Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05905

Experiment: R2A with 3-octanone 2.65516666666667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS05900 and ABIE41_RS05905 are separated by 110 nucleotidesABIE41_RS05905 and ABIE41_RS05910 are separated by 111 nucleotides ABIE41_RS05900: ABIE41_RS05900 - gamma-glutamyltransferase, at 1,214,051 to 1,215,649 _RS05900 ABIE41_RS05905: ABIE41_RS05905 - ABC transporter substrate-binding protein, at 1,215,760 to 1,217,340 _RS05905 ABIE41_RS05910: ABIE41_RS05910 - amidase family protein, at 1,217,452 to 1,218,945 _RS05910 Position (kb) 1215 1216 1217 1218Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1215.023 kb on + strand, within ABIE41_RS05900at 1215.023 kb on + strand, within ABIE41_RS05900at 1215.023 kb on + strand, within ABIE41_RS05900at 1215.023 kb on + strand, within ABIE41_RS05900at 1215.024 kb on - strand, within ABIE41_RS05900at 1215.024 kb on - strand, within ABIE41_RS05900at 1215.024 kb on - strand, within ABIE41_RS05900at 1215.024 kb on - strand, within ABIE41_RS05900at 1215.024 kb on - strand, within ABIE41_RS05900at 1215.024 kb on - strand, within ABIE41_RS05900at 1215.657 kb on + strandat 1215.658 kb on - strandat 1215.658 kb on - strandat 1215.751 kb on + strandat 1215.752 kb on - strandat 1215.936 kb on - strand, within ABIE41_RS05905at 1215.977 kb on + strand, within ABIE41_RS05905at 1215.977 kb on + strand, within ABIE41_RS05905at 1215.978 kb on - strand, within ABIE41_RS05905at 1216.019 kb on + strand, within ABIE41_RS05905at 1216.019 kb on + strand, within ABIE41_RS05905at 1216.019 kb on + strand, within ABIE41_RS05905at 1216.020 kb on - strand, within ABIE41_RS05905at 1216.020 kb on - strand, within ABIE41_RS05905at 1216.182 kb on - strand, within ABIE41_RS05905at 1216.182 kb on - strand, within ABIE41_RS05905at 1216.182 kb on - strand, within ABIE41_RS05905at 1216.253 kb on + strand, within ABIE41_RS05905at 1216.254 kb on - strand, within ABIE41_RS05905at 1216.325 kb on + strand, within ABIE41_RS05905at 1216.325 kb on + strand, within ABIE41_RS05905at 1216.325 kb on + strand, within ABIE41_RS05905at 1216.325 kb on + strand, within ABIE41_RS05905at 1216.325 kb on + strand, within ABIE41_RS05905at 1216.326 kb on - strand, within ABIE41_RS05905at 1216.326 kb on - strand, within ABIE41_RS05905at 1216.326 kb on - strand, within ABIE41_RS05905at 1216.328 kb on + strand, within ABIE41_RS05905at 1216.329 kb on - strand, within ABIE41_RS05905at 1216.329 kb on - strand, within ABIE41_RS05905at 1216.329 kb on - strand, within ABIE41_RS05905at 1216.401 kb on + strand, within ABIE41_RS05905at 1216.401 kb on + strand, within ABIE41_RS05905at 1216.401 kb on + strand, within ABIE41_RS05905at 1216.401 kb on + strand, within ABIE41_RS05905at 1216.401 kb on + strand, within ABIE41_RS05905at 1216.401 kb on + strand, within ABIE41_RS05905at 1216.401 kb on + strand, within ABIE41_RS05905at 1216.402 kb on - strand, within ABIE41_RS05905at 1216.402 kb on - strand, within ABIE41_RS05905at 1216.402 kb on - strand, within ABIE41_RS05905at 1216.402 kb on - strand, within ABIE41_RS05905at 1216.402 kb on - strand, within ABIE41_RS05905at 1216.402 kb on - strand, within ABIE41_RS05905at 1216.403 kb on + strand, within ABIE41_RS05905at 1216.403 kb on + strand, within ABIE41_RS05905at 1216.403 kb on + strand, within ABIE41_RS05905at 1216.403 kb on + strand, within ABIE41_RS05905at 1216.403 kb on + strand, within ABIE41_RS05905at 1216.403 kb on + strand, within ABIE41_RS05905at 1216.404 kb on - strand, within ABIE41_RS05905at 1216.404 kb on - strand, within ABIE41_RS05905at 1216.404 kb on - strand, within ABIE41_RS05905at 1216.404 kb on - strand, within ABIE41_RS05905at 1216.709 kb on + strand, within ABIE41_RS05905at 1216.709 kb on + strand, within ABIE41_RS05905at 1216.709 kb on + strand, within ABIE41_RS05905at 1216.709 kb on + strand, within ABIE41_RS05905at 1216.709 kb on + strand, within ABIE41_RS05905at 1216.709 kb on + strand, within ABIE41_RS05905at 1216.728 kb on - strand, within ABIE41_RS05905at 1216.751 kb on + strand, within ABIE41_RS05905at 1216.751 kb on + strand, within ABIE41_RS05905at 1216.751 kb on + strand, within ABIE41_RS05905at 1216.752 kb on - strand, within ABIE41_RS05905at 1216.752 kb on - strand, within ABIE41_RS05905at 1216.752 kb on - strand, within ABIE41_RS05905at 1216.752 kb on - strand, within ABIE41_RS05905at 1216.752 kb on - strand, within ABIE41_RS05905at 1216.752 kb on - strand, within ABIE41_RS05905at 1216.752 kb on - strand, within ABIE41_RS05905at 1216.752 kb on - strand, within ABIE41_RS05905at 1216.752 kb on - strand, within ABIE41_RS05905at 1216.752 kb on - strand, within ABIE41_RS05905at 1217.147 kb on + strand, within ABIE41_RS05905at 1217.147 kb on + strand, within ABIE41_RS05905at 1217.147 kb on + strand, within ABIE41_RS05905at 1217.147 kb on + strand, within ABIE41_RS05905at 1217.148 kb on - strand, within ABIE41_RS05905at 1217.159 kb on + strand, within ABIE41_RS05905at 1217.159 kb on + strand, within ABIE41_RS05905at 1217.160 kb on - strand, within ABIE41_RS05905at 1217.165 kb on + strand, within ABIE41_RS05905at 1217.165 kb on + strand, within ABIE41_RS05905at 1217.165 kb on + strand, within ABIE41_RS05905at 1217.165 kb on + strand, within ABIE41_RS05905at 1217.165 kb on + strand, within ABIE41_RS05905at 1217.165 kb on + strand, within ABIE41_RS05905at 1217.165 kb on + strand, within ABIE41_RS05905at 1217.165 kb on + strand, within ABIE41_RS05905at 1217.165 kb on + strand, within ABIE41_RS05905at 1217.165 kb on + strand, within ABIE41_RS05905at 1217.165 kb on + strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.166 kb on - strand, within ABIE41_RS05905at 1217.168 kb on + strand, within ABIE41_RS05905at 1217.168 kb on + strand, within