Experiment: Xanthosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04654 and PFR28_04655 are separated by 130 nucleotides PFR28_04655 and PFR28_04656 are separated by 13 nucleotides
PFR28_04654: PFR28_04654 - C4-dicarboxylic acid transporter DauA, at 5,313,741 to 5,315,309
_04654
PFR28_04655: PFR28_04655 - Shikimate dehydrogenase (NADP(+)), at 5,315,440 to 5,316,261
_04655
PFR28_04656: PFR28_04656 - Oxygen-dependent coproporphyrinogen-III oxidase, at 5,316,275 to 5,317,189
_04656
Position (kb)
5315
5316
5317 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5314.501 kb on + strand, within PFR28_04654 at 5314.502 kb on - strand, within PFR28_04654 at 5314.704 kb on + strand, within PFR28_04654 at 5314.704 kb on + strand, within PFR28_04654 at 5314.705 kb on - strand, within PFR28_04654 at 5314.705 kb on - strand, within PFR28_04654 at 5314.803 kb on - strand, within PFR28_04654 at 5314.875 kb on + strand, within PFR28_04654 at 5314.875 kb on + strand, within PFR28_04654 at 5314.956 kb on + strand, within PFR28_04654 at 5314.956 kb on + strand, within PFR28_04654 at 5314.956 kb on + strand, within PFR28_04654 at 5314.956 kb on + strand, within PFR28_04654 at 5314.957 kb on - strand, within PFR28_04654 at 5314.957 kb on - strand, within PFR28_04654 at 5314.957 kb on - strand, within PFR28_04654 at 5314.957 kb on - strand, within PFR28_04654 at 5314.957 kb on - strand, within PFR28_04654 at 5314.957 kb on - strand, within PFR28_04654 at 5314.957 kb on - strand, within PFR28_04654 at 5314.957 kb on - strand, within PFR28_04654 at 5314.957 kb on - strand, within PFR28_04654 at 5314.957 kb on - strand, within PFR28_04654 at 5314.957 kb on - strand, within PFR28_04654 at 5314.957 kb on - strand, within PFR28_04654 at 5314.957 kb on - strand, within PFR28_04654 at 5314.987 kb on - strand, within PFR28_04654 at 5315.085 kb on + strand, within PFR28_04654 at 5315.086 kb on - strand, within PFR28_04654 at 5315.095 kb on + strand, within PFR28_04654 at 5315.095 kb on + strand, within PFR28_04654 at 5315.095 kb on + strand, within PFR28_04654 at 5315.095 kb on + strand, within PFR28_04654 at 5315.096 kb on - strand, within PFR28_04654 at 5315.096 kb on - strand, within PFR28_04654 at 5315.335 kb on + strand at 5315.355 kb on + strand at 5315.411 kb on + strand at 5315.412 kb on - strand at 5315.412 kb on - strand at 5315.412 kb on - strand at 5315.412 kb on - strand at 5315.441 kb on + strand at 5316.252 kb on - strand at 5317.225 kb on - strand at 5317.225 kb on - strand at 5317.258 kb on + strand at 5317.259 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xanthosine (C) remove 5,314,501 + PFR28_04654 0.48 +0.4 5,314,502 - PFR28_04654 0.49 -0.3 5,314,704 + PFR28_04654 0.61 +0.9 5,314,704 + PFR28_04654 0.61 -2.3 5,314,705 - PFR28_04654 0.61 -0.6 5,314,705 - PFR28_04654 0.61 -1.2 5,314,803 - PFR28_04654 0.68 -0.1 5,314,875 + PFR28_04654 0.72 +1.2 5,314,875 + PFR28_04654 0.72 -0.4 5,314,956 + PFR28_04654 0.77 -0.6 5,314,956 + PFR28_04654 0.77 -0.4 5,314,956 + PFR28_04654 0.77 +2.3 5,314,956 + PFR28_04654 0.77 -1.2 5,314,957 - PFR28_04654 0.78 +0.7 5,314,957 - PFR28_04654 0.78 +0.4 5,314,957 - PFR28_04654 0.78 +1.3 5,314,957 - PFR28_04654 0.78 +0.3 5,314,957 - PFR28_04654 0.78 -0.6 5,314,957 - PFR28_04654 0.78 +0.2 5,314,957 - PFR28_04654 0.78 +0.7 5,314,957 - PFR28_04654 0.78 +1.0 5,314,957 - PFR28_04654 0.78 -0.2 5,314,957 - PFR28_04654 0.78 +0.6 5,314,957 - PFR28_04654 0.78 +0.6 5,314,957 - PFR28_04654 0.78 +1.2 5,314,957 - PFR28_04654 0.78 +0.1 5,314,987 - PFR28_04654 0.79 +0.7 5,315,085 + PFR28_04654 0.86 -1.5 5,315,086 - PFR28_04654 0.86 +0.3 5,315,095 + PFR28_04654 0.86 +1.3 5,315,095 + PFR28_04654 0.86 -0.8 5,315,095 + PFR28_04654 0.86 +0.2 5,315,095 + PFR28_04654 0.86 +1.2 5,315,096 - PFR28_04654 0.86 +1.3 5,315,096 - PFR28_04654 0.86 -0.1 5,315,335 + +0.6 5,315,355 + -0.2 5,315,411 + -0.4 5,315,412 - -0.1 5,315,412 - -0.3 5,315,412 - -1.0 5,315,412 - -2.2 5,315,441 + +0.5 5,316,252 - -0.5 5,317,225 - +0.5 5,317,225 - +0.9 5,317,258 + -0.7 5,317,259 - -1.2
Or see this region's nucleotide sequence