424 kb on + strand, within ABIE41_RS07300at 1506.424 kb on + strand, within ABIE41_RS07300at 1506.425 kb on - strand, within ABIE41_RS07300at 1506.564 kb on + strand, within ABIE41_RS07300at 1506.565 kb on + strand, within ABIE41_RS07300at 1506.565 kb on + strand, within ABIE41_RS07300at 1506.565 kb on + strand, within ABIE41_RS07300at 1506.565 kb on + strand, within ABIE41_RS07300at 1506.565 kb on + strand, within ABIE41_RS07300at 1506.565 kb on + strand, within ABIE41_RS07300at 1506.565 kb on + strand, within ABIE41_RS07300at 1506.565 kb on + strand, within ABIE41_RS07300at 1506.566 kb on - strand, within ABIE41_RS07300at 1506.566 kb on - strand, within ABIE41_RS07300at 1506.566 kb on - strand, within ABIE41_RS07300at 1506.566 kb on - strand, within ABIE41_RS07300at 1506.566 kb on - strand, within ABIE41_RS07300at 1506.566 kb on - strand, within ABIE41_RS07300at 1506.742 kb on + strand, within ABIE41_RS07300at 1506.742 kb on + strand, within ABIE41_RS07300at 1506.743 kb on - strand, within ABIE41_RS07300at 1506.823 kb on + strand, within ABIE41_RS07300at 1506.865 kb on + strand, within ABIE41_RS07300at 1506.865 kb on + strand, within ABIE41_RS07300at 1506.865 kb on + strand, within ABIE41_RS07300at 1506.866 kb on - strand, within ABIE41_RS07300at 1506.866 kb on - strand, within ABIE41_RS07300at 1507.102 kb on + strandat 1507.109 kb on - strandat 1507.198 kb on + strandat 1507.662 kb on + strand, within ABIE41_RS07305at 1507.663 kb on - strand, within ABIE41_RS07305at 1507.721 kb on + strand, within ABIE41_RS07305at 1507.721 kb on + strand, within ABIE41_RS07305at 1507.721 kb on + strand, within ABIE41_RS07305at 1507.722 kb on - strand, within ABIE41_RS07305at 1508.006 kb on + strand, within ABIE41_RS07305at 1508.006 kb on + strand, within ABIE41_RS07305at 1508.006 kb on + strand, within ABIE41_RS07305at 1508.006 kb on + strand, within ABIE41_RS07305at 1508.006 kb on + strand, within ABIE41_RS07305at 1508.007 kb on - strand, within ABIE41_RS07305at 1508.007 kb on - strand, within ABIE41_RS07305at 1508.007 kb on - strand, within ABIE41_RS07305at 1508.007 kb on - strand, within ABIE41_RS07305

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM
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1,504,430 - ABIE41_RS07295 0.43 -0.2
1,504,462 + ABIE41_RS07295 0.46 -0.6
1,504,462 + ABIE41_RS07295 0.46 -1.2
1,504,462 + ABIE41_RS07295 0.46 +1.5
1,504,462 + ABIE41_RS07295 0.46 -0.8
1,504,462 + ABIE41_RS07295 0.46 -0.2
1,504,462 + ABIE41_RS07295 0.46 -1.4
