Experiment: R2A with 3-octanone 2.65516666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04135 and ABIE41_RS04140 are separated by 62 nucleotides ABIE41_RS04140 and ABIE41_RS04145 are separated by 241 nucleotides ABIE41_RS04145 and ABIE41_RS04150 are separated by 118 nucleotides
ABIE41_RS04135: ABIE41_RS04135 - glutaminase, at 854,360 to 855,292
_RS04135
ABIE41_RS04140: ABIE41_RS04140 - hypothetical protein, at 855,355 to 855,798
_RS04140
ABIE41_RS04145: ABIE41_RS04145 - methyl-accepting chemotaxis protein, at 856,040 to 857,782
_RS04145
ABIE41_RS04150: ABIE41_RS04150 - methyl-accepting chemotaxis protein, at 857,901 to 860,255
_RS04150
Position (kb) 856
857
858 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 855.526 kb on + strand, within ABIE41_RS04140 at 855.526 kb on + strand, within ABIE41_RS04140 at 855.526 kb on + strand, within ABIE41_RS04140 at 855.527 kb on - strand, within ABIE41_RS04140 at 855.527 kb on - strand, within ABIE41_RS04140 at 855.527 kb on - strand, within ABIE41_RS04140 at 855.527 kb on - strand, within ABIE41_RS04140 at 855.527 kb on - strand, within ABIE41_RS04140 at 855.527 kb on - strand, within ABIE41_RS04140 at 855.529 kb on - strand, within ABIE41_RS04140 at 855.886 kb on + strand at 855.886 kb on + strand at 855.887 kb on - strand at 855.887 kb on - strand at 855.887 kb on - strand at 855.888 kb on + strand at 855.889 kb on - strand at 856.023 kb on - strand at 856.023 kb on - strand at 856.054 kb on + strand at 856.055 kb on - strand at 856.055 kb on - strand at 856.990 kb on + strand, within ABIE41_RS04145 at 856.991 kb on - strand, within ABIE41_RS04145 at 856.991 kb on - strand, within ABIE41_RS04145 at 857.800 kb on - strand at 857.824 kb on + strand at 857.824 kb on + strand at 857.825 kb on - strand at 857.825 kb on - strand at 857.825 kb on - strand at 857.825 kb on - strand at 857.825 kb on - strand at 857.825 kb on - strand at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.273 kb on + strand, within ABIE41_RS04150 at 858.360 kb on - strand, within ABIE41_RS04150 at 858.495 kb on + strand, within ABIE41_RS04150 at 858.495 kb on + strand, within ABIE41_RS04150 at 858.496 kb on - strand, within ABIE41_RS04150
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM remove 855,526 + ABIE41_RS04140 0.39 -1.7 855,526 + ABIE41_RS04140 0.39 +0.5 855,526 + ABIE41_RS04140 0.39 +0.3 855,527 - ABIE41_RS04140 0.39 -0.3 855,527 - ABIE41_RS04140 0.39 +1.5 855,527 - ABIE41_RS04140 0.39 +0.8 855,527 - ABIE41_RS04140 0.39 +0.7 855,527 - ABIE41_RS04140 0.39 +0.8 855,527 - ABIE41_RS04140 0.39 -0.1 855,529 - ABIE41_RS04140 0.39 +2.0 855,886 + +0.9 855,886 + -2.0 855,887 - -0.7 855,887 - -1.0 855,887 - +0.0 855,888 + -1.2 855,889 - -0.0 856,023 - +0.2 856,023 - -1.0 856,054 + -0.2 856,055 - +0.8 856,055 - +0.6 856,990 + ABIE41_RS04145 0.55 -0.7 856,991 - ABIE41_RS04145 0.55 +1.0 856,991 - ABIE41_RS04145 0.55 -0.0 857,800 - +0.0 857,824 + -0.4 857,824 + -1.4 857,825 - -0.4 857,825 - -1.3 857,825 - +0.3 857,825 - +0.4 857,825 - +0.3 857,825 - -0.0 858,162 + ABIE41_RS04150 0.11 -0.8 858,162 + ABIE41_RS04150 0.11 +0.9 858,162 + ABIE41_RS04150 0.11 +2.2 858,162 + ABIE41_RS04150 0.11 -1.2 858,162 + ABIE41_RS04150 0.11 -1.4 858,162 + ABIE41_RS04150 0.11 +0.4 858,162 + ABIE41_RS04150 0.11 -0.3 858,162 + ABIE41_RS04150 0.11 -0.3 858,162 + ABIE41_RS04150 0.11 -2.9 858,162 + ABIE41_RS04150 0.11 +1.2 858,163 - ABIE41_RS04150 0.11 -1.1 858,163 - ABIE41_RS04150 0.11 +0.7 858,163 - ABIE41_RS04150 0.11 -1.5 858,163 - ABIE41_RS04150 0.11 -0.0 858,163 - ABIE41_RS04150 0.11 +0.0 858,163 - ABIE41_RS04150 0.11 +0.0 858,163 - ABIE41_RS04150 0.11 -0.5 858,163 - ABIE41_RS04150 0.11 +0.4 858,163 - ABIE41_RS04150 0.11 -0.6 858,163 - ABIE41_RS04150 0.11 -0.0 858,163 - ABIE41_RS04150 0.11 +0.1 858,163 - ABIE41_RS04150 0.11 +0.1 858,273 + ABIE41_RS04150 0.16 +0.8 858,360 - ABIE41_RS04150 0.19 +1.4 858,495 + ABIE41_RS04150 0.25 -0.0 858,495 + ABIE41_RS04150 0.25 +0.1 858,496 - ABIE41_RS04150 0.25 +0.3
Or see this region's nucleotide sequence