ABIE41_RS05905at 1217.168 kb on + strand, within ABIE41_RS05905at 1217.168 kb on + strand, within ABIE41_RS05905at 1217.168 kb on + strand, within ABIE41_RS05905at 1217.168 kb on + strand, within ABIE41_RS05905at 1217.169 kb on - strand, within ABIE41_RS05905at 1217.169 kb on - strand, within ABIE41_RS05905at 1217.696 kb on + strand, within ABIE41_RS05910at 1217.696 kb on + strand, within ABIE41_RS05910at 1217.696 kb on + strand, within ABIE41_RS05910at 1217.697 kb on - strand, within ABIE41_RS05910at 1217.697 kb on - strand, within ABIE41_RS05910at 1217.720 kb on + strand, within ABIE41_RS05910at 1217.720 kb on + strand, within ABIE41_RS05910at 1217.720 kb on + strand, within ABIE41_RS05910at 1217.756 kb on + strand, within ABIE41_RS05910at 1217.813 kb on + strand, within ABIE41_RS05910at 1217.814 kb on - strand, within ABIE41_RS05910at 1217.814 kb on - strand, within ABIE41_RS05910at 1217.843 kb on + strand, within ABIE41_RS05910at 1217.844 kb on - strand, within ABIE41_RS05910at 1217.844 kb on - strand, within ABIE41_RS05910at 1217.963 kb on + strand, within ABIE41_RS05910at 1217.963 kb on + strand, within ABIE41_RS05910at 1217.963 kb on + strand, within ABIE41_RS05910at 1217.963 kb on + strand, within ABIE41_RS05910at 1217.963 kb on + strand, within ABIE41_RS05910at 1217.963 kb on + strand, within ABIE41_RS05910at 1217.963 kb on + strand, within ABIE41_RS05910at 1217.963 kb on + strand, within ABIE41_RS05910at 1217.963 kb on + strand, within ABIE41_RS05910at 1217.963 kb on + strand, within ABIE41_RS05910at 1217.964 kb on - strand, within ABIE41_RS05910at 1217.964 kb on - strand, within ABIE41_RS05910at 1217.964 kb on - strand, within ABIE41_RS05910at 1217.964 kb on - strand, within ABIE41_RS05910at 1217.964 kb on - strand, within ABIE41_RS05910at 1217.964 kb on - strand, within ABIE41_RS05910at 1217.964 kb on - strand, within ABIE41_RS05910at 1217.964 kb on - strand, within ABIE41_RS05910at 1217.964 kb on - strand, within ABIE41_RS05910at 1217.964 kb on - strand, within ABIE41_RS05910at 1217.964 kb on - strand, within ABIE41_RS05910at 1217.964 kb on - strand, within ABIE41_RS05910at 1217.964 kb on - strand, within ABIE41_RS05910at 1217.964 kb on - strand, within ABIE41_RS05910at 1217.964 kb on - strand, within ABIE41_RS05910at 1218.056 kb on - strand, within ABIE41_RS05910

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM
remove
1,215,023 + ABIE41_RS05900 0.61 +1.0
1,215,023 + ABIE41_RS05900 0.61 -0.5
1,215,023 + ABIE41_RS05900 0.61 -0.2
1,215,023 + ABIE41_RS05900 0.61 +1.4
1,215,024 - ABIE41_RS05900 0.61 -0.4
1,215,024 - ABIE41_RS05900 0.61 -0.2
1,215,024 - ABIE41_RS05900 0.61 -0.5
1,215,024 - ABIE41_RS05900 0.61 -0.2
1,215,024 - ABIE41_RS05900 0.61 +1.0
1,215,024 - ABIE41_RS05900 0.61 +1.2
1,215,657 + +1.0
1,215,658 - -0.1
1,215,658 - +0.8
1,215,751 + -0.6
1,215,752 - +0.3
1,215,936 - ABIE41_RS05905 0.11 -0.7
