Strain Fitness in Pseudomonas sp. RS175 around PFR28_04768

Experiment: Xanthosine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xanthosine (C)
5,426,711	-		PFR28_04766	0.66	-0.4
5,426,711	-		PFR28_04766	0.66	-0.2
5,426,711	-		PFR28_04766	0.66	-0.9
5,426,730	+		PFR28_04766	0.68	-1.0
5,426,731	-		PFR28_04766	0.68	-0.2
5,426,731	-		PFR28_04766	0.68	-0.7
5,426,842	+		PFR28_04766	0.76	-0.2
5,426,842	+		PFR28_04766	0.76	-0.4
5,426,843	-		PFR28_04766	0.76	+0.2
5,426,891	-		PFR28_04766	0.80	-1.7
5,426,891	-		PFR28_04766	0.80	+1.8
5,426,891	-		PFR28_04766	0.80	+0.1
5,426,922	+		PFR28_04766	0.82	+0.2
5,426,923	-		PFR28_04766	0.82	-0.4
5,426,923	-		PFR28_04766	0.82	+0.2
5,427,010	+		PFR28_04766	0.88	+1.0
5,427,010	+		PFR28_04766	0.88	-1.8
5,427,010	+		PFR28_04766	0.88	-0.3
5,427,010	+		PFR28_04766	0.88	-0.4
5,427,011	-		PFR28_04766	0.88	+1.1
5,427,011	-		PFR28_04766	0.88	+0.5
5,427,011	-		PFR28_04766	0.88	+0.2
5,427,118	+				+0.4
5,427,118	+				+2.3
5,427,118	+				+1.2
5,427,118	+				-2.4
5,427,119	-				+0.5
5,427,119	-				+1.7
5,427,279	+		PFR28_04767	0.22	-0.5
5,427,279	+		PFR28_04767	0.22	+0.3
5,427,280	-		PFR28_04767	0.22	+0.9
5,427,280	-		PFR28_04767	0.22	+1.4
5,427,330	+		PFR28_04767	0.31	+0.0
5,427,331	-		PFR28_04767	0.32	-1.1
5,427,469	-		PFR28_04767	0.58	+0.2
5,427,477	+		PFR28_04767	0.59	+0.6
5,427,477	+		PFR28_04767	0.59	+0.1
5,427,478	-		PFR28_04767	0.60	+0.2
5,427,478	-		PFR28_04767	0.60	+0.5
5,427,488	+		PFR28_04767	0.62	+0.5
5,427,492	+		PFR28_04767	0.62	+2.5
5,427,492	+		PFR28_04767	0.62	-3.1
5,427,531	+		PFR28_04767	0.70	-0.0
5,427,531	+		PFR28_04767	0.70	-1.8
5,427,531	+		PFR28_04767	0.70	-0.4
5,427,531	+		PFR28_04767	0.70	-2.4
5,427,531	+		PFR28_04767	0.70	-0.8
5,427,531	+		PFR28_04767	0.70	-1.7
5,427,531	+		PFR28_04767	0.70	+1.5
5,427,531	+		PFR28_04767	0.70	+1.3
5,427,531	+		PFR28_04767	0.70	+0.4
5,427,532	-		PFR28_04767	0.70	-1.6
5,427,532	-		PFR28_04767	0.70	-1.7
5,427,532	-		PFR28_04767	0.70	-0.7
5,427,532	-		PFR28_04767	0.70	+0.9
5,427,532	-		PFR28_04767	0.70	-0.5
5,427,532	-		PFR28_04767	0.70	+0.1
5,427,532	-		PFR28_04767	0.70	-2.2
5,427,537	+		PFR28_04767	0.71	-0.1
5,427,537	+		PFR28_04767	0.71	-0.2
5,427,538	-		PFR28_04767	0.71	-0.8
5,427,538	-		PFR28_04767	0.71	-1.7
