Experiment: R2A with 3-octanone 2.65516666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS05360 and ABIE41_RS05365 are separated by 109 nucleotides ABIE41_RS05365 and ABIE41_RS05370 overlap by 53 nucleotides
ABIE41_RS05360: ABIE41_RS05360 - bifunctional enoyl-CoA hydratase/phosphate acetyltransferase, at 1,109,555 to 1,110,970
_RS05360
ABIE41_RS05365: ABIE41_RS05365 - transglycosylase SLT domain-containing protein, at 1,111,080 to 1,111,661
_RS05365
ABIE41_RS05370: ABIE41_RS05370 - flagellar hook-length control protein FliK, at 1,111,609 to 1,112,814
_RS05370
Position (kb)
1111
1112 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1110.096 kb on + strand, within ABIE41_RS05360 at 1110.117 kb on + strand, within ABIE41_RS05360 at 1110.117 kb on + strand, within ABIE41_RS05360 at 1110.117 kb on + strand, within ABIE41_RS05360 at 1110.117 kb on + strand, within ABIE41_RS05360 at 1110.117 kb on + strand, within ABIE41_RS05360 at 1110.117 kb on + strand, within ABIE41_RS05360 at 1110.118 kb on - strand, within ABIE41_RS05360 at 1110.118 kb on - strand, within ABIE41_RS05360 at 1110.118 kb on - strand, within ABIE41_RS05360 at 1110.118 kb on - strand, within ABIE41_RS05360 at 1110.118 kb on - strand, within ABIE41_RS05360 at 1110.481 kb on - strand, within ABIE41_RS05360 at 1110.717 kb on + strand, within ABIE41_RS05360 at 1110.717 kb on + strand, within ABIE41_RS05360 at 1110.717 kb on + strand, within ABIE41_RS05360 at 1110.717 kb on + strand, within ABIE41_RS05360 at 1110.717 kb on + strand, within ABIE41_RS05360 at 1110.717 kb on + strand, within ABIE41_RS05360 at 1110.717 kb on + strand, within ABIE41_RS05360 at 1110.717 kb on + strand, within ABIE41_RS05360 at 1110.718 kb on - strand, within ABIE41_RS05360 at 1110.718 kb on - strand, within ABIE41_RS05360 at 1110.803 kb on + strand, within ABIE41_RS05360 at 1110.803 kb on + strand, within ABIE41_RS05360 at 1110.803 kb on + strand, within ABIE41_RS05360 at 1111.008 kb on + strand at 1111.008 kb on + strand at 1111.026 kb on - strand at 1111.081 kb on + strand at 1111.082 kb on - strand at 1111.082 kb on - strand at 1111.093 kb on + strand at 1111.177 kb on + strand, within ABIE41_RS05365 at 1111.177 kb on + strand, within ABIE41_RS05365 at 1111.177 kb on + strand, within ABIE41_RS05365 at 1111.177 kb on + strand, within ABIE41_RS05365 at 1111.177 kb on + strand, within ABIE41_RS05365 at 1111.178 kb on - strand, within ABIE41_RS05365 at 1111.178 kb on - strand, within ABIE41_RS05365 at 1111.216 kb on + strand, within ABIE41_RS05365 at 1111.217 kb on - strand, within ABIE41_RS05365 at 1111.217 kb on - strand, within ABIE41_RS05365 at 1111.283 kb on - strand, within ABIE41_RS05365 at 1111.342 kb on + strand, within ABIE41_RS05365 at 1111.342 kb on + strand, within ABIE41_RS05365 at 1111.343 kb on - strand, within ABIE41_RS05365 at 1111.343 kb on - strand, within ABIE41_RS05365 at 