1,215,977 + ABIE41_RS05905 0.14 -0.2
1,215,977 + ABIE41_RS05905 0.14 -0.4
1,215,978 - ABIE41_RS05905 0.14 +0.3
1,216,019 + ABIE41_RS05905 0.16 -0.2
1,216,019 + ABIE41_RS05905 0.16 -0.4
1,216,019 + ABIE41_RS05905 0.16 -0.9
1,216,020 - ABIE41_RS05905 0.16 -1.1
1,216,020 - ABIE41_RS05905 0.16 +0.0
1,216,182 - ABIE41_RS05905 0.27 +0.2
1,216,182 - ABIE41_RS05905 0.27 +0.2
1,216,182 - ABIE41_RS05905 0.27 +2.0
1,216,253 + ABIE41_RS05905 0.31 -0.2
1,216,254 - ABIE41_RS05905 0.31 -1.4
1,216,325 + ABIE41_RS05905 0.36 +0.1
1,216,325 + ABIE41_RS05905 0.36 -0.2
1,216,325 + ABIE41_RS05905 0.36 -0.3
1,216,325 + ABIE41_RS05905 0.36 -0.3
1,216,325 + ABIE41_RS05905 0.36 -0.2
1,216,326 - ABIE41_RS05905 0.36 +0.9
1,216,326 - ABIE41_RS05905 0.36 +0.2
1,216,326 - ABIE41_RS05905 0.36 +0.0
1,216,328 + ABIE41_RS05905 0.36 +0.7
1,216,329 - ABIE41_RS05905 0.36 -0.2
1,216,329 - ABIE41_RS05905 0.36 -0.9
1,216,329 - ABIE41_RS05905 0.36 -0.2
1,216,401 + ABIE41_RS05905 0.41 +0.2
1,216,401 + ABIE41_RS05905 0.41 +0.6
1,216,401 + ABIE41_RS05905 0.41 -0.5
1,216,401 + ABIE41_RS05905 0.41 -0.1
1,216,401 + ABIE41_RS05905 0.41 +0.9
1,216,401 + ABIE41_RS05905 0.41 +0.4
1,216,401 + ABIE41_RS05905 0.41 -0.5
1,216,402 - ABIE41_RS05905 0.41 +0.3
1,216,402 - ABIE41_RS05905 0.41 +0.4
1,216,402 - ABIE41_RS05905 0.41 -0.9
1,216,402 - ABIE41_RS05905 0.41 +0.4
1,216,402 - ABIE41_RS05905 0.41 -0.1
1,216,402 - ABIE41_RS05905 0.41 +0.1
1,216,403 + ABIE41_RS05905 0.41 +0.7
1,216,403 + ABIE41_RS05905 0.41 +0.5
1,216,403 + ABIE41_RS05905 0.41 +0.5
1,216,403 + ABIE41_RS05905 0.41 -0.1
1,216,403 + ABIE41_RS05905 0.41 +0.1
1,216,403 + ABIE41_RS05905 0.41 -0.2
1,216,404 - ABIE41_RS05905 0.41 -2.4
1,216,404 - ABIE41_RS05905 0.41 +0.5
1,216,404 - ABIE41_RS05905 0.41 -0.8
1,216,404 - ABIE41_RS05905 0.41 +0.0
1,216,709 + ABIE41_RS05905 0.60 +0.5
1,216,709 + ABIE41_RS05905 0.60 +0.6
1,216,709 + ABIE41_RS05905 0.60 +0.7
1,216,709 + ABIE41_RS05905 0.60 +1.4
1,216,709 + ABIE41_RS05905 0.60 +0.8
1,216,709 + ABIE41_RS05905 0.60 +0.1
1,216,728 - ABIE41_RS05905 0.61 +0.2
1,216,751 + ABIE41_RS05905 0.63 +0.5
1,216,751 + ABIE41_RS05905 0.63 -0.3
1,216,751 + ABIE41_RS05905 0.63 -2.4
1,216,752 - ABIE41_RS05905 0.63 +2.4
1,216,752 - ABIE41_RS05905 0.63 +1.0
1,216,752 - ABIE41_RS05905 0.63 -0.8
1,216,752 - ABIE41_RS05905 0.63 +0.9
1,216,752 - ABIE41_RS05905 0.63 +0.5
1,216,752 - ABIE41_RS05905 0.63 -1.3
1,216,752 - ABIE41_RS05905 0.63 +0.0
1,216,752 - ABIE41_RS05905 0.63 +0.3
1,216,752 - ABIE41_RS05905 0.63 +0.5
1,216,752 - ABIE41_RS05905 0.63 +0.3
1,217,147 + ABIE41_RS05905 0.88 -1.3
1,217,147 + ABIE41_RS05905 0.88 -0.2
1,217,147 + ABIE41_RS05905 0.88 +0.8
1,217,147 + ABIE41_RS05905 0.88 -0.3
1,217,148 - ABIE41_RS05905 0.88 +1.0
1,217,159 + ABIE41_RS05905 0.88 +0.0
1,217,159 + ABIE41_RS05905 0.88 -0.3
1,217,160 - ABIE41_RS05905 0.89 -0.1
1,217,165 + ABIE41_RS05905 0.89 -1.0
