Strain Fitness in Bosea sp. OAE506 around ABIE41_RS13900

Experiment: R2A with 3-octanone 2.65516666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS13895 and ABIE41_RS13900 are separated by 9 nucleotidesABIE41_RS13900 and ABIE41_RS13905 are separated by 131 nucleotides ABIE41_RS13895: ABIE41_RS13895 - PLP-dependent aminotransferase family protein, at 2,851,592 to 2,852,812 _RS13895 ABIE41_RS13900: ABIE41_RS13900 - DUF938 domain-containing protein, at 2,852,822 to 2,853,487 _RS13900 ABIE41_RS13905: ABIE41_RS13905 - hemolysin family protein, at 2,853,619 to 2,854,881 _RS13905 Position (kb) 2852 2853 2854Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2851.982 kb on + strand, within ABIE41_RS13895at 2851.983 kb on - strand, within ABIE41_RS13895at 2852.094 kb on - strand, within ABIE41_RS13895at 2852.094 kb on - strand, within ABIE41_RS13895at 2852.095 kb on + strand, within ABIE41_RS13895at 2852.096 kb on - strand, within ABIE41_RS13895at 2852.096 kb on - strand, within ABIE41_RS13895at 2852.096 kb on - strand, within ABIE41_RS13895at 2852.096 kb on - strand, within ABIE41_RS13895at 2852.096 kb on - strand, within ABIE41_RS13895at 2852.222 kb on + strand, within ABIE41_RS13895at 2852.223 kb on - strand, within ABIE41_RS13895at 2852.223 kb on - strand, within ABIE41_RS13895at 2852.223 kb on - strand, within ABIE41_RS13895at 2852.285 kb on + strand, within ABIE41_RS13895at 2852.285 kb on + strand, within ABIE41_RS13895at 2852.303 kb on + strand, within ABIE41_RS13895at 2852.304 kb on - strand, within ABIE41_RS13895at 2852.304 kb on - strand, within ABIE41_RS13895at 2852.304 kb on - strand, within ABIE41_RS13895at 2852.305 kb on + strand, within ABIE41_RS13895at 2852.305 kb on + strand, within ABIE41_RS13895at 2852.501 kb on + strand, within ABIE41_RS13895at 2852.502 kb on - strand, within ABIE41_RS13895at 2852.572 kb on - strand, within ABIE41_RS13895at 2852.683 kb on - strand, within ABIE41_RS13895at 2853.021 kb on + strand, within ABIE41_RS13900at 2853.022 kb on - strand, within ABIE41_RS13900at 2853.022 kb on - strand, within ABIE41_RS13900at 2853.371 kb on - strand, within ABIE41_RS13900at 2853.548 kb on + strandat 2853.548 kb on + strandat 2853.548 kb on + strandat 2853.549 kb on - strandat 2853.592 kb on + strandat 2853.593 kb on - strandat 2853.937 kb on + strand, within ABIE41_RS13905at 2853.937 kb on + strand, within ABIE41_RS13905at 2853.937 kb on + strand, within ABIE41_RS13905at 2853.938 kb on - strand, within ABIE41_RS13905at 2853.938 kb on - strand, within ABIE41_RS13905at 2853.938 kb on - strand, within ABIE41_RS13905at 2853.938 kb on - strand, within ABIE41_RS13905

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM
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2,851,982 + ABIE41_RS13895 0.32 +0.3
2,851,983 - ABIE41_RS13895 0.32 +0.1
2,852,094 - ABIE41_RS13895 0.41 -0.3
2,852,094 - ABIE41_RS13895 0.41 -0.8
2,852,095 + ABIE41_RS13895 0.41 +2.9
2,852,096 - ABIE41_RS13895 0.41 -0.9
2,852,096 - ABIE41_RS13895 0.41 +0.3
2,852,096 - ABIE41_RS13895 0.41 -0.1
2,852,096 - ABIE41_RS13895 0.41 -0.6
2,852,096 - ABIE41_RS13895 0.41 +0.0
2,852,222 + ABIE41_RS13895 0.52 +0.9
2,852,223 - ABIE41_RS13895 0.52 +0.0
2,852,223 - ABIE41_RS13895 0.52 -1.0
2,852,223 - ABIE41_RS13895 0.52 -0.4
2,852,285 + ABIE41_RS13895 0.57 -1.2
2,852,285 + ABIE41_RS13895 0.57 -0.4
2,852,303 + ABIE41_RS13895 0.58 -1.8
2,852,304 - ABIE41_RS13895 0.58 -0.5
2,852,304 - ABIE41_RS13895 0.58 +0.1
2,852,304 - ABIE41_RS13895 0.58 +0.5
2,852,305 + ABIE41_RS13895 0.58 -0.9
2,852,305 + ABIE41_RS13895 0.58 +0.6
2,852,501 + ABIE41_RS13895 0.74 -0.9
2,852,502 - ABIE41_RS13895 0.75 +1.2
2,852,572 - ABIE41_RS13895 0.80 -0.9
2,852,683 - ABIE41_RS13895 0.89 -0.2
2,853,021 + ABIE41_RS13900 0.30 +1.1
2,853,022 - ABIE41_RS13900 0.30 -2.1
2,853,022 - ABIE41_RS13900 0.30 -0.3
2,853,371 - ABIE41_RS13900 0.82 +0.5
2,853,548 + -0.2
2,853,548 + +0.7
2,853,548 + +1.0
2,853,549 - -1.4
2,853,592 + +0.5
2,853,593 - +0.6
2,853,937 + ABIE41_RS13905 0.25 -0.6
2,853,937 + ABIE41_RS13905 0.25 -0.6
2,853,937 + ABIE41_RS13905 0.25 +0.0
2,853,938 - ABIE41_RS13905 0.25 +0.4
2,853,938 - ABIE41_RS13905 0.25 -1.9
2,853,938 - ABIE41_RS13905 0.25 -4.0
2,853,938 - ABIE41_RS13905 0.25 -0.1

Or see this region's nucleotide sequence