Experiment: R2A with 3-octanone 2.65516666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS13895 and ABIE41_RS13900 are separated by 9 nucleotides ABIE41_RS13900 and ABIE41_RS13905 are separated by 131 nucleotides
ABIE41_RS13895: ABIE41_RS13895 - PLP-dependent aminotransferase family protein, at 2,851,592 to 2,852,812
_RS13895
ABIE41_RS13900: ABIE41_RS13900 - DUF938 domain-containing protein, at 2,852,822 to 2,853,487
_RS13900
ABIE41_RS13905: ABIE41_RS13905 - hemolysin family protein, at 2,853,619 to 2,854,881
_RS13905
Position (kb)
2852
2853
2854 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2851.982 kb on + strand, within ABIE41_RS13895 at 2851.983 kb on - strand, within ABIE41_RS13895 at 2852.094 kb on - strand, within ABIE41_RS13895 at 2852.094 kb on - strand, within ABIE41_RS13895 at 2852.095 kb on + strand, within ABIE41_RS13895 at 2852.096 kb on - strand, within ABIE41_RS13895 at 2852.096 kb on - strand, within ABIE41_RS13895 at 2852.096 kb on - strand, within ABIE41_RS13895 at 2852.096 kb on - strand, within ABIE41_RS13895 at 2852.096 kb on - strand, within ABIE41_RS13895 at 2852.222 kb on + strand, within ABIE41_RS13895 at 2852.223 kb on - strand, within ABIE41_RS13895 at 2852.223 kb on - strand, within ABIE41_RS13895 at 2852.223 kb on - strand, within ABIE41_RS13895 at 2852.285 kb on + strand, within ABIE41_RS13895 at 2852.285 kb on + strand, within ABIE41_RS13895 at 2852.303 kb on + strand, within ABIE41_RS13895 at 2852.304 kb on - strand, within ABIE41_RS13895 at 2852.304 kb on - strand, within ABIE41_RS13895 at 2852.304 kb on - strand, within ABIE41_RS13895 at 2852.305 kb on + strand, within ABIE41_RS13895 at 2852.305 kb on + strand, within ABIE41_RS13895 at 2852.501 kb on + strand, within ABIE41_RS13895 at 2852.502 kb on - strand, within ABIE41_RS13895 at 2852.572 kb on - strand, within ABIE41_RS13895 at 2852.683 kb on - strand, within ABIE41_RS13895 at 2853.021 kb on + strand, within ABIE41_RS13900 at 2853.022 kb on - strand, within ABIE41_RS13900 at 2853.022 kb on - strand, within ABIE41_RS13900 at 2853.371 kb on - strand, within ABIE41_RS13900 at 2853.548 kb on + strand at 2853.548 kb on + strand at 2853.548 kb on + strand at 2853.549 kb on - strand at 2853.592 kb on + strand at 2853.593 kb on - strand at 2853.937 kb on + strand, within ABIE41_RS13905 at 2853.937 kb on + strand, within ABIE41_RS13905 at 2853.937 kb on + strand, within ABIE41_RS13905 at 2853.938 kb on - strand, within ABIE41_RS13905 at 2853.938 kb on - strand, within ABIE41_RS13905 at 2853.938 kb on - strand, within ABIE41_RS13905 at 2853.938 kb on - strand, within ABIE41_RS13905
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM remove 2,851,982 + ABIE41_RS13895 0.32 +0.3 2,851,983 - ABIE41_RS13895 0.32 +0.1 2,852,094 - ABIE41_RS13895 0.41 -0.3 2,852,094 - ABIE41_RS13895 0.41 -0.8 2,852,095 + ABIE41_RS13895 0.41 +2.9 2,852,096 - ABIE41_RS13895 0.41 -0.9 2,852,096 - ABIE41_RS13895 0.41 +0.3 2,852,096 - ABIE41_RS13895 0.41 -0.1 2,852,096 - ABIE41_RS13895 0.41 -0.6 2,852,096 - ABIE41_RS13895 0.41 +0.0 2,852,222 + ABIE41_RS13895 0.52 +0.9 2,852,223 - ABIE41_RS13895 0.52 +0.0 2,852,223 - ABIE41_RS13895 0.52 -1.0 2,852,223 - ABIE41_RS13895 0.52 -0.4 2,852,285 + ABIE41_RS13895 0.57 -1.2 2,852,285 + ABIE41_RS13895 0.57 -0.4 2,852,303 + ABIE41_RS13895 0.58 -1.8 2,852,304 - ABIE41_RS13895 0.58 -0.5 2,852,304 - ABIE41_RS13895 0.58 +0.1 2,852,304 - ABIE41_RS13895 0.58 +0.5 2,852,305 + ABIE41_RS13895 0.58 -0.9 2,852,305 + ABIE41_RS13895 0.58 +0.6 2,852,501 + ABIE41_RS13895 0.74 -0.9 2,852,502 - ABIE41_RS13895 0.75 +1.2 2,852,572 - ABIE41_RS13895 0.80 -0.9 2,852,683 - ABIE41_RS13895 0.89 -0.2 2,853,021 + ABIE41_RS13900 0.30 +1.1 2,853,022 - ABIE41_RS13900 0.30 -2.1 2,853,022 - ABIE41_RS13900 0.30 -0.3 2,853,371 - ABIE41_RS13900 0.82 +0.5 2,853,548 + -0.2 2,853,548 + +0.7 2,853,548 + +1.0 2,853,549 - -1.4 2,853,592 + +0.5 2,853,593 - +0.6 2,853,937 + ABIE41_RS13905 0.25 -0.6 2,853,937 + ABIE41_RS13905 0.25 -0.6 2,853,937 + ABIE41_RS13905 0.25 +0.0 2,853,938 - ABIE41_RS13905 0.25 +0.4 2,853,938 - ABIE41_RS13905 0.25 -1.9 2,853,938 - ABIE41_RS13905 0.25 -4.0 2,853,938 - ABIE41_RS13905 0.25 -0.1
Or see this region's nucleotide sequence