Strain Fitness in Pseudomonas sp. RS175 around PFR28_05091

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
5,830,070	+		PFR28_05090	0.70	+0.8
5,830,070	+		PFR28_05090	0.70	-1.2
5,830,070	+		PFR28_05090	0.70	-0.3
5,830,071	-		PFR28_05090	0.70	-1.4
5,830,512	+				-0.5
5,830,513	-				+0.1
5,830,552	+				+0.3
5,830,552	+				-0.2
5,830,552	+				+0.2
5,830,552	+				+2.0
5,830,552	+				-0.5
5,830,552	+				-0.3
5,830,552	+				-0.6
5,830,553	-				-0.8
5,830,553	-				+0.7
5,830,553	-				-1.1
5,830,553	-				-0.0
5,830,553	-				+0.1
5,830,582	+				-0.7
5,830,582	+				-0.7
5,830,582	+				-0.7
5,830,582	+				+0.0
5,830,582	+				+0.5
5,830,582	+				-0.4
5,830,582	+				-0.9
5,830,582	+				+1.4
5,830,582	+				+0.3
5,830,582	+				-0.6
5,830,582	+				-0.6
5,830,582	+				+0.4
5,830,582	+				-1.1
5,830,582	+				+0.8
5,830,583	-				-0.6
5,830,583	-				+0.5
5,830,583	-				-0.6
5,830,583	-				+0.8
5,830,583	-				-1.3
5,830,583	-				+0.4
5,830,583	-				-0.6
5,830,583	-				-0.8
5,830,583	-				-0.6
5,830,583	-				-0.3
5,830,583	-				+0.3
5,830,584	+				+1.2
5,830,584	+				-0.1
5,830,585	-				+0.7
5,830,585	-				+0.5
5,830,585	-				-0.3
5,830,585	-				+0.6
5,830,585	-				-0.4
5,830,607	+				-0.1
5,830,608	-				+0.4
5,830,608	-				-0.7
5,830,608	-				-0.6
5,831,025	+				-0.5
5,831,025	+				-0.3
5,831,025	+				-1.2
5,831,130	+		PFR28_05091	0.10	-0.8
5,831,130	+		PFR28_05091	0.10	-2.1
5,831,130	+		PFR28_05091	0.10	-1.2
5,831,130	+		PFR28_05091	0.10	-1.2
5,831,131	-		PFR28_05091	0.11	-1.6
5,831,131	-		PFR28_05091	0.11	-1.8
5,831,131	-		PFR28_05091	0.11	-4.1
5,831,131	-		PFR28_05091	0.11	-3.1
5,831,131	-		PFR28_05091	0.11	-1.9
5,831,131	-		PFR28_05091	0.11	-0.1
5,831,149	-		PFR28_05091	0.11	-2.3
5,831,176	+		PFR28_05091	0.13	-0.1
5,831,176	+		PFR28_05091	0.13	-2.3
5,831,176	+		PFR28_05091	0.13	-2.5
5,831,176	+		PFR28_05091	0.13	-2.3
5,831,176	+		PFR28_05091	0.13	-0.1
5,831,176	+		PFR28_05091	0.13	-3.4
5,831,176	+		PFR28_05091	0.13	-1.8
5,831,177	-		PFR28_05091	0.13	-2.1
5,831,197	+		PFR28_05091	0.14	-1.7
5,831,197	+		PFR28_05091	0.14	-2.0
5,831,197	+		PFR28_05091	0.14	-1.0
5,831,197	+		PFR28_05091	0.14	-1.2
5,831,197	+		PFR28_05091	0.14	-1.7
5,831,197	+		PFR28_05091	0.14	-2.9
5,831,197	+		PFR28_05091	0.14	+0.7
5,831,197	+		PFR28_05091	0.14	-2.3
5,831,197	+		PFR28_05091	0.14	-3.3
5,831,198	-		PFR28_05091	0.14	-1.3
5,831,198	-		PFR28_05091	0.14	-2.1
5,831,198	-		PFR28_05091	0.14	-0.6
5,831,198	-		PFR28_05091	0.14	-2.3
5,831,198	-		PFR28_05091	0.14	-1.3
5,831,198	-		PFR28_05091	0.14	-0.1
5,831,364	+		PFR28_05091	0.23	-1.8
5,831,365	-		PFR28_05091	0.23	-2.0
5,831,400	+		PFR28_05091	0.25	-2.2
5,831,401	-		PFR28_05091	0.25	-1.9
5,831,401	-		PFR28_05091	0.25	-2.1
5,831,802	+		PFR28_05091	0.46	-0.9
5,831,803	-		PFR28_05091	0.46	-0.6
5,831,803	-		PFR28_05091	0.46	-0.1
5,831,898	+		PFR28_05091	0.51	-1.1
5,831,899	-		PFR28_05091	0.51	-2.4
5,831,899	-		PFR28_05091	0.51	-2.5
5,831,931	+		PFR28_05091	0.53	-1.6
5,831,931	+		PFR28_05091	0.53	+0.1