1111.343 kb on - strand, within ABIE41_RS05365 at 1111.343 kb on - strand, within ABIE41_RS05365 at 1111.519 kb on + strand, within ABIE41_RS05365 at 1111.519 kb on + strand, within ABIE41_RS05365 at 1111.519 kb on + strand, within ABIE41_RS05365 at 1111.520 kb on - strand, within ABIE41_RS05365 at 1111.543 kb on + strand, within ABIE41_RS05365 at 1111.543 kb on + strand, within ABIE41_RS05365 at 1111.544 kb on - strand, within ABIE41_RS05365 at 1111.544 kb on - strand, within ABIE41_RS05365 at 1111.610 kb on + strand at 1111.611 kb on - strand at 1111.616 kb on + strand at 1111.616 kb on + strand at 1111.616 kb on + strand at 1111.617 kb on - strand at 1111.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM remove 1,110,096 + ABIE41_RS05360 0.38 +0.3 1,110,117 + ABIE41_RS05360 0.40 +0.1 1,110,117 + ABIE41_RS05360 0.40 +0.0 1,110,117 + ABIE41_RS05360 0.40 -0.2 1,110,117 + ABIE41_RS05360 0.40 +0.7 1,110,117 + ABIE41_RS05360 0.40 +1.3 1,110,117 + ABIE41_RS05360 0.40 +0.7 1,110,118 - ABIE41_RS05360 0.40 -0.5 1,110,118 - ABIE41_RS05360 0.40 -1.2 1,110,118 - ABIE41_RS05360 0.40 +0.4 1,110,118 - ABIE41_RS05360 0.40 +0.1 1,110,118 - ABIE41_RS05360 0.40 -1.6 1,110,481 - ABIE41_RS05360 0.65 +1.9 1,110,717 + ABIE41_RS05360 0.82 +0.4 1,110,717 + ABIE41_RS05360 0.82 -0.3 1,110,717 + ABIE41_RS05360 0.82 -0.0 1,110,717 + ABIE41_RS05360 0.82 +0.1 1,110,717 + ABIE41_RS05360 0.82 +1.4 1,110,717 + ABIE41_RS05360 0.82 +0.9 1,110,717 + ABIE41_RS05360 0.82 +0.4 1,110,717 + ABIE41_RS05360 0.82 +0.9 1,110,718 - ABIE41_RS05360 0.82 +0.5 1,110,718 - ABIE41_RS05360 0.82 +1.2 1,110,803 + ABIE41_RS05360 0.88 -0.3 1,110,803 + ABIE41_RS05360 0.88 -1.5 1,110,803 + ABIE41_RS05360 0.88 +0.7 1,111,008 + +0.9 1,111,008 + +0.4 1,111,026 - +0.3 1,111,081 + +0.2 1,111,082 - +0.2 1,111,082 - -1.1 1,111,093 + +0.5 1,111,177 + ABIE41_RS05365 0.17 +1.5 1,111,177 + ABIE41_RS05365 0.17 +0.7 1,111,177 + ABIE41_RS05365 0.17 +0.1 1,111,177 + ABIE41_RS05365 0.17 +2.6 1,111,177 + ABIE41_RS05365 0.17 +1.0 1,111,178 - ABIE41_RS05365 0.17 +0.9 1,111,178 - ABIE41_RS05365 0.17 +0.3 1,111,216 + ABIE41_RS05365 0.23 -0.3 1,111,217 - ABIE41_RS05365 0.24 +0.7 1,111,217 - ABIE41_RS05365 0.24 +1.1 1,111,283 - ABIE41_RS05365 0.35 -0.3 1,111,342 + ABIE41_RS05365 0.45 -0.1 1,111,342 + ABIE41_RS05365 0.45 -1.4 1,111,343 - ABIE41_RS05365 0.45 -0.3 1,111,343 - ABIE41_RS05365 0.45 +1.3 1,111,343 - ABIE41_RS05365 0.45 +0.6 1,111,343 - ABIE41_RS05365 0.45 +0.3 1,111,519 + ABIE41_RS05365 0.75 +1.7 1,111,519 + ABIE41_RS05365 0.75 -2.1 1,111,519 + ABIE41_RS05365 0.75 +0.7 1,111,520 - ABIE41_RS05365 0.76 +0.1 1,111,543 + ABIE41_RS05365 0.80 +0.0 1,111,543 + ABIE41_RS05365 0.80 +0.3 1,111,544 - ABIE41_RS05365 0.80 +0.5 1,111,544 - ABIE41_RS05365 0.80 -1.8 1,111,610 + +0.9 1,111,611 - +1.7 1,111,616 + +0.6 1,111,616 + -0.4 1,111,616 + +0.6 1,111,617 - +0.5 1,111,617 - -0.0
Or see this region's nucleotide sequence