Experiment: R2A with 3-octanone 2.65516666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS16520 and ABIE41_RS16525 are separated by 42 nucleotides ABIE41_RS16525 and ABIE41_RS16530 overlap by 4 nucleotides ABIE41_RS16530 and ABIE41_RS16535 are separated by 20 nucleotides
ABIE41_RS16520: ABIE41_RS16520 - ABC transporter substrate-binding protein, at 3,398,946 to 3,400,121
_RS16520
ABIE41_RS16525: ABIE41_RS16525 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase, at 3,400,164 to 3,400,847
_RS16525
ABIE41_RS16530: ABIE41_RS16530 - PIG-L deacetylase family protein, at 3,400,844 to 3,401,569
_RS16530
ABIE41_RS16535: ABIE41_RS16535 - 4-oxalomesaconate tautomerase, at 3,401,590 to 3,402,708
_RS16535
Position (kb)
3400
3401 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3399.295 kb on + strand, within ABIE41_RS16520 at 3399.295 kb on + strand, within ABIE41_RS16520 at 3399.296 kb on - strand, within ABIE41_RS16520 at 3399.347 kb on + strand, within ABIE41_RS16520 at 3399.608 kb on - strand, within ABIE41_RS16520 at 3400.219 kb on + strand at 3400.219 kb on + strand at 3400.219 kb on + strand at 3400.219 kb on + strand at 3400.219 kb on + strand at 3400.219 kb on + strand at 3400.219 kb on + strand at 3400.219 kb on + strand at 3400.219 kb on + strand at 3400.219 kb on + strand at 3400.219 kb on + strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.220 kb on - strand at 3400.256 kb on + strand, within ABIE41_RS16525 at 3400.711 kb on + strand, within ABIE41_RS16525 at 3400.711 kb on + strand, within ABIE41_RS16525 at 3400.712 kb on - strand, within ABIE41_RS16525 at 3400.712 kb on - strand, within ABIE41_RS16525 at 3400.712 kb on - strand, within ABIE41_RS16525 at 3400.726 kb on + strand, within ABIE41_RS16525 at 3400.726 kb on + strand, within ABIE41_RS16525 at 3400.800 kb on - strand at 3400.884 kb on + strand at 3400.897 kb on - strand at 3400.959 kb on + strand, within ABIE41_RS16530 at 3400.959 kb on + strand, within ABIE41_RS16530 at 3400.959 kb on + strand, within ABIE41_RS16530 at 3400.959 kb on + strand, within ABIE41_RS16530 at 3400.960 kb on - strand, within ABIE41_RS16530 at 3400.960 kb on - strand, within ABIE41_RS16530 at 3400.960 kb on - strand, within ABIE41_RS16530 at 3400.960 kb on - strand, within ABIE41_RS16530 at 3400.960 kb on - strand, within ABIE41_RS16530 at 3400.960 kb on - strand, within ABIE41_RS16530 at 3400.962 kb on + strand, within ABIE41_RS16530 at 3400.962 kb on + strand, within ABIE41_RS16530 at 3400.962 kb on + strand, within ABIE41_RS16530 at 3400.963 kb on - strand, within ABIE41_RS16530 at 3400.963 kb on - strand, within ABIE41_RS16530 at 3401.200 kb on + strand, within ABIE41_RS16530 at 3401.200 kb on + strand, within ABIE41_RS16530 at 3401.200 kb on + strand, within ABIE41_RS16530 at 3401.200 kb on + strand, within ABIE41_RS16530 at 3401.201 kb on - strand, within ABIE41_RS16530 at 3401.201 kb on - strand, within ABIE41_RS16530 at 3401.202 kb on + strand, within ABIE41_RS16530 at 3401.202 kb on + strand, within ABIE41_RS16530 at 3401.202 kb on + strand, within ABIE41_RS16530 at 3401.202 kb on + strand, within ABIE41_RS16530 at 3401.203 kb on - strand, within ABIE41_RS16530 at 3401.203 kb on - strand, within ABIE41_RS16530 at 3401.203 kb on - strand, within ABIE41_RS16530 at 3401.203 kb on - strand, within ABIE41_RS16530 at 3401.204 kb on - strand, within ABIE41_RS16530
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM remove 3,399,295 + ABIE41_RS16520 0.30 +0.1 3,399,295 + ABIE41_RS16520 0.30 -0.7 3,399,296 - ABIE41_RS16520 0.30 -0.3 3,399,347 + ABIE41_RS16520 0.34 +0.0 3,399,608 - ABIE41_RS16520 0.56 -1.1 3,400,219 + -1.3 3,400,219 + +0.3 3,400,219 + -0.3 3,400,219 + -0.8 3,400,219 + +0.3 3,400,219 + +0.1 3,400,219 + +0.3 3,400,219 + +0.0 3,400,219 + -0.6 3,400,219 + +0.0 3,400,219 + -0.9 3,400,220 - +1.0 3,400,220 - -0.2 3,400,220 - -0.4 3,400,220 - -0.6 3,400,220 - +0.2 3,400,220 - -0.1 3,400,220 - +0.4 3,400,220 - +0.5 3,400,220 - -0.1 3,400,220 - -0.0 3,400,220 - +0.7 3,400,220 - -0.3 3,400,220 - +0.0 3,400,220 - -0.1 3,400,220 - +0.1 3,400,220 - +0.2 3,400,220 - +0.9 3,400,220 - -0.4 3,400,220 - +0.0 3,400,220 - +0.2 3,400,220 - +2.0 3,400,220 - +0.7 3,400,220 - +1.4 3,400,256 + ABIE41_RS16525 0.13 -0.1 3,400,711 + ABIE41_RS16525 0.80 -1.0 3,400,711 + ABIE41_RS16525 0.80 +0.3 3,400,712 - ABIE41_RS16525 0.80 -2.1 3,400,712 - ABIE41_RS16525 0.80 +0.1 3,400,712 - ABIE41_RS16525 0.80 -2.8 3,400,726 + ABIE41_RS16525 0.82 -0.4 3,400,726 + ABIE41_RS16525 0.82 -0.1 3,400,800 - -0.1 3,400,884 + +0.7 3,400,897 - +0.4 3,400,959 + ABIE41_RS16530 0.16 +2.0 3,400,959 + ABIE41_RS16530 0.16 -2.5 3,400,959 + ABIE41_RS16530 0.16 +0.9 3,400,959 + ABIE41_RS16530 0.16 +0.2 3,400,960 - ABIE41_RS16530 0.16 -0.9 3,400,960 - ABIE41_RS16530 0.16 +1.0 3,400,960 - ABIE41_RS16530 0.16 +2.1 3,400,960 - ABIE41_RS16530 0.16 +1.3 3,400,960 - ABIE41_RS16530 0.16 +0.4 3,400,960 - ABIE41_RS16530 0.16 -1.8 3,400,962 + ABIE41_RS16530 0.16 -0.2 3,400,962 + ABIE41_RS16530 0.16 +2.0 3,400,962 + ABIE41_RS16530 0.16 -0.5 3,400,963 - ABIE41_RS16530 0.16 -0.4 3,400,963 - ABIE41_RS16530 0.16 +0.9 3,401,200 + ABIE41_RS16530 0.49 +0.9 3,401,200 + ABIE41_RS16530 0.49 +0.5 3,401,200 + ABIE41_RS16530 0.49 +0.1 3,401,200 + ABIE41_RS16530 0.49 +3.4 3,401,201 - ABIE41_RS16530 0.49 -0.7 3,401,201 - ABIE41_RS16530 0.49 +0.0 3,401,202 + ABIE41_RS16530 0.49 -0.9 3,401,202 + ABIE41_RS16530 0.49 +0.4 3,401,202 + ABIE41_RS16530 0.49 +0.5 3,401,202 + ABIE41_RS16530 0.49 +0.5 3,401,203 - ABIE41_RS16530 0.49 -0.8 3,401,203 - ABIE41_RS16530 0.49 +2.4 3,401,203 - ABIE41_RS16530 0.49 -0.1 3,401,203 - ABIE41_RS16530 0.49 +0.6 3,401,204 - ABIE41_RS16530 0.50 -0.5
Or see this region's nucleotide sequence