5,427,538	-		PFR28_04767	0.71	+1.6
5,427,538	-		PFR28_04767	0.71	-1.1
5,427,538	-		PFR28_04767	0.71	+0.4
5,427,538	-		PFR28_04767	0.71	-2.3
5,427,538	-		PFR28_04767	0.71	+0.8
5,427,538	-		PFR28_04767	0.71	+0.2
5,427,538	-		PFR28_04767	0.71	+0.2
5,427,538	-		PFR28_04767	0.71	-0.3
5,427,538	-		PFR28_04767	0.71	-0.0
5,427,538	-		PFR28_04767	0.71	+0.3
5,427,538	-		PFR28_04767	0.71	-1.4
5,427,579	+		PFR28_04767	0.79	-1.3
5,427,691	+				-0.6
5,427,691	+				+1.3
5,427,692	-				+2.1
5,427,692	-				-1.1
5,427,709	-				+1.2
5,427,709	-				+0.4
5,427,739	+				+0.7
5,427,750	-				-2.5
5,427,750	-				-0.4
5,427,824	+				+1.5
5,427,824	+				+1.3
5,427,825	-				-1.1
5,427,839	+				+0.3
5,427,839	+				+0.7
5,427,981	-		PFR28_04768	0.13	+0.5
5,428,019	+		PFR28_04768	0.15	-0.9
5,428,019	+		PFR28_04768	0.15	+0.7
5,428,019	+		PFR28_04768	0.15	-1.0
5,428,019	+		PFR28_04768	0.15	+0.2
5,428,019	+		PFR28_04768	0.15	+0.2
5,428,020	-		PFR28_04768	0.15	-1.5
5,428,020	-		PFR28_04768	0.15	-0.4
5,428,020	-		PFR28_04768	0.15	-1.1
5,428,020	-		PFR28_04768	0.15	+0.7
5,428,020	-		PFR28_04768	0.15	+1.4
5,428,105	-		PFR28_04768	0.19	-0.3
5,428,106	+		PFR28_04768	0.19	-1.7
5,428,106	+		PFR28_04768	0.19	+1.0
5,428,107	-		PFR28_04768	0.19	-2.8
5,428,107	-		PFR28_04768	0.19	-0.0
5,428,136	+		PFR28_04768	0.20	+0.9
5,428,212	-		PFR28_04768	0.24	-1.3
5,428,212	-		PFR28_04768	0.24	-0.7
5,428,370	+		PFR28_04768	0.31	+0.4
5,428,399	+		PFR28_04768	0.32	-0.7
5,428,399	+		PFR28_04768	0.32	-0.7
5,428,399	+		PFR28_04768	0.32	+0.3
5,428,400	-		PFR28_04768	0.32	-1.6
5,428,436	+		PFR28_04768	0.34	-1.3
5,428,436	+		PFR28_04768	0.34	-0.8
5,428,437	-		PFR28_04768	0.34	-0.1
5,428,437	-		PFR28_04768	0.34	+0.7
5,428,493	+		PFR28_04768	0.36	+2.1
5,428,493	+		PFR28_04768	0.36	-1.2
5,428,493	+		PFR28_04768	0.36	+2.7
5,428,494	-		PFR28_04768	0.36	+1.0
5,428,494	-		PFR28_04768	0.36	+0.8
5,428,494	-		PFR28_04768	0.36	-1.1
5,428,521	+		PFR28_04768	0.38	+1.6
5,428,521	+		PFR28_04768	0.38	-2.3
5,428,521	+		PFR28_04768	0.38	-3.0
5,428,522	-		PFR28_04768	0.38	-0.1
5,428,522	-		PFR28_04768	0.38	+0.3
5,428,522	-		PFR28_04768	0.38	-0.5
5,428,562	+		PFR28_04768	0.39	-0.3
5,428,562	+		PFR28_04768	0.39	+0.4
5,428,562	+		PFR28_04768	0.39	-2.2
5,428,562	+		PFR28_04768	0.39	-1.4
