Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04990 and PFR28_04991 are separated by 266 nucleotides PFR28_04991 and PFR28_04992 are separated by 10 nucleotides PFR28_04992 and PFR28_04993 are separated by 98 nucleotides PFR28_04993 and PFR28_04994 are separated by 57 nucleotides
PFR28_04990: PFR28_04990 - hypothetical protein, at 5,690,929 to 5,691,204
_04990
PFR28_04991: PFR28_04991 - hypothetical protein, at 5,691,471 to 5,691,893
_04991
PFR28_04992: PFR28_04992 - hypothetical protein, at 5,691,904 to 5,692,821
_04992
PFR28_04993: PFR28_04993 - hypothetical protein, at 5,692,920 to 5,693,540
_04993
PFR28_04994: PFR28_04994 - Poly(3-hydroxyalkanoate) polymerase subunit PhaC, at 5,693,598 to 5,695,280
_04994
Position (kb) 5691
5692
5693 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5690.937 kb on + strand at 5690.937 kb on + strand at 5690.937 kb on + strand at 5690.938 kb on - strand at 5690.938 kb on - strand at 5690.938 kb on - strand at 5690.938 kb on - strand at 5690.938 kb on - strand at 5690.938 kb on - strand at 5690.938 kb on - strand at 5691.022 kb on + strand, within PFR28_04990 at 5691.022 kb on + strand, within PFR28_04990 at 5691.022 kb on + strand, within PFR28_04990 at 5691.095 kb on + strand, within PFR28_04990 at 5691.095 kb on + strand, within PFR28_04990 at 5691.095 kb on + strand, within PFR28_04990 at 5691.095 kb on + strand, within PFR28_04990 at 5691.095 kb on + strand, within PFR28_04990 at 5691.096 kb on - strand, within PFR28_04990 at 5691.096 kb on - strand, within PFR28_04990 at 5691.189 kb on + strand at 5691.392 kb on + strand at 5691.396 kb on + strand at 5691.396 kb on + strand at 5691.397 kb on - strand at 5691.397 kb on - strand at 5691.397 kb on - strand at 5691.405 kb on + strand at 5691.405 kb on + strand at 5691.406 kb on - strand at 5691.537 kb on + strand, within PFR28_04991 at 5691.573 kb on + strand, within PFR28_04991 at 5691.573 kb on + strand, within PFR28_04991 at 5691.574 kb on - strand, within PFR28_04991 at 5691.574 kb on - strand, within PFR28_04991 at 5691.574 kb on - strand, within PFR28_04991 at 5691.574 kb on - strand, within PFR28_04991 at 5691.597 kb on - strand, within PFR28_04991 at 5691.604 kb on - strand, within PFR28_04991 at 5691.687 kb on - strand, within PFR28_04991 at 5691.720 kb on - strand, within PFR28_04991 at 5691.766 kb on + strand, within PFR28_04991 at 5691.800 kb on + strand, within PFR28_04991 at 5691.965 kb on - strand at 5692.001 kb on - strand, within PFR28_04992 at 5692.549 kb on - strand, within PFR28_04992 at 5692.807 kb on - strand at 5692.939 kb on + strand at 5692.940 kb on - strand at 5692.940 kb on - strand at 5692.996 kb on - strand, within PFR28_04993 at 5692.996 kb on - strand, within PFR28_04993 at 5693.014 kb on + strand, within PFR28_04993 at 5693.059 kb on + strand, within PFR28_04993 at 5693.059 kb on + strand, within PFR28_04993 at 5693.059 kb on + strand, within PFR28_04993 at 5693.060 kb on - strand, within PFR28_04993 at 5693.120 kb on + strand, within PFR28_04993 