1,504,463 - ABIE41_RS07295 0.46 -0.2
1,504,463 - ABIE41_RS07295 0.46 -2.0
1,504,477 + ABIE41_RS07295 0.47 -0.0
1,504,477 + ABIE41_RS07295 0.47 +0.4
1,504,477 + ABIE41_RS07295 0.47 -0.1
1,504,478 - ABIE41_RS07295 0.48 -1.1
1,504,696 + ABIE41_RS07295 0.66 -0.2
1,504,696 + ABIE41_RS07295 0.66 +0.0
1,504,696 + ABIE41_RS07295 0.66 +0.1
1,504,696 + ABIE41_RS07295 0.66 +0.9
1,504,697 - ABIE41_RS07295 0.66 -1.3
1,504,697 - ABIE41_RS07295 0.66 -0.1
1,504,697 - ABIE41_RS07295 0.66 -0.3
1,504,697 - ABIE41_RS07295 0.66 -3.3
1,504,700 - ABIE41_RS07295 0.66 -0.3
1,504,714 + ABIE41_RS07295 0.67 -0.5
1,504,714 + ABIE41_RS07295 0.67 -0.8
1,504,715 - ABIE41_RS07295 0.68 -1.4
1,504,738 + ABIE41_RS07295 0.69 -0.6
1,504,739 - ABIE41_RS07295 0.70 +0.1
1,504,906 + ABIE41_RS07295 0.84 -0.2
1,504,906 + ABIE41_RS07295 0.84 -0.3
1,504,907 - ABIE41_RS07295 0.84 -0.4
1,504,907 - ABIE41_RS07295 0.84 -0.2
1,505,249 - -0.1
1,505,252 + -0.3
1,505,252 + -0.2
1,505,256 - -0.0
1,505,261 + +0.6
1,505,262 - +0.9
1,505,530 + -1.2
1,505,530 + -0.3
1,505,530 + -0.1
1,505,530 + -0.1
1,505,530 + +0.2
1,505,530 + +0.0
1,505,530 + -2.1
1,505,530 + +1.5
1,505,530 + -0.9
1,505,530 + -0.3
1,505,531 - +0.1
1,505,531 - +0.4
1,505,531 - -0.1
1,505,531 - -0.1
1,505,531 - -0.3
1,505,531 - -0.1
1,505,531 - -1.5
1,505,531 - +0.3
1,505,531 - -0.1
1,505,531 - +0.4
1,505,531 - -0.4
1,505,531 - +0.6
1,505,532 + -1.1
1,505,532 + -2.0
1,505,532 + +0.8
1,505,644 - ABIE41_RS07300 0.14 -0.3
1,505,644 - ABIE41_RS07300 0.14 +0.3
1,505,644 - ABIE41_RS07300 0.14 -0.4
1,505,644 - ABIE41_RS07300 0.14 -1.9
1,505,733 - ABIE41_RS07300 0.19 -0.6
1,505,770 + ABIE41_RS07300 0.21 -0.5
1,505,770 + ABIE41_RS07300 0.21 -0.6
1,505,771 - ABIE41_RS07300 0.21 -0.9
1,505,771 - ABIE41_RS07300 0.21 +0.6
1,505,771 - ABIE41_RS07300 0.21 +0.1
1,505,771 - ABIE41_RS07300 0.21 +0.3
1,505,795 - ABIE41_RS07300 0.22 -0.2
1,505,795 - ABIE41_RS07300 0.22 -0.4
1,505,915 + ABIE41_RS07300 0.29 +1.4
1,505,915 + ABIE41_RS07300 0.29 -0.1
1,505,915 + ABIE41_RS07300 0.29 +0.5
1,505,915 + ABIE41_RS07300 0.29 +1.2
1,506,002 - ABIE41_RS07300 0.33 -0.5
1,506,002 - ABIE41_RS07300 0.33 +0.5
1,506,155 - ABIE41_RS07300 0.41 -0.1
1,506,166 + ABIE41_RS07300 0.42 +0.4
1,506,166 + ABIE41_RS07300 0.42 -0.1
1,506,166 + ABIE41_RS07300 0.42 +1.4
1,506,167 - ABIE41_RS07300 0.42 -0.0
1,506,167 - ABIE41_RS07300 0.42 +0.1
1,506,167 - ABIE41_RS07300 0.42 +1.9
1,506,167 - ABIE41_RS07300 0.42 -0.4
1,506,167 - ABIE41_RS07300 0.42 -0.1
1,506,167 - ABIE41_RS07300 0.42 -0.7
1,506,321 + ABIE41_RS07300 0.50 +0.4
