Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16525

Experiment: R2A with 3-octanone 2.65516666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16520 and ABIE41_RS16525 are separated by 42 nucleotidesABIE41_RS16525 and ABIE41_RS16530 overlap by 4 nucleotidesABIE41_RS16530 and ABIE41_RS16535 are separated by 20 nucleotides ABIE41_RS16520: ABIE41_RS16520 - ABC transporter substrate-binding protein, at 3,398,946 to 3,400,121 _RS16520 ABIE41_RS16525: ABIE41_RS16525 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase, at 3,400,164 to 3,400,847 _RS16525 ABIE41_RS16530: ABIE41_RS16530 - PIG-L deacetylase family protein, at 3,400,844 to 3,401,569 _RS16530 ABIE41_RS16535: ABIE41_RS16535 - 4-oxalomesaconate tautomerase, at 3,401,590 to 3,402,708 _RS16535 Position (kb) 3400 3401Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3399.295 kb on + strand, within ABIE41_RS16520at 3399.295 kb on + strand, within ABIE41_RS16520at 3399.296 kb on - strand, within ABIE41_RS16520at 3399.347 kb on + strand, within ABIE41_RS16520at 3399.608 kb on - strand, within ABIE41_RS16520at 3400.219 kb on + strandat 3400.219 kb on + strandat 3400.219 kb on + strandat 3400.219 kb on + strandat 3400.219 kb on + strandat 3400.219 kb on + strandat 3400.219 kb on + strandat 3400.219 kb on + strandat 3400.219 kb on + strandat 3400.219 kb on + strandat 3400.219 kb on + strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.220 kb on - strandat 3400.256 kb on + strand, within ABIE41_RS16525at 3400.711 kb on + strand, within ABIE41_RS16525at 3400.711 kb on + strand, within ABIE41_RS16525at 3400.712 kb on - strand, within ABIE41_RS16525at 3400.712 kb on - strand, within ABIE41_RS16525at 3400.712 kb on - strand, within ABIE41_RS16525at 3400.726 kb on + strand, within ABIE41_RS16525at 3400.726 kb on + strand, within ABIE41_RS16525at 3400.800 kb on - strandat 3400.884 kb on + strandat 3400.897 kb on - strandat 3400.959 kb on + strand, within ABIE41_RS16530at 3400.959 kb on + strand, within ABIE41_RS16530at 3400.959 kb on + strand, within ABIE41_RS16530at 3400.959 kb on + strand, within ABIE41_RS16530at 3400.960 kb on - strand, within ABIE41_RS16530at 3400.960 kb on - strand, within ABIE41_RS16530at 3400.960 kb on - strand, within ABIE41_RS16530at 3400.960 kb on - strand, within ABIE41_RS16530at 3400.960 kb on - strand, within ABIE41_RS16530at 3400.960 kb on - strand, within ABIE41_RS16530at 3400.962 kb on + strand, within ABIE41_RS16530at 3400.962 kb on + strand, within ABIE41_RS16530at 3400.962 kb on + strand, within ABIE41_RS16530at 3400.963 kb on - strand, within ABIE41_RS16530at 3400.963 kb on - strand, within ABIE41_RS16530at 3401.200 kb on + strand, within ABIE41_RS16530at 3401.200 kb on + strand, within ABIE41_RS16530at 3401.200 kb on + strand, within ABIE41_RS16530at 3401.200 kb on + strand, within ABIE41_RS16530at 3401.201 kb on - strand, within ABIE41_RS16530at 3401.201 kb on - strand, within ABIE41_RS16530at 3401.202 kb on + strand, within ABIE41_RS16530at 3401.202 kb on + strand, within ABIE41_RS16530at 3401.202 kb on + strand, within ABIE41_RS16530at 3401.202 kb on + strand, within ABIE41_RS16530at 3401.203 kb on - strand, within ABIE41_RS16530at 3401.203 kb on - strand, within ABIE41_RS16530at 3401.203 kb on - strand, within ABIE41_RS16530at 3401.203 kb on - strand, within ABIE41_RS16530at 3401.204 kb on - strand, within ABIE41_RS16530