at 5693.308 kb on + strand, within PFR28_04993 at 5693.309 kb on - strand, within PFR28_04993 at 5693.419 kb on + strand, within PFR28_04993 at 5693.419 kb on + strand, within PFR28_04993 at 5693.420 kb on - strand, within PFR28_04993 at 5693.420 kb on - strand, within PFR28_04993 at 5693.420 kb on - strand, within PFR28_04993 at 5693.422 kb on + strand, within PFR28_04993 at 5693.610 kb on + strand at 5693.610 kb on + strand at 5693.610 kb on + strand at 5693.610 kb on + strand at 5693.610 kb on + strand at 5693.610 kb on + strand at 5693.610 kb on + strand at 5693.610 kb on + strand at 5693.610 kb on + strand at 5693.610 kb on + strand at 5693.610 kb on + strand at 5693.610 kb on + strand at 5693.610 kb on + strand at 5693.610 kb on + strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.611 kb on - strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.614 kb on + strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.615 kb on - strand at 5693.644 kb on + strand at 5693.644 kb on + strand at 5693.752 kb on + strand at 5693.752 kb on + strand at 5693.752 kb on + strand at 5693.752 kb on + strand at 5693.752 kb on + strand at 5693.752 kb on + strand at 5693.752 kb on + strand at 5693.753 kb on - strand at 5693.753 kb on - strand at 5693.753 kb on - strand at 5693.755 kb on + strand at 5693.755 kb on + strand at 5693.756 kb on - strand at 5693.756 kb on - strand at 5693.797 kb on + strand, within PFR28_04994 at 5693.797 kb on + strand, within PFR28_04994 at 5693.797 kb on + strand, within PFR28_04994 at 5693.797 kb on + strand, within PFR28_04994 at 5693.797 kb on + strand, within PFR28_04994 at 5693.797 kb on + strand, within PFR28_04994 at 5693.797 kb on + strand, within PFR28_04994 at 5693.798 kb on - strand, within PFR28_04994 at 5693.798 kb on - strand, within PFR28_04994 at 5693.798 kb on - strand, within PFR28_04994 at 5693.798 kb on - strand, within PFR28_04994 at 5693.798 kb on - strand, within PFR28_04994 at 5693.798 kb on - strand, within PFR28_04994 at 5693.798 kb on - strand, within PFR28_04994 at 5693.798 kb on - strand, within PFR28_04994
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 5,690,937 + -0.1 5,690,937 + +0.7 5,690,937 + +0.2 5,690,938 - +1.6 5,690,938 - +1.6 5,690,938 - +0.6 5,690,938 - +0.7 5,690,938 - -3.2 5,690,938 - -1.5 5,690,938 - -2.5 5,691,022 + PFR28_04990 0.34 -0.9 5,691,022 + PFR28_04990 0.34 -1.2 5,691,022 + PFR28_04990 0.34 -0.5 5,691,095 + PFR28_04990 0.60 -0.4 5,691,095 + PFR28_04990 0.60 +0.2 5,691,095 + PFR28_04990 0.60 +0.1 5,691,095 + PFR28_04990 0.60 +0.6 5,691,095 + PFR28_04990 0.60 +0.2 5,691,096 - PFR28_04990 0.61 +0.1 5,691,096 - PFR28_04990 0.61 -0.7 5,691,189 + +0.3 5,691,392 + +0.5 5,691,396 + -0.4 5,691,396 + +1.8 5,691,397 - +0.3 5,691,397 - +0.8 5,691,397 - -0.4 5,691,405 + -0.0 5,691,405 + -0.0 5,691,406 - -0.2 5,691,537 + PFR28_04991 0.16 -1.3 5,691,573 + PFR28_04991 0.24 -2.1 5,691,573 + PFR28_04991 0.24 +0.2 5,691,574 - PFR28_04991 0.24 -1.7 5,691,574 - PFR28_04991 0.24 -0.1 5,691,574 - PFR28_04991 