Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17595

Experiment: R2A with 3-octanone 2.65516666666667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS17585 and ABIE41_RS17590 overlap by 4 nucleotidesABIE41_RS17590 and ABIE41_RS17595 are separated by 59 nucleotidesABIE41_RS17595 and ABIE41_RS17600 are separated by 159 nucleotides ABIE41_RS17585: ABIE41_RS17585 - phosphatidate cytidylyltransferase, at 3,620,414 to 3,621,241 _RS17585 ABIE41_RS17590: ABIE41_RS17590 - isoprenyl transferase, at 3,621,238 to 3,621,996 _RS17590 ABIE41_RS17595: ABIE41_RS17595 - ribosome recycling factor, at 3,622,056 to 3,622,619 _RS17595 ABIE41_RS17600: ABIE41_RS17600 - UMP kinase, at 3,622,779 to 3,623,486 _RS17600 Position (kb) 3622 3623Strain fitness (log2 ratio) -1 0 1at 3622.696 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM
remove
3,622,696 - -0.2

Or see this region's nucleotide sequence