Experiment: R2A with 3-octanone 2.65516666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS00935 and ABIE41_RS00940 are separated by 10 nucleotides ABIE41_RS00940 and ABIE41_RS00945 are separated by 115 nucleotides ABIE41_RS00945 and ABIE41_RS00950 are separated by 126 nucleotides
ABIE41_RS00935: ABIE41_RS00935 - DUF2231 domain-containing protein, at 178,896 to 179,435
_RS00935
ABIE41_RS00940: ABIE41_RS00940 - DUF4142 domain-containing protein, at 179,446 to 179,931
_RS00940
ABIE41_RS00945: ABIE41_RS00945 - PepSY domain-containing protein, at 180,047 to 180,346
_RS00945
ABIE41_RS00950: ABIE41_RS00950 - NAD(P)/FAD-dependent oxidoreductase, at 180,473 to 181,378
_RS00950
Position (kb) 180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 179.062 kb on + strand, within ABIE41_RS00935 at 179.063 kb on - strand, within ABIE41_RS00935 at 179.063 kb on - strand, within ABIE41_RS00935 at 179.266 kb on + strand, within ABIE41_RS00935 at 179.268 kb on + strand, within ABIE41_RS00935 at 179.269 kb on - strand, within ABIE41_RS00935 at 179.269 kb on - strand, within ABIE41_RS00935 at 179.269 kb on - strand, within ABIE41_RS00935 at 179.302 kb on + strand, within ABIE41_RS00935 at 179.303 kb on - strand, within ABIE41_RS00935 at 179.382 kb on - strand at 179.414 kb on - strand at 179.414 kb on - strand at 179.426 kb on + strand at 179.426 kb on + strand at 179.448 kb on - strand at 179.448 kb on - strand at 179.448 kb on - strand at 179.555 kb on + strand, within ABIE41_RS00940 at 179.572 kb on + strand, within ABIE41_RS00940 at 179.573 kb on - strand, within ABIE41_RS00940 at 179.573 kb on - strand, within ABIE41_RS00940 at 179.573 kb on - strand, within ABIE41_RS00940 at 179.573 kb on - strand, within ABIE41_RS00940 at 179.573 kb on - strand, within ABIE41_RS00940 at 179.573 kb on - strand, within ABIE41_RS00940 at 179.609 kb on + strand, within ABIE41_RS00940 at 179.609 kb on + strand, within ABIE41_RS00940 at 179.609 kb on + strand, within ABIE41_RS00940 at 179.609 kb on + strand, within ABIE41_RS00940 at 179.610 kb on - strand, within ABIE41_RS00940 at 179.610 kb on - strand, within ABIE41_RS00940 at 179.726 kb on - strand, within ABIE41_RS00940 at 179.886 kb on + strand at 179.887 kb on - strand at 179.887 kb on - strand at 179.979 kb on + strand at 179.979 kb on + strand at 179.979 kb on + strand at 179.980 kb on - strand at 180.079 kb on - strand, within ABIE41_RS00945 at 180.079 kb on - strand, within ABIE41_RS00945 at 180.112 kb on - strand, within ABIE41_RS00945 at 180.112 kb on - strand, within ABIE41_RS00945 at 180.171 kb on + strand, within ABIE41_RS00945 at 180.172 kb on - strand, within ABIE41_RS00945 at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.356 kb on - strand at 180.356 kb on - strand at 180.356 kb on - strand at 180.356 kb on - strand at 180.429 kb on + strand at 180.429 kb on + strand at 180.430 kb on - strand at 180.430 kb on - strand at 180.430 kb on - strand at 180.492 kb on - strand at 180.582 kb on + strand, within ABIE41_RS00950 at 180.582 kb on + strand, within ABIE41_RS00950 at 180.582 kb on + strand, within ABIE41_RS00950 at 180.582 kb on + strand, within ABIE41_RS00950 at 180.583 kb on - strand, within ABIE41_RS00950 at 180.583 kb on - strand, within ABIE41_RS00950 at 180.608 kb on - strand, within ABIE41_RS00950 at 180.699 kb on + strand, within ABIE41_RS00950 at 180.700 kb on - strand, within ABIE41_RS00950 at 180.700 kb on - strand, within ABIE41_RS00950 at 180.700 kb on - strand, within ABIE41_RS00950 at 180.700 kb on - strand, within ABIE41_RS00950 at 180.827 kb on + strand, within ABIE41_RS00950 at 180.967 kb on - strand, within ABIE41_RS00950 at 180.967 kb on - strand, within ABIE41_RS00950 at 180.987 kb on + strand, within ABIE41_RS00950 at 181.082 kb on + strand, within ABIE41_RS00950 at 181.082 kb on + strand, within ABIE41_RS00950 at 181.082 kb on + strand, within ABIE41_RS00950 at 181.083 kb on - strand, within ABIE41_RS00950 at 181.100 kb on - strand, within ABIE41_RS00950 at 181.100 kb on - strand, within ABIE41_RS00950 at 181.100 kb on - strand, within ABIE41_RS00950 at 181.167 kb on + strand, within ABIE41_RS00950 at 181.168 kb on - strand, within ABIE41_RS00950 at 181.240 kb on + strand, within ABIE41_RS00950 at 181.240 kb on + strand, within ABIE41_RS00950 at 181.240 kb on + strand, within ABIE41_RS00950 at 181.240 kb on + strand, within ABIE41_RS00950 at 181.240 kb on + strand, within ABIE41_RS00950 at 181.240 kb on + strand, within ABIE41_RS00950 at 181.240 kb on + strand, within ABIE41_RS00950 at 181.240 kb on + strand, within ABIE41_RS00950 at 181.240 kb on + strand, within ABIE41_RS00950 at 181.241 kb on - strand, within ABIE41_RS00950 at 181.241 kb on - strand, within ABIE41_RS00950 at 181.241 kb on - strand, within ABIE41_RS00950 at 181.241 kb on - strand, within ABIE41_RS00950 at 181.241 kb on - strand, within ABIE41_RS00950 at 181.241 kb on - strand, within ABIE41_RS00950 at 181.241 kb on - strand, within ABIE41_RS00950 at 181.241 kb on - strand, within ABIE41_RS00950 at 181.241 kb on - strand, within ABIE41_RS00950 at 181.241 kb on - strand, within ABIE41_RS00950 at 181.242 kb on + strand, within ABIE41_RS00950 at 181.242 kb on + strand, within ABIE41_RS00950 at 181.242 kb on + strand, within ABIE41_RS00950 at 181.242 kb on + strand, within ABIE41_RS00950 at 181.242 kb on + strand, within ABIE41_RS00950 at 181.242 kb on + strand, within ABIE41_RS00950 at 181.242 kb on + strand, within ABIE41_RS00950 at 181.242 kb on + strand, within ABIE41_RS00950 at 181.243 kb on - strand, within ABIE41_RS00950 at 181.243 kb on - strand, within ABIE41_RS00950 at 181.243 kb on - strand, within ABIE41_RS00950 at 181.243 kb on - strand, within ABIE41_RS00950 at 181.243 kb on - strand, within ABIE41_RS00950 at 181.243 kb on - strand, within ABIE41_RS00950 at 181.243 kb on - strand, within ABIE41_RS00950 at 181.317 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM remove 179,062 + ABIE41_RS00935 0.31 -0.6 179,063 - ABIE41_RS00935 0.31 +1.2 179,063 - ABIE41_RS00935 0.31 +0.2 179,266 + ABIE41_RS00935 0.69 -0.0 179,268 + ABIE41_RS00935 0.69 +1.8 179,269 - ABIE41_RS00935 0.69 +0.6 179,269 - ABIE41_RS00935 0.69 -2.0 179,269 - ABIE41_RS00935 0.69 +0.4 179,302 + ABIE41_RS00935 0.75 +0.4 179,303 - ABIE41_RS00935 0.75 -0.1 179,382 - +0.4 179,414 - -0.3 179,414 - +1.0 179,426 + +0.0 179,426 + +0.2 179,448 - -0.1 179,448 - +0.1 179,448 - +1.7 179,555 + ABIE41_RS00940 0.22 +0.5 179,572 + ABIE41_RS00940 0.26 +1.8 179,573 - ABIE41_RS00940 0.26 +1.0 179,573 - ABIE41_RS00940 0.26 -1.2 179,573 - ABIE41_RS00940 0.26 +1.0 179,573 - ABIE41_RS00940 0.26 -0.5 179,573 - ABIE41_RS00940 0.26 +0.1 179,573 - ABIE41_RS00940 0.26 +0.6 179,609 + ABIE41_RS00940 0.34 +0.3 179,609 + ABIE41_RS00940 0.34 +0.3 179,609 + ABIE41_RS00940 0.34 +0.2 179,609 + ABIE41_RS00940 0.34 +0.5 179,610 - ABIE41_RS00940 0.34 +2.8 179,610 - ABIE41_RS00940 0.34 +0.6 179,726 - ABIE41_RS00940 0.58 +0.6 179,886 + +0.6 179,887 - +0.1 179,887 - +0.7 179,979 + -0.3 179,979 + +1.0 179,979 + -1.0 179,980 - -1.6 180,079 - ABIE41_RS00945 0.11 +0.5 180,079 - ABIE41_RS00945 0.11 -1.5 180,112 - ABIE41_RS00945 0.22 -0.5 180,112 - ABIE41_RS00945 0.22 -0.3 180,171 + ABIE41_RS00945 0.41 -0.5 180,172 - ABIE41_RS00945 0.42 +0.0 180,348 + -0.3 180,348 + -0.5 180,348 + -0.4 180,348 + -1.0 180,348 + -1.4 180,348 + -0.5 180,348 + -0.3 180,348 + -0.2 180,348 + +0.5 180,348 + -0.7 180,348 + +0.6 180,348 + +0.4 180,348 + -0.3 180,348 + -0.1 180,348 + +0.2 180,348 + -2.3 180,348 + -0.0 180,348 + -0.1 180,349 - +0.6 180,349 - -2.4 180,349 - +0.2 180,349 - -1.3 180,349 - -1.4 180,349 - -0.0 180,349 - +0.6 180,349 - +1.0 180,349 - +0.3 180,349 - +0.3 180,349 - -1.1 180,349 - +0.2 180,349 - -0.5 180,349 - -0.8 180,349 - +0.4 180,349 - +0.7 180,349 - -0.5 180,349 - -0.3 180,349 - -0.2 180,349 - -0.5 180,349 - -0.2 180,349 - -0.2 180,349 - +2.2 180,349 - -0.7 180,356 - -0.2 180,356 - -1.9 180,356 - +0.1 180,356 - -0.1 180,429 + +1.3 180,429 + -0.2 180,430 - -0.5 180,430 - -2.0 180,430 - -0.3 180,492 - -2.0 180,582 + ABIE41_RS00950 0.12 -0.2 180,582 + ABIE41_RS00950 0.12 +0.2 180,582 + ABIE41_RS00950 0.12 +0.2 180,582 + ABIE41_RS00950 0.12 +1.5 180,583 - ABIE41_RS00950 0.12 +0.3 180,583 - ABIE41_RS00950 0.12 +0.0 180,608 - ABIE41_RS00950 0.15 +1.3 180,699 + ABIE41_RS00950 0.25 -2.7 180,700 - ABIE41_RS00950 0.25 -0.6 180,700 - ABIE41_RS00950 0.25 +0.0 180,700 - ABIE41_RS00950 0.25 +0.4 180,700 - ABIE41_RS00950 0.25 +0.0 180,827 + ABIE41_RS00950 0.39 -0.9 180,967 - ABIE41_RS00950 0.55 +1.4 180,967 - ABIE41_RS00950 0.55 -0.7 180,987 + ABIE41_RS00950 0.57 -1.1 181,082 + ABIE41_RS00950 0.67 -0.3 181,082 + ABIE41_RS00950 0.67 +0.9 181,082 + ABIE41_RS00950 0.67 -0.6 181,083 - ABIE41_RS00950 0.67 -0.4 181,100 - ABIE41_RS00950 0.69 +0.0 181,100 - ABIE41_RS00950 0.69 -0.5 181,100 - ABIE41_RS00950 0.69 -1.5 181,167 + ABIE41_RS00950 0.77 -0.3 181,168 - ABIE41_RS00950 0.77 -0.5 181,240 + ABIE41_RS00950 0.85 -0.4 181,240 + ABIE41_RS00950 0.85 -0.8 181,240 + ABIE41_RS00950 0.85 -1.1 181,240 + ABIE41_RS00950 0.85 +0.6 181,240 + ABIE41_RS00950 0.85 +0.0 181,240 + ABIE41_RS00950 0.85 -0.1 181,240 + ABIE41_RS00950 0.85 -0.1 181,240 + ABIE41_RS00950 0.85 -2.8 181,240 + ABIE41_RS00950 0.85 -0.7 181,241 - ABIE41_RS00950 0.85 -1.0 181,241 - ABIE41_RS00950 0.85 +0.9 181,241 - ABIE41_RS00950 0.85 -1.0 181,241 - ABIE41_RS00950 0.85 +1.4 181,241 - ABIE41_RS00950 0.85 +0.4 181,241 - ABIE41_RS00950 0.85 +1.0 181,241 - ABIE41_RS00950 0.85 -2.0 181,241 - ABIE41_RS00950 0.85 +0.2 181,241 - ABIE41_RS00950 0.85 -1.4 181,241 - ABIE41_RS00950 0.85 +0.5 181,242 + ABIE41_RS00950 0.85 -0.0 181,242 + ABIE41_RS00950 0.85 +0.0 181,242 + ABIE41_RS00950 0.85 +0.8 181,242 + ABIE41_RS00950 0.85 -0.4 181,242 + ABIE41_RS00950 0.85 -0.5 181,242 + ABIE41_RS00950 0.85 -0.5 181,242 + ABIE41_RS00950 0.85 +0.7 181,242 + ABIE41_RS00950 0.85 +0.1 181,243 - ABIE41_RS00950 0.85 -0.5 181,243 - ABIE41_RS00950 0.85 -0.9 181,243 - ABIE41_RS00950 0.85 -1.3 181,243 - ABIE41_RS00950 0.85 -0.5 181,243 - ABIE41_RS00950 0.85 -0.3 181,243 - ABIE41_RS00950 0.85 -0.2 181,243 - ABIE41_RS00950 0.85 +0.2 181,317 + -0.9
Or see this region's nucleotide sequence