0.24 -0.4 5,691,574 - PFR28_04991 0.24 -0.4 5,691,597 - PFR28_04991 0.30 +1.1 5,691,604 - PFR28_04991 0.31 +0.1 5,691,687 - PFR28_04991 0.51 -0.4 5,691,720 - PFR28_04991 0.59 -0.3 5,691,766 + PFR28_04991 0.70 -0.1 5,691,800 + PFR28_04991 0.78 -0.1 5,691,965 - -0.9 5,692,001 - PFR28_04992 0.11 -1.1 5,692,549 - PFR28_04992 0.70 -1.2 5,692,807 - -0.5 5,692,939 + +0.4 5,692,940 - +0.2 5,692,940 - +0.4 5,692,996 - PFR28_04993 0.12 +1.1 5,692,996 - PFR28_04993 0.12 +0.9 5,693,014 + PFR28_04993 0.15 -0.6 5,693,059 + PFR28_04993 0.22 -0.2 5,693,059 + PFR28_04993 0.22 +0.4 5,693,059 + PFR28_04993 0.22 +0.2 5,693,060 - PFR28_04993 0.23 -0.7 5,693,120 + PFR28_04993 0.32 -0.8 5,693,308 + PFR28_04993 0.62 -1.3 5,693,309 - PFR28_04993 0.63 +0.3 5,693,419 + PFR28_04993 0.80 +0.3 5,693,419 + PFR28_04993 0.80 -0.7 5,693,420 - PFR28_04993 0.81 +0.4 5,693,420 - PFR28_04993 0.81 -0.9 5,693,420 - PFR28_04993 0.81 -0.3 5,693,422 + PFR28_04993 0.81 -1.6 5,693,610 + +0.3 5,693,610 + +1.0 5,693,610 + +0.3 5,693,610 + -0.2 5,693,610 + -1.4 5,693,610 + -1.3 5,693,610 + -1.1 5,693,610 + -2.8 5,693,610 + -0.6 5,693,610 + -0.3 5,693,610 + +0.6 5,693,610 + +0.2 5,693,610 + -0.3 5,693,610 + -0.8 5,693,611 - +0.1 5,693,611 - +0.0 5,693,611 - -0.1 5,693,611 - +0.8 5,693,611 - -1.9 5,693,611 - +0.4 5,693,611 - -0.0 5,693,611 - -0.2 5,693,611 - -2.1 5,693,611 - -0.7 5,693,611 - -0.5 5,693,611 - +0.8 5,693,611 - +2.1 5,693,611 - -0.1 5,693,611 - +0.1 5,693,611 - -0.7 5,693,611 - -0.3 5,693,611 - -0.6 5,693,614 + +0.5 5,693,614 + +0.8 5,693,614 + -1.3 5,693,614 + +1.1 5,693,614 + -0.4 5,693,614 + +1.0 5,693,614 + -0.4 5,693,614 + +0.6 5,693,614 + +1.3 5,693,614 + -0.6 5,693,614 + +0.2 5,693,614 + +0.0 5,693,614 + +1.0 5,693,614 + +0.4 5,693,614 + -0.2 5,693,614 + -0.3 5,693,614 + +0.0 5,693,614 + -1.2 5,693,614 + -1.7 5,693,615 - -1.3 5,693,615 - +1.8 5,693,615 - +0.8 5,693,615 - +0.2 5,693,615 - -0.3 5,693,615 - +1.1 5,693,615 - -0.9 5,693,615 - -0.9 5,693,615 - +2.4 5,693,615 - +0.9 5,693,615 - +1.2 5,693,615 - -0.2 5,693,615 - -0.6 5,693,615 - +0.4 5,693,615 - -3.6 5,693,615 - -0.1 5,693,615 - -1.0 5,693,615 - +0.7 5,693,615 - +0.5 5,693,615 - +0.5 5,693,615 - -0.7 5,693,615 - +0.5 5,693,615 - -1.3 5,693,644 + +0.7 5,693,644 + -0.4 5,693,752 + -1.4 5,693,752 + -1.4 5,693,752 + -0.4 5,693,752 + -0.1 5,693,752 + -1.1 5,693,752 + +0.0 5,693,752 + +0.6 5,693,753 - -0.2 5,693,753 - +0.1 5,693,753 - +1.9 5,693,755 + -0.3 5,693,755 + -0.5 5,693,756 - -0.7 5,693,756 - +0.2 5,693,797 + PFR28_04994 0.12 -0.2 5,693,797 + PFR28_04994 0.12 -1.3 5,693,797 + PFR28_04994 0.12 -0.3 5,693,797 + PFR28_04994 0.12 +0.9 5,693,797 + PFR28_04994 0.12 +1.0 5,693,797 + PFR28_04994 0.12 -0.2 5,693,797 + PFR28_04994 0.12 -0.4 5,693,798 - PFR28_04994 0.12 +0.6 5,693,798 - PFR28_04994 0.12 -0.2 5,693,798 - PFR28_04994 0.12 -0.2 5,693,798 - PFR28_04994 0.12 -3.4 5,693,798 - PFR28_04994 0.12 -3.0 5,693,798 - PFR28_04994 0.12 +0.7 5,693,798 - PFR28_04994 0.12 +0.4 5,693,798 - PFR28_04994 0.12 -0.8
Or see this region's nucleotide sequence