5,428,563	-		PFR28_04768	0.40	+0.2
5,428,563	-		PFR28_04768	0.40	-0.7
5,428,616	+		PFR28_04768	0.42	-2.8
5,428,616	+		PFR28_04768	0.42	+1.2
5,428,616	+		PFR28_04768	0.42	-0.1
5,428,616	+		PFR28_04768	0.42	+0.8
5,428,616	+		PFR28_04768	0.42	-0.2
5,428,616	+		PFR28_04768	0.42	-1.8
5,428,617	-		PFR28_04768	0.42	+1.9
5,428,617	-		PFR28_04768	0.42	+0.4
5,428,617	-		PFR28_04768	0.42	-0.2
5,428,617	-		PFR28_04768	0.42	-0.7
5,428,617	-		PFR28_04768	0.42	-0.0
5,428,617	-		PFR28_04768	0.42	+1.1
5,428,617	-		PFR28_04768	0.42	+0.6
5,428,653	+		PFR28_04768	0.44	+0.5
5,428,653	+		PFR28_04768	0.44	+1.2
5,428,653	+		PFR28_04768	0.44	-2.3
5,428,653	+		PFR28_04768	0.44	+0.5
5,428,653	+		PFR28_04768	0.44	-0.1
5,428,653	+		PFR28_04768	0.44	-0.7
5,428,653	+		PFR28_04768	0.44	+1.0
5,428,654	-		PFR28_04768	0.44	-0.1
5,428,654	-		PFR28_04768	0.44	+1.6
5,428,721	-		PFR28_04768	0.47	-1.8
5,428,742	+		PFR28_04768	0.48	+2.2
5,428,743	-		PFR28_04768	0.48	+0.8
5,428,743	-		PFR28_04768	0.48	+0.6
5,428,911	-		PFR28_04768	0.55	+0.1
5,429,007	-		PFR28_04768	0.60	+0.8
5,429,111	+		PFR28_04768	0.64	-0.1
5,429,111	+		PFR28_04768	0.64	-2.0
5,429,111	+		PFR28_04768	0.64	+0.9
5,429,111	+		PFR28_04768	0.64	+0.5
5,429,111	+		PFR28_04768	0.64	-1.1
5,429,111	+		PFR28_04768	0.64	+0.9
5,429,112	-		PFR28_04768	0.64	+0.7
5,429,112	-		PFR28_04768	0.64	-0.5
5,429,112	-		PFR28_04768	0.64	-0.1
5,429,112	-		PFR28_04768	0.64	-0.6
5,429,132	+		PFR28_04768	0.65	-0.3
5,429,172	-		PFR28_04768	0.67	-2.8
5,429,186	+		PFR28_04768	0.68	+0.7
5,429,186	+		PFR28_04768	0.68	-0.0
5,429,186	+		PFR28_04768	0.68	+1.2
5,429,186	+		PFR28_04768	0.68	-1.5
5,429,186	+		PFR28_04768	0.68	-0.2
5,429,186	+		PFR28_04768	0.68	+3.1
5,429,187	-		PFR28_04768	0.68	-0.1
5,429,187	-		PFR28_04768	0.68	+1.0
5,429,187	-		PFR28_04768	0.68	+0.2
5,429,187	-		PFR28_04768	0.68	-1.7
5,429,187	-		PFR28_04768	0.68	-2.1
5,429,233	+		PFR28_04768	0.70	+0.0
5,429,234	-		PFR28_04768	0.70	-1.2
5,429,294	+		PFR28_04768	0.72	-2.1
5,429,308	+		PFR28_04768	0.73	-0.8
5,429,308	+		PFR28_04768	0.73	-1.4
5,429,308	+		PFR28_04768	0.73	-1.1
5,429,308	+		PFR28_04768	0.73	-0.4
5,429,308	+		PFR28_04768	0.73	+1.8
5,429,309	-		PFR28_04768	0.73	+0.1
5,429,309	-		PFR28_04768	0.73	-0.5
5,429,309	-		PFR28_04768	0.73	-3.7