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM
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3,399,295 + ABIE41_RS16520 0.30 +0.1
3,399,295 + ABIE41_RS16520 0.30 -0.7
3,399,296 - ABIE41_RS16520 0.30 -0.3
3,399,347 + ABIE41_RS16520 0.34 +0.0
3,399,608 - ABIE41_RS16520 0.56 -1.1
3,400,219 + -1.3
3,400,219 + +0.3
3,400,219 + -0.3
3,400,219 + -0.8
3,400,219 + +0.3
3,400,219 + +0.1
3,400,219 + +0.3
3,400,219 + +0.0
3,400,219 + -0.6
3,400,219 + +0.0
3,400,219 + -0.9
3,400,220 - +1.0
3,400,220 - -0.2
3,400,220 - -0.4
3,400,220 - -0.6
3,400,220 - +0.2
3,400,220 - -0.1
3,400,220 - +0.4
3,400,220 - +0.5
3,400,220 - -0.1
3,400,220 - -0.0
3,400,220 - +0.7
3,400,220 - -0.3
3,400,220 - +0.0
3,400,220 - -0.1
3,400,220 - +0.1
3,400,220 - +0.2
3,400,220 - +0.9
3,400,220 - -0.4
3,400,220 - +0.0
3,400,220 - +0.2
3,400,220 - +2.0
3,400,220 - +0.7
3,400,220 - +1.4
3,400,256 + ABIE41_RS16525 0.13 -0.1
3,400,711 + ABIE41_RS16525 0.80 -1.0
3,400,711 + ABIE41_RS16525 0.80 +0.3
3,400,712 - ABIE41_RS16525 0.80 -2.1
3,400,712 - ABIE41_RS16525 0.80 +0.1
3,400,712 - ABIE41_RS16525 0.80 -2.8
3,400,726 + ABIE41_RS16525 0.82 -0.4
3,400,726 + ABIE41_RS16525 0.82 -0.1
3,400,800 - -0.1
3,400,884 + +0.7
3,400,897 - +0.4
3,400,959 + ABIE41_RS16530 0.16 +2.0
3,400,959 + ABIE41_RS16530 0.16 -2.5
3,400,959 + ABIE41_RS16530 0.16 +0.9
3,400,959 + ABIE41_RS16530 0.16 +0.2
3,400,960 - ABIE41_RS16530 0.16 -0.9
3,400,960 - ABIE41_RS16530 0.16 +1.0
3,400,960 - ABIE41_RS16530 0.16 +2.1
3,400,960 - ABIE41_RS16530 0.16 +1.3
3,400,960 - ABIE41_RS16530 0.16 +0.4
3,400,960 - ABIE41_RS16530 0.16 -1.8
3,400,962 + ABIE41_RS16530 0.16 -0.2
3,400,962 + ABIE41_RS16530 0.16 +2.0
3,400,962 + ABIE41_RS16530 0.16 -0.5
3,400,963 - ABIE41_RS16530 0.16 -0.4
3,400,963 - ABIE41_RS16530 0.16 +0.9
3,401,200 + ABIE41_RS16530 0.49 +0.9
3,401,200 + ABIE41_RS16530 0.49 +0.5
3,401,200 + ABIE41_RS16530 0.49 +0.1
3,401,200 + ABIE41_RS16530 0.49 +3.4
3,401,201 - ABIE41_RS16530 0.49 -0.7
3,401,201 - ABIE41_RS16530 0.49 +0.0
3,401,202 + ABIE41_RS16530 0.49 -0.9
3,401,202 + ABIE41_RS16530 0.49 +0.4
3,401,202 + ABIE41_RS16530 0.49 +0.5
3,401,202 + ABIE41_RS16530 0.49 +0.5
3,401,203 - ABIE41_RS16530 0.49 -0.8
3,401,203 - ABIE41_RS16530 0.49 +2.4
3,401,203 - ABIE41_RS16530 0.49 -0.1
3,401,203 - ABIE41_RS16530 0.49 +0.6
3,401,204 - ABIE41_RS16530 0.50 -0.5

Or see this region's nucleotide sequence