1,506,321 + ABIE41_RS07300 0.50 -2.9
1,506,321 + ABIE41_RS07300 0.50 +1.4
1,506,322 - ABIE41_RS07300 0.50 +1.0
1,506,322 - ABIE41_RS07300 0.50 +1.4
1,506,322 - ABIE41_RS07300 0.50 +0.3
1,506,322 - ABIE41_RS07300 0.50 -1.1
1,506,322 - ABIE41_RS07300 0.50 +0.2
1,506,365 - ABIE41_RS07300 0.53 +0.5
1,506,378 - ABIE41_RS07300 0.53 -0.1
1,506,407 - ABIE41_RS07300 0.55 +1.9
1,506,421 + ABIE41_RS07300 0.56 -0.2
1,506,421 + ABIE41_RS07300 0.56 +0.1
1,506,421 + ABIE41_RS07300 0.56 +0.5
1,506,421 + ABIE41_RS07300 0.56 -1.1
1,506,421 + ABIE41_RS07300 0.56 +0.8
1,506,421 + ABIE41_RS07300 0.56 -0.1
1,506,421 + ABIE41_RS07300 0.56 -0.1
1,506,421 + ABIE41_RS07300 0.56 -0.1
1,506,422 - ABIE41_RS07300 0.56 -0.2
1,506,422 - ABIE41_RS07300 0.56 -2.1
1,506,422 - ABIE41_RS07300 0.56 -0.2
1,506,424 + ABIE41_RS07300 0.56 -0.1
1,506,424 + ABIE41_RS07300 0.56 +0.5
1,506,424 + ABIE41_RS07300 0.56 +0.1
1,506,424 + ABIE41_RS07300 0.56 -0.9
1,506,425 - ABIE41_RS07300 0.56 -0.3
1,506,564 + ABIE41_RS07300 0.63 -0.3
1,506,565 + ABIE41_RS07300 0.63 +0.9
1,506,565 + ABIE41_RS07300 0.63 -0.9
1,506,565 + ABIE41_RS07300 0.63 -0.4
1,506,565 + ABIE41_RS07300 0.63 -0.3
1,506,565 + ABIE41_RS07300 0.63 +0.6
1,506,565 + ABIE41_RS07300 0.63 -0.4
1,506,565 + ABIE41_RS07300 0.63 -0.1
1,506,565 + ABIE41_RS07300 0.63 +0.6
1,506,566 - ABIE41_RS07300 0.63 -1.1
1,506,566 - ABIE41_RS07300 0.63 -0.4
1,506,566 - ABIE41_RS07300 0.63 +0.0
1,506,566 - ABIE41_RS07300 0.63 +0.5
1,506,566 - ABIE41_RS07300 0.63 +0.4
1,506,566 - ABIE41_RS07300 0.63 -0.3
1,506,742 + ABIE41_RS07300 0.73 -0.4
1,506,742 + ABIE41_RS07300 0.73 +0.1
1,506,743 - ABIE41_RS07300 0.73 -0.4
1,506,823 + ABIE41_RS07300 0.77 -0.5
1,506,865 + ABIE41_RS07300 0.80 -0.2
1,506,865 + ABIE41_RS07300 0.80 -0.9
1,506,865 + ABIE41_RS07300 0.80 -0.3
1,506,866 - ABIE41_RS07300 0.80 -0.2
1,506,866 - ABIE41_RS07300 0.80 +0.6
1,507,102 + +0.4
1,507,109 - -0.1
1,507,198 + -0.9
1,507,662 + ABIE41_RS07305 0.24 -0.5
1,507,663 - ABIE41_RS07305 0.24 -0.4
1,507,721 + ABIE41_RS07305 0.31 -0.7
1,507,721 + ABIE41_RS07305 0.31 -0.1
1,507,721 + ABIE41_RS07305 0.31 -0.2
1,507,722 - ABIE41_RS07305 0.31 +0.3
1,508,006 + ABIE41_RS07305 0.65 -0.5
1,508,006 + ABIE41_RS07305 0.65 +0.0
1,508,006 + ABIE41_RS07305 0.65 +0.2
1,508,006 + ABIE41_RS07305 0.65 +0.1
1,508,006 + ABIE41_RS07305 0.65 -0.5
1,508,007 - ABIE41_RS07305 0.65 +0.2
1,508,007 - ABIE41_RS07305 0.65 -0.2
1,508,007 - ABIE41_RS07305 0.65 -0.3
1,508,007 - ABIE41_RS07305 0.65 -0.6

Or see this region's nucleotide sequence