Strain Fitness in Pseudomonas sp. RS175 around PFR28_05005

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_05004 and PFR28_05005 are separated by 180 nucleotidesPFR28_05005 and PFR28_05006 are separated by 780 nucleotides PFR28_05004: PFR28_05004 - hypothetical protein, at 5,706,361 to 5,707,176 _05004 PFR28_05005: PFR28_05005 - NADP-dependent malic enzyme, at 5,707,357 to 5,708,625 _05005 PFR28_05006: PFR28_05006 - Penicillin-binding protein 1A, at 5,709,406 to 5,711,973 _05006 Position (kb) 5707 5708 5709Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5706.697 kb on + strand, within PFR28_05004at 5706.698 kb on - strand, within PFR28_05004at 5706.721 kb on + strand, within PFR28_05004at 5706.721 kb on + strand, within PFR28_05004at 5706.721 kb on + strand, within PFR28_05004at 5706.721 kb on + strand, within PFR28_05004at 5706.721 kb on + strand, within PFR28_05004at 5706.721 kb on + strand, within PFR28_05004at 5706.721 kb on + strand, within PFR28_05004at 5706.722 kb on - strand, within PFR28_05004at 5706.722 kb on - strand, within PFR28_05004at 5706.739 kb on - strand, within PFR28_05004at 5706.989 kb on + strand, within PFR28_05004at 5706.990 kb on - strand, within PFR28_05004at 5706.990 kb on - strand, within PFR28_05004at 5706.990 kb on - strand, within PFR28_05004at 5706.990 kb on - strand, within PFR28_05004at 5707.288 kb on + strandat 5707.289 kb on - strandat 5707.338 kb on + strandat 5707.396 kb on - strandat 5707.468 kb on + strandat 5707.468 kb on + strandat 5707.525 kb on + strand, within PFR28_05005at 5707.526 kb on - strand, within PFR28_05005at 5707.526 kb on - strand, within PFR28_05005at 5707.531 kb on + strand, within PFR28_05005at 5707.531 kb on + strand, within PFR28_05005at 5707.531 kb on + strand, within PFR28_05005at 5707.532 kb on - strand, within PFR28_05005at 5707.532 kb on - strand, within PFR28_05005at 5707.728 kb on + strand, within PFR28_05005at 5707.728 kb on + strand, within PFR28_05005at 5707.728 kb on + strand, within PFR28_05005at 5707.729 kb on - strand, within PFR28_05005at 5707.729 kb on - strand, within PFR28_05005at 5707.729 kb on - strand, within PFR28_05005at 5707.872 kb on + strand, within PFR28_05005at 5707.873 kb on - strand, within PFR28_05005at 5708.056 kb on + strand, within PFR28_05005at 5708.056 kb on + strand, within PFR28_05005at 5708.056 kb on + strand, within PFR28_05005at 5708.056 kb on + strand, within PFR28_05005at 5708.056 kb on + strand, within PFR28_05005at 5708.057 kb on - strand, within PFR28_05005at 5708.057 kb on - strand, within PFR28_05005at 5708.057 kb on - strand, within PFR28_05005at 5708.057 kb on - strand, within PFR28_05005at 5708.309 kb on + strand, within PFR28_05005at 5708.309 kb on + strand, within PFR28_05005at 5708.309 kb on + strand, within PFR28_05005at 5708.310 kb on - strand, within PFR28_05005at 5708.310 kb on - strand, within PFR28_05005at 5708.310 kb on - strand, within PFR28_05005at 5708.348 kb on + strand, within PFR28_05005at 5708.479 kb on + strand, within PFR28_05005at 5708.479 kb on + strand, within PFR28_05005at 5708.479 kb on + strand, within PFR28_05005at 5708.479 kb on + strand, within PFR28_05005at 5708.479 kb on + strand, within PFR28_05005at 5708.479 kb on + strand, within PFR28_05005at 5708.479 kb on + strand, within PFR28_05005at 5708.480 kb on - strand, within PFR28_05005at 5708.480 kb on - strand, within PFR28_05005at 5708.480 kb on - strand, within PFR28_05005at 5708.480 kb on - strand, within PFR28_05005at 5708.480 kb on - strand, within PFR28_05005at 5708.480 kb on - strand, within PFR28_05005at 5708.480 kb on - strand, within PFR28_05005at 5708.480 kb on - strand, within PFR28_05005at 5708.480 kb on - strand, within PFR28_05005at 5708.496 kb on + strand, within PFR28_05005at 5708.496 kb on + strand, within PFR28_05005at 5708.496 kb on + strand, within PFR28_05005at 5708.497 kb on - strand, within PFR28_05005at 5708.497 kb on - strand, within PFR28_05005at 5708.497 kb on - strand, within PFR28_05005at 5708.497 kb on - strand, within PFR28_05005at 5708.497 kb on - strand, within PFR28_05005at 5708.497 kb on - strand, within PFR28_05005at 5708.497 kb on - strand, within PFR28_05005at 5708.497 kb on - strand, within PFR28_05005at 5708.623 kb on + strandat 5708.714 kb on + strandat 5708.780 kb on + strandat 5708.782 kb on + strandat 5708.814 kb on + strandat 5708.841 kb on + strandat 5708.871 kb on + strandat 5708.872 kb on - strandat 5708.921 kb on - strandat 5708.921 kb on - strandat 5708.921 kb on - strandat 5708.921 kb on - strandat 5708.921 kb on - strandat 5708.933 kb on - strandat 5708.986 kb on - strandat 5709.073 kb on + strandat 5709.073 kb on + strandat 5709.074 kb on - strandat 5709.074 kb on - strandat 5709.203 kb on - strandat 5709.204 kb on + strandat 5709.279 kb on + strandat 5709.279 kb on + strandat 5709.280 kb on - strandat 5709.354 kb on + strandat 5709.399 kb on + strandat 5709.399 kb on + strandat 5709.399 kb on + strandat 5709.399 kb on + strandat 5709.399 kb on + strandat 5709.399 kb on + strandat 5709.399 kb on + strandat 5709.400 kb on - strandat 5709.400 kb on - strandat 5709.400 kb on - strandat 5709.521 kb on + strandat 5709.521 kb on + strandat 5709.522 kb on - strandat 5709.522 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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5,706,697 + PFR28_05004 0.41 -0.8
5,706,698 - PFR28_05004 0.41 -0.2
5,706,721 + PFR28_05004 0.44 -1.7
5,706,721 + PFR28_05004 0.44 -1.2
5,706,721 + PFR28_05004 0.44 -2.6
5,706,721 + PFR28_05004 0.44 +0.3
5,706,721 + PFR28_05004 0.44 -0.3
5,706,721 + PFR28_05004 0.44 +0.1
5,706,721 + PFR28_05004 0.44 -0.8
5,706,722 - PFR28_05004 0.44 -2.8
5,706,722 - PFR28_05004 0.44 -0.0
5,706,739 - PFR28_05004 0.46 -2.9
5,706,989 + PFR28_05004 0.77 -1.7
5,706,990 - PFR28_05004 0.77 -0.2
