Strain Fitness in Pseudomonas sp. RS175 around PFR28_04655

Experiment: Xanthosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04654 and PFR28_04655 are separated by 130 nucleotidesPFR28_04655 and PFR28_04656 are separated by 13 nucleotides PFR28_04654: PFR28_04654 - C4-dicarboxylic acid transporter DauA, at 5,313,741 to 5,315,309 _04654 PFR28_04655: PFR28_04655 - Shikimate dehydrogenase (NADP(+)), at 5,315,440 to 5,316,261 _04655 PFR28_04656: PFR28_04656 - Oxygen-dependent coproporphyrinogen-III oxidase, at 5,316,275 to 5,317,189 _04656 Position (kb) 5315 5316 5317Strain fitness (log2 ratio) -2 -1 0 1 2at 5314.501 kb on + strand, within PFR28_04654at 5314.502 kb on - strand, within PFR28_04654at 5314.704 kb on + strand, within PFR28_04654at 5314.704 kb on + strand, within PFR28_04654at 5314.705 kb on - strand, within PFR28_04654at 5314.705 kb on - strand, within PFR28_04654at 5314.803 kb on - strand, within PFR28_04654at 5314.875 kb on + strand, within PFR28_04654at 5314.875 kb on + strand, within PFR28_04654at 5314.956 kb on + strand, within PFR28_04654at 5314.956 kb on + strand, within PFR28_04654at 5314.956 kb on + strand, within PFR28_04654at 5314.956 kb on + strand, within PFR28_04654at 5314.957 kb on - strand, within PFR28_04654at 5314.957 kb on - strand, within PFR28_04654at 5314.957 kb on - strand, within PFR28_04654at 5314.957 kb on - strand, within PFR28_04654at 5314.957 kb on - strand, within PFR28_04654at 5314.957 kb on - strand, within PFR28_04654at 5314.957 kb on - strand, within PFR28_04654at 5314.957 kb on - strand, within PFR28_04654at 5314.957 kb on - strand, within PFR28_04654at 5314.957 kb on - strand, within PFR28_04654at 5314.957 kb on - strand, within PFR28_04654at 5314.957 kb on - strand, within PFR28_04654at 5314.957 kb on - strand, within PFR28_04654at 5314.987 kb on - strand, within PFR28_04654at 5315.085 kb on + strand, within PFR28_04654at 5315.086 kb on - strand, within PFR28_04654at 5315.095 kb on + strand, within PFR28_04654at 5315.095 kb on + strand, within PFR28_04654at 5315.095 kb on + strand, within PFR28_04654at 5315.095 kb on + strand, within PFR28_04654at 5315.096 kb on - strand, within PFR28_04654at 5315.096 kb on - strand, within PFR28_04654at 5315.335 kb on + strandat 5315.355 kb on + strandat 5315.411 kb on + strandat 5315.412 kb on - strandat 5315.412 kb on - strandat 5315.412 kb on - strandat 5315.412 kb on - strandat 5315.441 kb on + strandat 5316.252 kb on - strandat 5317.225 kb on - strandat 5317.225 kb on - strandat 5317.258 kb on + strandat 5317.259 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthosine (C)
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5,314,501 + PFR28_04654 0.48 +0.4
5,314,502 - PFR28_04654 0.49 -0.3
5,314,704 + PFR28_04654 0.61 +0.9
5,314,704 + PFR28_04654 0.61 -2.3
5,314,705 - PFR28_04654 0.61 -0.6
5,314,705 - PFR28_04654 0.61 -1.2
5,314,803 - PFR28_04654 0.68 -0.1
5,314,875 + PFR28_04654 0.72 +1.2
5,314,875 + PFR28_04654 0.72 -0.4
5,314,956 + PFR28_04654 0.77 -0.6
5,314,956 + PFR28_04654 0.77 -0.4
5,314,956 + PFR28_04654 0.77 +2.3
5,314,956 + PFR28_04654 0.77 -1.2
5,314,957 - PFR28_04654 0.78 +0.7
5,314,957 - PFR28_04654 0.78 +0.4
5,314,957 - PFR28_04654 0.78 +1.3
5,314,957 - PFR28_04654 0.78 +0.3
5,314,957 - PFR28_04654 0.78 -0.6
5,314,957 - PFR28_04654 0.78 +0.2
5,314,957 - PFR28_04654 0.78 +0.7
5,314,957 - PFR28_04654 0.78 +1.0
5,314,957 - PFR28_04654 0.78 -0.2
5,314,957 - PFR28_04654 0.78 +0.6
5,314,957 - PFR28_04654 0.78 +0.6
5,314,957 - PFR28_04654 0.78 +1.2
5,314,957 - PFR28_04654 0.78 +0.1
5,314,987 - PFR28_04654 0.79 +0.7
5,315,085 + PFR28_04654 0.86 -1.5
5,315,086 - PFR28_04654 0.86 +0.3
5,315,095 + PFR28_04654 0.86 +1.3
5,315,095 + PFR28_04654 0.86 -0.8
5,315,095 + PFR28_04654 0.86 +0.2
5,315,095 + PFR28_04654 0.86 +1.2
5,315,096 - PFR28_04654 0.86 +1.3
5,315,096 - PFR28_04654 0.86 -0.1
5,315,335 + +0.6
5,315,355 + -0.2
5,315,411 + -0.4
5,315,412 - -0.1
5,315,412 - -0.3
5,315,412 - -1.0
5,315,412 - -2.2
5,315,441 + +0.5
5,316,252 - -0.5
5,317,225 - +0.5
5,317,225 - +0.9
5,317,258 + -0.7
5,317,259 - -1.2

Or see this region's nucleotide sequence