Experiment: R2A with 3-octanone 2.65516666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20445 and ABIE41_RS20450 are separated by 174 nucleotides ABIE41_RS20450 and ABIE41_RS20455 are separated by 80 nucleotides ABIE41_RS20455 and ABIE41_RS20460 are separated by 139 nucleotides
ABIE41_RS20445: ABIE41_RS20445 - GNAT family N-acetyltransferase, at 4,202,792 to 4,203,307
_RS20445
ABIE41_RS20450: ABIE41_RS20450 - haloacid dehalogenase type II, at 4,203,482 to 4,204,150
_RS20450
ABIE41_RS20455: ABIE41_RS20455 - Lrp/AsnC family transcriptional regulator, at 4,204,231 to 4,204,722
_RS20455
ABIE41_RS20460: ABIE41_RS20460 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 4,204,862 to 4,206,190
_RS20460
Position (kb) 4204
4205 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4203.239 kb on + strand, within ABIE41_RS20445 at 4203.240 kb on - strand, within ABIE41_RS20445 at 4203.240 kb on - strand, within ABIE41_RS20445 at 4203.240 kb on - strand, within ABIE41_RS20445 at 4203.240 kb on - strand, within ABIE41_RS20445 at 4203.429 kb on + strand at 4203.503 kb on + strand at 4203.504 kb on - strand at 4203.504 kb on - strand at 4203.504 kb on - strand at 4203.537 kb on - strand at 4203.570 kb on - strand, within ABIE41_RS20450 at 4203.627 kb on - strand, within ABIE41_RS20450 at 4203.662 kb on + strand, within ABIE41_RS20450 at 4203.662 kb on + strand, within ABIE41_RS20450 at 4203.663 kb on - strand, within ABIE41_RS20450 at 4203.677 kb on + strand, within ABIE41_RS20450 at 4203.677 kb on + strand, within ABIE41_RS20450 at 4203.677 kb on + strand, within ABIE41_RS20450 at 4203.678 kb on - strand, within ABIE41_RS20450 at 4203.678 kb on - strand, within ABIE41_RS20450 at 4203.746 kb on + strand, within ABIE41_RS20450 at 4203.746 kb on + strand, within ABIE41_RS20450 at 4203.747 kb on - strand, within ABIE41_RS20450 at 4203.900 kb on - strand, within ABIE41_RS20450 at 4203.923 kb on + strand, within ABIE41_RS20450 at 4203.924 kb on - strand, within ABIE41_RS20450 at 4203.924 kb on - strand, within ABIE41_RS20450 at 4203.950 kb on + strand, within ABIE41_RS20450 at 4203.950 kb on + strand, within ABIE41_RS20450 at 4203.951 kb on - strand, within ABIE41_RS20450 at 4204.013 kb on + strand, within ABIE41_RS20450 at 4204.094 kb on + strand at 4204.094 kb on + strand at 4204.094 kb on + strand at 4204.094 kb on + strand at 4204.094 kb on + strand at 4204.094 kb on + strand at 4204.095 kb on - strand at 4204.095 kb on - strand at 4204.394 kb on + strand, within ABIE41_RS20455 at 4204.395 kb on - strand, within ABIE41_RS20455 at 4204.395 kb on - strand, within ABIE41_RS20455 at 4204.418 kb on + strand, within ABIE41_RS20455 at 4204.419 kb on - strand, within ABIE41_RS20455 at 4204.419 kb on - strand, within ABIE41_RS20455 at 4204.419 kb on - strand, within ABIE41_RS20455 at 4204.419 kb on - strand, within ABIE41_RS20455 at 4204.625 kb on - strand, within ABIE41_RS20455 at 4204.958 kb on - strand at 4205.135 kb on + strand, within ABIE41_RS20460 at 4205.135 kb on + strand, within ABIE41_RS20460 at 4205.136 kb on - strand, within ABIE41_RS20460 at 4205.136 kb on - strand, within ABIE41_RS20460 at 4205.136 kb on - strand, within ABIE41_RS20460 at 4205.582 kb on - strand, within ABIE41_RS20460
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM remove 4,203,239 + ABIE41_RS20445 0.87 -0.4 4,203,240 - ABIE41_RS20445 0.87 -1.3 4,203,240 - ABIE41_RS20445 0.87 +0.9 4,203,240 - ABIE41_RS20445 0.87 +0.3 4,203,240 - ABIE41_RS20445 0.87 -1.9 4,203,429 + +0.0 4,203,503 + +0.1 4,203,504 - +0.6 4,203,504 - -0.8 4,203,504 - -1.1 4,203,537 - -0.4 4,203,570 - ABIE41_RS20450 0.13 +0.5 4,203,627 - ABIE41_RS20450 0.22 +0.5 4,203,662 + ABIE41_RS20450 0.27 -0.7 4,203,662 + ABIE41_RS20450 0.27 +0.9 4,203,663 - ABIE41_RS20450 0.27 +2.0 4,203,677 + ABIE41_RS20450 0.29 -0.5 4,203,677 + ABIE41_RS20450 0.29 -1.6 4,203,677 + ABIE41_RS20450 0.29 +0.8 4,203,678 - ABIE41_RS20450 0.29 -0.5 4,203,678 - ABIE41_RS20450 0.29 +0.1 4,203,746 + ABIE41_RS20450 0.39 +0.3 4,203,746 + ABIE41_RS20450 0.39 +0.0 4,203,747 - ABIE41_RS20450 0.40 -0.1 4,203,900 - ABIE41_RS20450 0.62 +1.7 4,203,923 + ABIE41_RS20450 0.66 +0.3 4,203,924 - ABIE41_RS20450 0.66 -0.3 4,203,924 - ABIE41_RS20450 0.66 +0.8 4,203,950 + ABIE41_RS20450 0.70 -0.5 4,203,950 + ABIE41_RS20450 0.70 -0.3 4,203,951 - ABIE41_RS20450 0.70 -0.2 4,204,013 + ABIE41_RS20450 0.79 +0.2 4,204,094 + -1.1 4,204,094 + +1.2 4,204,094 + +0.2 4,204,094 + -0.0 4,204,094 + +1.3 4,204,094 + -0.2 4,204,095 - +0.0 4,204,095 - -1.4 4,204,394 + ABIE41_RS20455 0.33 -1.3 4,204,395 - ABIE41_RS20455 0.33 +0.8 4,204,395 - ABIE41_RS20455 0.33 +0.0 4,204,418 + ABIE41_RS20455 0.38 +0.3 4,204,419 - ABIE41_RS20455 0.38 -0.7 4,204,419 - ABIE41_RS20455 0.38 -1.9 4,204,419 - ABIE41_RS20455 0.38 +1.0 4,204,419 - ABIE41_RS20455 0.38 -0.3 4,204,625 - ABIE41_RS20455 0.80 +0.1 4,204,958 - +0.1 4,205,135 + ABIE41_RS20460 0.21 +0.8 4,205,135 + ABIE41_RS20460 0.21 -1.0 4,205,136 - ABIE41_RS20460 0.21 -0.3 4,205,136 - ABIE41_RS20460 0.21 -1.4 4,205,136 - ABIE41_RS20460 0.21 +1.5 4,205,582 - ABIE41_RS20460 0.54 -0.9
Or see this region's nucleotide sequence