5,706,990 - PFR28_05004 0.77 +0.6
5,706,990 - PFR28_05004 0.77 +0.9
5,706,990 - PFR28_05004 0.77 +1.4
5,707,288 + -0.5
5,707,289 - -0.6
5,707,338 + +1.4
5,707,396 - -1.3
5,707,468 + +0.2
5,707,468 + -1.4
5,707,525 + PFR28_05005 0.13 -1.7
5,707,526 - PFR28_05005 0.13 -0.6
5,707,526 - PFR28_05005 0.13 -0.3
5,707,531 + PFR28_05005 0.14 -0.3
5,707,531 + PFR28_05005 0.14 -1.2
5,707,531 + PFR28_05005 0.14 +1.0
5,707,532 - PFR28_05005 0.14 -1.3
5,707,532 - PFR28_05005 0.14 -0.6
5,707,728 + PFR28_05005 0.29 -3.1
5,707,728 + PFR28_05005 0.29 -0.6
5,707,728 + PFR28_05005 0.29 -1.9
5,707,729 - PFR28_05005 0.29 +0.0
5,707,729 - PFR28_05005 0.29 -1.6
5,707,729 - PFR28_05005 0.29 -1.4
5,707,872 + PFR28_05005 0.41 +0.2
5,707,873 - PFR28_05005 0.41 -0.6
5,708,056 + PFR28_05005 0.55 -0.7
5,708,056 + PFR28_05005 0.55 -2.5
5,708,056 + PFR28_05005 0.55 +1.1
5,708,056 + PFR28_05005 0.55 -1.7
5,708,056 + PFR28_05005 0.55 -0.5
5,708,057 - PFR28_05005 0.55 -2.4
5,708,057 - PFR28_05005 0.55 -1.8
5,708,057 - PFR28_05005 0.55 -1.8
5,708,057 - PFR28_05005 0.55 -2.2
5,708,309 + PFR28_05005 0.75 +0.6
5,708,309 + PFR28_05005 0.75 -1.6
5,708,309 + PFR28_05005 0.75 -0.9
5,708,310 - PFR28_05005 0.75 -2.5
5,708,310 - PFR28_05005 0.75 -1.8
5,708,310 - PFR28_05005 0.75 -2.4
5,708,348 + PFR28_05005 0.78 -0.2
5,708,479 + PFR28_05005 0.88 -2.5
5,708,479 + PFR28_05005 0.88 -2.2
5,708,479 + PFR28_05005 0.88 -0.6
5,708,479 + PFR28_05005 0.88 +0.4
5,708,479 + PFR28_05005 0.88 -1.4
5,708,479 + PFR28_05005 0.88 +3.0
5,708,479 + PFR28_05005 0.88 -1.6
5,708,480 - PFR28_05005 0.88 -0.2
5,708,480 - PFR28_05005 0.88 -0.5
5,708,480 - PFR28_05005 0.88 +1.4
5,708,480 - PFR28_05005 0.88 -0.6
5,708,480 - PFR28_05005 0.88 -1.6
5,708,480 - PFR28_05005 0.88 +1.9
5,708,480 - PFR28_05005 0.88 +0.4
5,708,480 - PFR28_05005 0.88 -0.9
5,708,480 - PFR28_05005 0.88 +0.2
5,708,496 + PFR28_05005 0.90 -0.2
5,708,496 + PFR28_05005 0.90 -1.8
5,708,496 + PFR28_05005 0.90 -0.9
5,708,497 - PFR28_05005 0.90 +0.2
5,708,497 - PFR28_05005 0.90 -2.3
5,708,497 - PFR28_05005 0.90 -0.6
5,708,497 - PFR28_05005 0.90 -2.3
5,708,497 - PFR28_05005 0.90 -0.0
5,708,497 - PFR28_05005 0.90 -1.3
5,708,497 - PFR28_05005 0.90 -1.8
5,708,497 - PFR28_05005 0.90 -4.2
5,708,623 + +1.4
5,708,714 + +1.6
5,708,780 + +1.0
5,708,782 + -0.6
5,708,814 + +1.0
5,708,841 + +0.2
5,708,871 + -1.8
5,708,872 - -0.8
5,708,921 - +0.4
5,708,921 - +1.9
5,708,921 - -0.6
5,708,921 - -0.5
5,708,921 - -0.3
5,708,933 - -0.6
5,708,986 - -0.8
5,709,073 + -2.9
5,709,073 + +0.9
5,709,074 - -1.1
5,709,074 - -0.0
5,709,203 - -0.1
5,709,204 + +0.2
5,709,279 + +0.3
5,709,279 + -0.0
5,709,280 - +0.9
5,709,354 + -0.4
5,709,399 + +0.4
5,709,399 + -0.2
5,709,399 + +0.1
5,709,399 + +0.8
5,709,399 + +2.2
5,709,399 + +0.5
5,709,399 + -0.1
5,709,400 - +0.0
5,709,400 - -0.5
5,709,400 - -0.0
5,709,521 + +0.1
5,709,521 + -1.2
5,709,522 - +0.2
5,709,522 - -1.0

Or see this region's nucleotide sequence