Strain Fitness in Pseudomonas sp. RS175 around PFR28_01528

Experiment: Xanthosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01527 and PFR28_01528 are separated by 70 nucleotidesPFR28_01528 and PFR28_01529 are separated by 106 nucleotides PFR28_01527: PFR28_01527 - Carboxynorspermidine/carboxyspermidine decarboxylase, at 1,676,108 to 1,677,205 _01527 PFR28_01528: PFR28_01528 - Carboxynorspermidine synthase, at 1,677,276 to 1,678,466 _01528 PFR28_01529: PFR28_01529 - Glycine cleavage system transcriptional activator, at 1,678,573 to 1,679,475 _01529 Position (kb) 1677 1678 1679Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1676.288 kb on + strand, within PFR28_01527at 1676.289 kb on - strand, within PFR28_01527at 1676.337 kb on - strand, within PFR28_01527at 1676.493 kb on - strand, within PFR28_01527at 1676.493 kb on - strand, within PFR28_01527at 1676.675 kb on - strand, within PFR28_01527at 1676.675 kb on - strand, within PFR28_01527at 1676.675 kb on - strand, within PFR28_01527at 1676.726 kb on + strand, within PFR28_01527at 1676.774 kb on + strand, within PFR28_01527at 1676.775 kb on - strand, within PFR28_01527at 1676.775 kb on - strand, within PFR28_01527at 1676.859 kb on - strand, within PFR28_01527at 1676.925 kb on - strand, within PFR28_01527at 1676.925 kb on - strand, within PFR28_01527at 1676.969 kb on + strand, within PFR28_01527at 1676.970 kb on - strand, within PFR28_01527at 1676.970 kb on - strand, within PFR28_01527at 1676.970 kb on - strand, within PFR28_01527at 1676.970 kb on - strand, within PFR28_01527at 1676.970 kb on - strand, within PFR28_01527at 1676.970 kb on - strand, within PFR28_01527at 1676.970 kb on - strand, within PFR28_01527at 1676.970 kb on - strand, within PFR28_01527at 1676.977 kb on - strand, within PFR28_01527at 1676.977 kb on - strand, within PFR28_01527at 1677.186 kb on - strandat 1677.186 kb on - strandat 1677.186 kb on - strandat 1677.186 kb on - strandat 1677.203 kb on + strandat 1677.204 kb on - strandat 1677.248 kb on + strandat 1677.249 kb on - strandat 1677.321 kb on - strandat 1677.321 kb on - strandat 1677.553 kb on - strand, within PFR28_01528at 1677.553 kb on - strand, within PFR28_01528at 1677.618 kb on + strand, within PFR28_01528at 1677.619 kb on - strand, within PFR28_01528at 1677.619 kb on - strand, within PFR28_01528at 1677.619 kb on - strand, within PFR28_01528at 1677.619 kb on - strand, within PFR28_01528at 1677.619 kb on - strand, within PFR28_01528at 1677.729 kb on + strand, within PFR28_01528at 1677.729 kb on + strand, within PFR28_01528at 1677.729 kb on + strand, within PFR28_01528at 1677.729 kb on + strand, within PFR28_01528at 1677.729 kb on + strand, within PFR28_01528at 1677.730 kb on - strand, within PFR28_01528at 1677.730 kb on - strand, within PFR28_01528at 1677.730 kb on - strand, within PFR28_01528at 1677.730 kb on - strand, within PFR28_01528at 1677.730 kb on - strand, within PFR28_01528at 1677.789 kb on + strand, within PFR28_01528at 1677.789 kb on + strand, within PFR28_01528at 1677.790 kb on - strand, within PFR28_01528at 1677.790 kb on - strand, within PFR28_01528at 1677.937 kb on - strand, within PFR28_01528at 1678.023 kb on + strand, within PFR28_01528at 1678.023 kb on + strand, within PFR28_01528at 1678.023 kb on + strand, within PFR28_01528at 1678.024 kb on - strand, within PFR28_01528at 1678.024 kb on - strand, within PFR28_01528at 1678.118 kb on - strand, within PFR28_01528at 1678.118 kb on - strand, within PFR28_01528at 1678.233 kb on + strand, within PFR28_01528at 1678.234 kb on - strand, within PFR28_01528at 1678.234 kb on - strand, within PFR28_01528at 1678.234 kb on - strand, within PFR28_01528at 1678.234 kb on - strand, within PFR28_01528at 1678.234 kb on - strand, within PFR28_01528at 1678.234 kb on - strand, within PFR28_01528at 1678.234 kb on - strand, within PFR28_01528at 1678.234 kb on - strand, within PFR28_01528at 1678.261 kb on - strand, within PFR28_01528at 1678.290 kb on + strand, within PFR28_01528at 1678.290 kb on + strand, within PFR28_01528at 1678.291 kb on - strand, within PFR28_01528at 1678.292 kb on + strand, within PFR28_01528at 1678.664 kb on + strand, within PFR28_01529at 1678.664 kb on + strand, within PFR28_01529at 1678.664 kb on + strand, within PFR28_01529at 1678.664 kb on + strand, within PFR28_01529at 1678.665 kb on - strand, within PFR28_01529at 1678.894 kb on + strand, within PFR28_01529at 1678.894 kb on + strand, within PFR28_01529at 1678.894 kb on + strand, within PFR28_01529at 1678.894 kb on + strand, within PFR28_01529at 1678.895 kb on - strand, within PFR28_01529at 1678.997 kb on + strand, within PFR28_01529at 1678.998 kb on - strand, within PFR28_01529at 1679.098 kb on + strand, within PFR28_01529at 1679.117 kb on + strand, within PFR28_01529at 1679.117 kb on + strand, within PFR28_01529at 1679.117 kb on + strand, within PFR28_01529at 1679.117 kb on + strand, within PFR28_01529at 1679.117 kb on + strand, within PFR28_01529at 1679.117 kb on + strand, within PFR28_01529at 1679.118 kb on - strand, within PFR28_01529at 1679.118 kb on - strand, within PFR28_01529at 1679.220 kb on + strand, within PFR28_01529at 1679.221 kb on - strand, within PFR28_01529at 1679.221 kb on - strand, within PFR28_01529at 1679.265 kb on - strand, within PFR28_01529

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthosine (C)
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1,676,288 + PFR28_01527 0.16 -0.3
1,676,289 - PFR28_01527 0.16 -3.8
1,676,337 - PFR28_01527 0.21 -1.2
1,676,493 - PFR28_01527 0.35 -2.7
1,676,493 - PFR28_01527 0.35 -0.8
1,676,675 - PFR28_01527 0.52 -0.7
1,676,675 - PFR28_01527 0.52 -0.7
1,676,675 - PFR28_01527 0.52 -2.7
1,676,726 + PFR28_01527 0.56 +1.2
1,676,774 + PFR28_01527 0.61 +1.2
1,676,775 - PFR28_01527 0.61 -1.4
1,676,775 - PFR28_01527 0.61 -1.8
1,676,859 - PFR28_01527 0.68 -2.3
1,676,925 - PFR28_01527 0.74 -0.4
1,676,925 - PFR28_01527 0.74 -0.3
