Experiment: R2A with 3-octanone 2.65516666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS03485 and ABIE41_RS03490 are separated by 155 nucleotides ABIE41_RS03490 and ABIE41_RS03495 are separated by 92 nucleotides ABIE41_RS03495 and ABIE41_RS03500 are separated by 96 nucleotides
ABIE41_RS03485: ABIE41_RS03485 - molecular chaperone DnaK, at 725,802 to 727,727
_RS03485
ABIE41_RS03490: ABIE41_RS03490 - molecular chaperone DnaJ, at 727,883 to 729,013
_RS03490
ABIE41_RS03495: ABIE41_RS03495 - CsbD family protein, at 729,106 to 729,297
_RS03495
ABIE41_RS03500: ABIE41_RS03500 - helix-turn-helix transcriptional regulator, at 729,394 to 730,218
_RS03500
Position (kb) 727
728
729
730 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 727.593 kb on + strand at 727.593 kb on + strand at 727.593 kb on + strand at 727.593 kb on + strand at 727.593 kb on + strand at 727.593 kb on + strand at 727.594 kb on - strand at 727.594 kb on - strand at 727.898 kb on + strand at 727.902 kb on - strand at 727.902 kb on - strand at 728.023 kb on - strand, within ABIE41_RS03490 at 728.043 kb on - strand, within ABIE41_RS03490 at 728.043 kb on - strand, within ABIE41_RS03490 at 728.079 kb on - strand, within ABIE41_RS03490 at 728.079 kb on - strand, within ABIE41_RS03490 at 728.079 kb on - strand, within ABIE41_RS03490 at 728.240 kb on + strand, within ABIE41_RS03490 at 728.240 kb on + strand, within ABIE41_RS03490 at 728.240 kb on + strand, within ABIE41_RS03490 at 728.241 kb on - strand, within ABIE41_RS03490 at 728.241 kb on - strand, within ABIE41_RS03490 at 728.618 kb on + strand, within ABIE41_RS03490 at 728.618 kb on + strand, within ABIE41_RS03490 at 728.618 kb on + strand, within ABIE41_RS03490 at 728.618 kb on + strand, within ABIE41_RS03490 at 728.618 kb on + strand, within ABIE41_RS03490 at 728.618 kb on + strand, within ABIE41_RS03490 at 728.619 kb on - strand, within ABIE41_RS03490 at 728.619 kb on - strand, within ABIE41_RS03490 at 728.724 kb on + strand, within ABIE41_RS03490 at 728.724 kb on + strand, within ABIE41_RS03490 at 728.724 kb on + strand, within ABIE41_RS03490 at 728.725 kb on - strand, within ABIE41_RS03490 at 728.725 kb on - strand, within ABIE41_RS03490 at 728.725 kb on - strand, within ABIE41_RS03490 at 728.852 kb on + strand, within ABIE41_RS03490 at 728.853 kb on - strand, within ABIE41_RS03490 at 728.853 kb on - strand, within ABIE41_RS03490 at 728.853 kb on - strand, within ABIE41_RS03490 at 728.853 kb on - strand, within ABIE41_RS03490 at 728.853 kb on - strand, within ABIE41_RS03490 at 729.033 kb on + strand at 729.034 kb on - strand at 729.292 kb on - strand at 729.498 kb on + strand, within ABIE41_RS03500 at 729.980 kb on + strand, within ABIE41_RS03500 at 729.980 kb on + strand, within ABIE41_RS03500 at 729.980 kb on + strand, within ABIE41_RS03500 at 729.980 kb on + strand, within ABIE41_RS03500 at 729.980 kb on + strand, within ABIE41_RS03500 at 729.981 kb on - strand, within ABIE41_RS03500 at 729.992 kb on + strand, within ABIE41_RS03500
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM remove 727,593 + -0.3 727,593 + -0.1 727,593 + -0.7 727,593 + +0.4 727,593 + +0.3 727,593 + -0.4 727,594 - +3.5 727,594 - -0.4 727,898 + -0.8 727,902 - -2.9 727,902 - -0.2 728,023 - ABIE41_RS03490 0.12 -1.9 728,043 - ABIE41_RS03490 0.14 +0.5 728,043 - ABIE41_RS03490 0.14 +0.5 728,079 - ABIE41_RS03490 0.17 -0.7 728,079 - ABIE41_RS03490 0.17 +1.3 728,079 - ABIE41_RS03490 0.17 -1.3 728,240 + ABIE41_RS03490 0.32 -1.9 728,240 + ABIE41_RS03490 0.32 -1.2 728,240 + ABIE41_RS03490 0.32 -0.8 728,241 - ABIE41_RS03490 0.32 -1.5 728,241 - ABIE41_RS03490 0.32 -1.0 728,618 + ABIE41_RS03490 0.65 -0.9 728,618 + ABIE41_RS03490 0.65 -0.4 728,618 + ABIE41_RS03490 0.65 -0.5 728,618 + ABIE41_RS03490 0.65 -0.1 728,618 + ABIE41_RS03490 0.65 -1.2 728,618 + ABIE41_RS03490 0.65 -1.0 728,619 - ABIE41_RS03490 0.65 -0.5 728,619 - ABIE41_RS03490 0.65 +0.3 728,724 + ABIE41_RS03490 0.74 -0.7 728,724 + ABIE41_RS03490 0.74 +1.9 728,724 + ABIE41_RS03490 0.74 -1.3 728,725 - ABIE41_RS03490 0.74 -1.5 728,725 - ABIE41_RS03490 0.74 -1.1 728,725 - ABIE41_RS03490 0.74 -0.5 728,852 + ABIE41_RS03490 0.86 -2.0 728,853 - ABIE41_RS03490 0.86 -0.4 728,853 - ABIE41_RS03490 0.86 -0.3 728,853 - ABIE41_RS03490 0.86 -1.0 728,853 - ABIE41_RS03490 0.86 +0.8 728,853 - ABIE41_RS03490 0.86 -0.4 729,033 + +0.3 729,034 - -1.3 729,292 - +0.9 729,498 + ABIE41_RS03500 0.13 -0.0 729,980 + ABIE41_RS03500 0.71 +0.9 729,980 + ABIE41_RS03500 0.71 -0.1 729,980 + ABIE41_RS03500 0.71 +0.1 729,980 + ABIE41_RS03500 0.71 +3.5 729,980 + ABIE41_RS03500 0.71 -0.0 729,981 - ABIE41_RS03500 0.71 -2.6 729,992 + ABIE41_RS03500 0.72 +0.4
Or see this region's nucleotide sequence