5,831,932	-		PFR28_05091	0.53	-1.8
5,831,932	-		PFR28_05091	0.53	-3.7
5,831,932	-		PFR28_05091	0.53	-1.2
5,831,932	-		PFR28_05091	0.53	-1.5
5,831,932	-		PFR28_05091	0.53	-1.9
5,831,932	-		PFR28_05091	0.53	-2.4
5,832,030	+		PFR28_05091	0.58	+4.2
5,832,030	+		PFR28_05091	0.58	+0.4
5,832,031	-		PFR28_05091	0.58	-3.3
5,832,031	-		PFR28_05091	0.58	-1.1
5,832,069	+		PFR28_05091	0.60	-1.4
5,832,069	+		PFR28_05091	0.60	-1.1
5,832,291	+		PFR28_05091	0.72	-1.7
5,832,291	+		PFR28_05091	0.72	-2.1
5,832,291	+		PFR28_05091	0.72	-1.0
5,832,291	+		PFR28_05091	0.72	-1.3
5,832,292	-		PFR28_05091	0.72	-1.8
5,832,292	-		PFR28_05091	0.72	-0.7
5,832,292	-		PFR28_05091	0.72	-3.6
5,832,292	-		PFR28_05091	0.72	-1.6
5,832,292	-		PFR28_05091	0.72	-1.4
5,832,396	+		PFR28_05091	0.77	-0.8
5,832,396	+		PFR28_05091	0.77	-0.9
5,832,396	+		PFR28_05091	0.77	-2.1
5,832,396	+		PFR28_05091	0.77	-1.4
5,832,396	+		PFR28_05091	0.77	-3.3
5,832,396	+		PFR28_05091	0.77	-3.2
5,832,396	+		PFR28_05091	0.77	-0.7
5,832,396	+		PFR28_05091	0.77	-0.8
5,832,396	+		PFR28_05091	0.77	-0.4
5,832,396	+		PFR28_05091	0.77	-2.1
5,832,396	+		PFR28_05091	0.77	-1.0
5,832,397	-		PFR28_05091	0.78	-2.2
5,832,397	-		PFR28_05091	0.78	-3.7
5,832,397	-		PFR28_05091	0.78	-1.6
5,832,397	-		PFR28_05091	0.78	-1.4
5,832,397	-		PFR28_05091	0.78	-1.6
5,832,397	-		PFR28_05091	0.78	-0.5
5,832,397	-		PFR28_05091	0.78	-0.9
5,832,397	-		PFR28_05091	0.78	-3.1
5,832,397	-		PFR28_05091	0.78	-1.5
5,832,462	+		PFR28_05091	0.81	-1.8
5,832,462	+		PFR28_05091	0.81	-1.9
5,832,462	+		PFR28_05091	0.81	-1.3
5,832,463	-		PFR28_05091	0.81	-1.4
5,832,463	-		PFR28_05091	0.81	-2.2
5,832,606	+		PFR28_05091	0.89	-1.0
5,832,711	+				-0.9
5,832,712	-				+0.7
5,832,808	-				-0.6
5,832,969	+				-0.5
5,832,969	+				+0.4
5,832,969	+				-1.0
5,832,969	+				+0.6
5,832,969	+				+0.4
5,832,969	+				+0.4
5,832,969	+				-0.4
5,832,969	+				-1.3
5,832,969	+				-0.5
5,832,969	+				+0.8
5,832,969	+				+0.7
5,832,969	+				+0.1
5,832,969	+				+0.0
5,832,969	+				+1.0
5,832,969	+				+0.9
5,832,970	-				+0.8
5,832,970	-				+1.4
5,832,970	-				+0.2
5,832,970	-				-0.3
5,832,970	-				-1.1
5,832,970	-				-0.0
5,832,970	-				-1.3
5,832,970	-				+1.2
5,832,970	-				+0.7
5,832,970	-				-1.9
5,832,970	-				+0.3
5,832,970	-				+0.5
5,832,982	+				-0.3
5,832,983	-				-1.9
5,833,011	+				-1.1
5,833,011	+				+0.1
5,833,011	+				-0.1
5,833,011	+				+0.8
5,833,011	+				+0.8
5,833,011	+				+0.6
5,833,011	+				-1.3
5,833,011	+				-0.5
5,833,195	+		PFR28_05092	0.16	-0.3
5,833,195	+		PFR28_05092	0.16	-0.1
5,833,669	-		PFR28_05092	0.53	-0.6
5,833,733	+		PFR28_05092	0.57	+0.3
5,833,734	-		PFR28_05092	0.58	-1.7
5,833,764	+		PFR28_05092	0.60	-0.8
5,833,764	+		PFR28_05092	0.60	+1.6
5,833,764	+		PFR28_05092	0.60	-0.7
5,833,764	+		PFR28_05092	0.60	+0.8
5,833,764	+		PFR28_05092	0.60	+1.0
5,833,807	+		PFR28_05092	0.63	+1.3
5,833,807	+		PFR28_05092	0.63	+0.1
5,833,807	+		PFR28_05092	0.63	-0.1
5,833,807	+		PFR28_05092	0.63	-0.2