1,676,969 + PFR28_01527 0.78 -0.8
1,676,970 - PFR28_01527 0.79 -2.0
1,676,970 - PFR28_01527 0.79 +1.2
1,676,970 - PFR28_01527 0.79 +0.7
1,676,970 - PFR28_01527 0.79 -0.5
1,676,970 - PFR28_01527 0.79 -2.0
1,676,970 - PFR28_01527 0.79 -2.0
1,676,970 - PFR28_01527 0.79 +0.3
1,676,970 - PFR28_01527 0.79 -1.8
1,676,977 - PFR28_01527 0.79 -0.5
1,676,977 - PFR28_01527 0.79 -0.2
1,677,186 - -1.5
1,677,186 - -2.4
1,677,186 - -1.6
1,677,186 - +1.2
1,677,203 + +0.4
1,677,204 - +0.6
1,677,248 + -0.4
1,677,249 - -0.4
1,677,321 - -1.0
1,677,321 - +0.2
1,677,553 - PFR28_01528 0.23 -1.5
1,677,553 - PFR28_01528 0.23 +0.3
1,677,618 + PFR28_01528 0.29 -1.4
1,677,619 - PFR28_01528 0.29 -1.8
1,677,619 - PFR28_01528 0.29 -0.1
1,677,619 - PFR28_01528 0.29 +1.7
1,677,619 - PFR28_01528 0.29 +0.3
1,677,619 - PFR28_01528 0.29 -1.5
1,677,729 + PFR28_01528 0.38 -0.5
1,677,729 + PFR28_01528 0.38 -0.1
1,677,729 + PFR28_01528 0.38 +2.7
1,677,729 + PFR28_01528 0.38 -1.5
1,677,729 + PFR28_01528 0.38 -1.0
1,677,730 - PFR28_01528 0.38 +0.4
1,677,730 - PFR28_01528 0.38 -1.0
1,677,730 - PFR28_01528 0.38 -3.4
1,677,730 - PFR28_01528 0.38 -2.8
1,677,730 - PFR28_01528 0.38 -0.6
1,677,789 + PFR28_01528 0.43 -0.4
1,677,789 + PFR28_01528 0.43 -2.2
1,677,790 - PFR28_01528 0.43 +0.8
1,677,790 - PFR28_01528 0.43 +0.6
1,677,937 - PFR28_01528 0.55 -3.4
1,678,023 + PFR28_01528 0.63 -0.9
1,678,023 + PFR28_01528 0.63 +0.2
1,678,023 + PFR28_01528 0.63 -0.4
1,678,024 - PFR28_01528 0.63 -0.1
1,678,024 - PFR28_01528 0.63 -1.6
1,678,118 - PFR28_01528 0.71 +0.5
1,678,118 - PFR28_01528 0.71 +0.9
1,678,233 + PFR28_01528 0.80 -1.4
1,678,234 - PFR28_01528 0.80 -2.0
1,678,234 - PFR28_01528 0.80 -1.2
1,678,234 - PFR28_01528 0.80 +0.0
1,678,234 - PFR28_01528 0.80 +0.6
1,678,234 - PFR28_01528 0.80 +1.9
1,678,234 - PFR28_01528 0.80 +0.6
1,678,234 - PFR28_01528 0.80 +1.0
1,678,234 - PFR28_01528 0.80 -0.2
1,678,261 - PFR28_01528 0.83 -0.5
1,678,290 + PFR28_01528 0.85 +1.6
1,678,290 + PFR28_01528 0.85 -0.3
1,678,291 - PFR28_01528 0.85 +0.7
1,678,292 + PFR28_01528 0.85 +0.6
1,678,664 + PFR28_01529 0.10 +2.1
1,678,664 + PFR28_01529 0.10 +0.3
1,678,664 + PFR28_01529 0.10 -0.8
1,678,664 + PFR28_01529 0.10 +0.2
1,678,665 - PFR28_01529 0.10 +0.3
1,678,894 + PFR28_01529 0.36 +0.7
1,678,894 + PFR28_01529 0.36 +2.4
1,678,894 + PFR28_01529 0.36 +0.1
1,678,894 + PFR28_01529 0.36 +0.0
1,678,895 - PFR28_01529 0.36 -2.0
1,678,997 + PFR28_01529 0.47 -2.4
1,678,998 - PFR28_01529 0.47 +0.8
1,679,098 + PFR28_01529 0.58 +0.3
1,679,117 + PFR28_01529 0.60 +1.1
1,679,117 + PFR28_01529 0.60 -0.9
1,679,117 + PFR28_01529 0.60 +0.2
1,679,117 + PFR28_01529 0.60 -0.3
1,679,117 + PFR28_01529 0.60 +0.6
1,679,117 + PFR28_01529 0.60 +0.6
1,679,118 - PFR28_01529 0.60 -0.9
1,679,118 - PFR28_01529 0.60 -0.3
1,679,220 + PFR28_01529 0.72 -2.7
1,679,221 - PFR28_01529 0.72 -0.0
1,679,221 - PFR28_01529 0.72 -0.0
1,679,265 - PFR28_01529 0.77 +0.4

Or see this region's nucleotide sequence