5,429,341	+		PFR28_04768	0.75	-0.5
5,429,342	-		PFR28_04768	0.75	-0.3
5,429,342	-		PFR28_04768	0.75	-0.6
5,429,342	-		PFR28_04768	0.75	+0.2
5,429,342	-		PFR28_04768	0.75	+0.8
5,429,346	-		PFR28_04768	0.75	+1.7
5,429,346	-		PFR28_04768	0.75	+0.5
5,429,346	-		PFR28_04768	0.75	-2.3
5,429,346	-		PFR28_04768	0.75	-0.7
5,429,346	-		PFR28_04768	0.75	-1.5
5,429,346	-		PFR28_04768	0.75	+0.7
5,429,609	+		PFR28_04768	0.87	-1.9
5,429,610	-		PFR28_04768	0.87	-0.1
5,429,622	+		PFR28_04768	0.87	+0.7
5,429,622	+		PFR28_04768	0.87	-0.3
5,429,623	-		PFR28_04768	0.87	-0.5
5,429,623	-		PFR28_04768	0.87	+0.1
5,429,685	-				+0.4
5,429,693	+				+0.7
5,429,693	+				+1.9
5,429,693	+				-0.5
5,429,693	+				+1.1
5,429,693	+				-1.6
5,429,693	+				-0.5
5,429,694	-				-0.7
5,429,694	-				-1.3
5,429,694	-				-0.4
5,429,694	-				-0.2
5,429,694	-				+1.8
5,429,694	-				+1.3
5,429,694	-				+0.0
5,429,903	+				+0.0
5,429,925	-				+1.2
5,430,218	+		PFR28_04769	0.32	+1.7
5,430,219	-		PFR28_04769	0.32	-0.1
5,430,219	-		PFR28_04769	0.32	-2.3
5,430,219	-		PFR28_04769	0.32	+0.4
5,430,219	-		PFR28_04769	0.32	-0.4
5,430,219	-		PFR28_04769	0.32	-1.1
5,430,222	-		PFR28_04769	0.33	+0.3
5,430,283	+		PFR28_04769	0.45	-1.3
5,430,284	-		PFR28_04769	0.45	-0.3
5,430,284	-		PFR28_04769	0.45	-0.0
5,430,284	-		PFR28_04769	0.45	+0.3
5,430,284	-		PFR28_04769	0.45	+2.1
5,430,340	+		PFR28_04769	0.55	+0.5
5,430,340	+		PFR28_04769	0.55	+1.2
5,430,341	-		PFR28_04769	0.56	+1.1
5,430,380	+		PFR28_04769	0.63	-0.8
5,430,381	-		PFR28_04769	0.63	+1.2
5,430,533	+				-0.7
5,430,533	+				-0.2
5,430,533	+				-0.6
5,430,533	+				+0.9
5,430,533	+				-1.2
5,430,534	-				-0.9
5,430,534	-				+0.2
5,430,534	-				+0.4
5,430,534	-				-0.1
5,430,534	-				-0.6
5,430,534	-				-0.0
5,430,534	-				-0.7
5,430,542	+				-0.2
5,430,543	-				-0.9
5,430,543	-				-0.7
5,430,636	+				-0.6
5,430,684	+				+0.2
5,430,684	+				+0.2
5,430,685	-				-1.1
5,430,685	-				+0.1
5,430,685	-				+0.3
5,430,707	+				-1.3
5,430,707	+				-1.4
5,430,729	+				+2.7
5,430,730	-				-0.6
5,430,730	-				+1.3
5,430,737	-		PFR28_04770	0.11	-2.2
5,430,737	-		PFR28_04770	0.11	-2.4
5,430,818	+		PFR28_04770	0.23	-1.3
5,430,818	+		PFR28_04770	0.23	+0.6
5,430,819	-		PFR28_04770	0.23	-1.0
5,430,819	-		PFR28_04770	0.23	-1.8