1,217,165 + ABIE41_RS05905 0.89 +0.3
1,217,165 + ABIE41_RS05905 0.89 +1.9
1,217,165 + ABIE41_RS05905 0.89 -0.7
1,217,165 + ABIE41_RS05905 0.89 +1.5
1,217,165 + ABIE41_RS05905 0.89 -2.0
1,217,165 + ABIE41_RS05905 0.89 +0.7
1,217,165 + ABIE41_RS05905 0.89 +1.8
1,217,165 + ABIE41_RS05905 0.89 +0.4
1,217,165 + ABIE41_RS05905 0.89 -0.2
1,217,165 + ABIE41_RS05905 0.89 +0.3
1,217,166 - ABIE41_RS05905 0.89 +0.4
1,217,166 - ABIE41_RS05905 0.89 -0.2
1,217,166 - ABIE41_RS05905 0.89 -0.6
1,217,166 - ABIE41_RS05905 0.89 -0.3
1,217,166 - ABIE41_RS05905 0.89 -0.2
1,217,166 - ABIE41_RS05905 0.89 -3.0
1,217,166 - ABIE41_RS05905 0.89 +0.3
1,217,166 - ABIE41_RS05905 0.89 -0.6
1,217,166 - ABIE41_RS05905 0.89 -1.4
1,217,166 - ABIE41_RS05905 0.89 +0.0
1,217,166 - ABIE41_RS05905 0.89 -1.2
1,217,166 - ABIE41_RS05905 0.89 -0.2
1,217,166 - ABIE41_RS05905 0.89 -0.4
1,217,166 - ABIE41_RS05905 0.89 -1.3
1,217,166 - ABIE41_RS05905 0.89 -3.4
1,217,166 - ABIE41_RS05905 0.89 -0.5
1,217,166 - ABIE41_RS05905 0.89 -0.2
1,217,166 - ABIE41_RS05905 0.89 -0.3
1,217,168 + ABIE41_RS05905 0.89 +0.1
1,217,168 + ABIE41_RS05905 0.89 +0.6
1,217,168 + ABIE41_RS05905 0.89 +0.7
1,217,168 + ABIE41_RS05905 0.89 +1.0
1,217,168 + ABIE41_RS05905 0.89 +0.9
1,217,168 + ABIE41_RS05905 0.89 -0.0
1,217,169 - ABIE41_RS05905 0.89 +0.2
1,217,169 - ABIE41_RS05905 0.89 +0.3
1,217,696 + ABIE41_RS05910 0.16 +0.9
1,217,696 + ABIE41_RS05910 0.16 -0.2
1,217,696 + ABIE41_RS05910 0.16 +0.8
1,217,697 - ABIE41_RS05910 0.16 +0.3
1,217,697 - ABIE41_RS05910 0.16 +0.9
1,217,720 + ABIE41_RS05910 0.18 -1.0
1,217,720 + ABIE41_RS05910 0.18 +0.2
1,217,720 + ABIE41_RS05910 0.18 +1.0
1,217,756 + ABIE41_RS05910 0.20 -0.3
1,217,813 + ABIE41_RS05910 0.24 -0.9
1,217,814 - ABIE41_RS05910 0.24 -0.3
1,217,814 - ABIE41_RS05910 0.24 -0.6
1,217,843 + ABIE41_RS05910 0.26 +1.6
1,217,844 - ABIE41_RS05910 0.26 -0.5
1,217,844 - ABIE41_RS05910 0.26 -0.1
1,217,963 + ABIE41_RS05910 0.34 +0.9
1,217,963 + ABIE41_RS05910 0.34 +0.7
1,217,963 + ABIE41_RS05910 0.34 -0.5
1,217,963 + ABIE41_RS05910 0.34 -1.0
1,217,963 + ABIE41_RS05910 0.34 -0.3
1,217,963 + ABIE41_RS05910 0.34 -0.3
1,217,963 + ABIE41_RS05910 0.34 +0.1
1,217,963 + ABIE41_RS05910 0.34 +0.1
1,217,963 + ABIE41_RS05910 0.34 -0.8
1,217,963 + ABIE41_RS05910 0.34 +0.5
1,217,964 - ABIE41_RS05910 0.34 -0.5
1,217,964 - ABIE41_RS05910 0.34 -1.2
1,217,964 - ABIE41_RS05910 0.34 +0.4
1,217,964 - ABIE41_RS05910 0.34 -0.7
1,217,964 - ABIE41_RS05910 0.34 -2.7
1,217,964 - ABIE41_RS05910 0.34 +0.9
1,217,964 - ABIE41_RS05910 0.34 -0.8
1,217,964 - ABIE41_RS05910 0.34 +0.1
1,217,964 - ABIE41_RS05910 0.34 -0.5
1,217,964 - ABIE41_RS05910 0.34 +0.8
1,217,964 - ABIE41_RS05910 0.34 +0.4
1,217,964 - ABIE41_RS05910 0.34 +0.5
1,217,964 - ABIE41_RS05910 0.34 +0.3
1,217,964 - ABIE41_RS05910 0.34 +0.1
1,217,964 - ABIE41_RS05910 0.34 +0.1
1,218,056 - ABIE41_RS05910 0.40 -2.1

Or see this region's nucleotide sequence