Strain Fitness in Pseudomonas sp. RS175 around PFR28_04933

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04931 and PFR28_04932 are separated by 42 nucleotidesPFR28_04932 and PFR28_04933 are separated by 9 nucleotidesPFR28_04933 and PFR28_04934 are separated by 63 nucleotidesPFR28_04934 and PFR28_04935 are separated by 72 nucleotides PFR28_04931: PFR28_04931 - hypothetical protein, at 5,624,231 to 5,624,485 _04931 PFR28_04932: PFR28_04932 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 5,624,528 to 5,625,265 _04932 PFR28_04933: PFR28_04933 - Imidazole glycerol phosphate synthase subunit HisF, at 5,625,275 to 5,626,045 _04933 PFR28_04934: PFR28_04934 - hypothetical protein, at 5,626,109 to 5,626,855 _04934 PFR28_04935: PFR28_04935 - hypothetical protein, at 5,626,928 to 5,627,710 _04935 Position (kb) 5625 5626 5627Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5624.394 kb on - strand, within PFR28_04931at 5624.394 kb on - strand, within PFR28_04931at 5624.396 kb on + strand, within PFR28_04931at 5624.396 kb on + strand, within PFR28_04931at 5624.431 kb on + strand, within PFR28_04931at 5624.431 kb on + strand, within PFR28_04931at 5624.432 kb on - strand, within PFR28_04931at 5624.537 kb on - strandat 5624.571 kb on + strandat 5624.571 kb on + strandat 5624.571 kb on + strandat 5624.804 kb on + strand, within PFR28_04932at 5624.804 kb on + strand, within PFR28_04932at 5624.805 kb on - strand, within PFR28_04932at 5624.805 kb on - strand, within PFR28_04932at 5624.805 kb on - strand, within PFR28_04932at 5624.805 kb on - strand, within PFR28_04932at 5624.825 kb on + strand, within PFR28_04932at 5624.825 kb on + strand, within PFR28_04932at 5624.825 kb on + strand, within PFR28_04932at 5624.826 kb on - strand, within PFR28_04932at 5624.826 kb on - strand, within PFR28_04932at 5625.024 kb on - strand, within PFR28_04932at 5625.206 kb on + strandat 5625.206 kb on + strandat 5625.206 kb on + strandat 5625.206 kb on + strandat 5625.207 kb on - strandat 5625.207 kb on - strandat 5625.207 kb on - strandat 5625.207 kb on - strandat 5625.207 kb on - strandat 5625.207 kb on - strandat 5625.254 kb on + strandat 5625.255 kb on - strandat 5625.255 kb on - strandat 5625.255 kb on - strandat 5625.457 kb on + strand, within PFR28_04933at 5625.469 kb on + strand, within PFR28_04933at 5625.470 kb on - strand, within PFR28_04933at 5625.470 kb on - strand, within PFR28_04933at 5625.989 kb on + strandat 5625.989 kb on + strandat 5625.990 kb on - strandat 5625.990 kb on - strandat 5625.990 kb on - strandat 5626.013 kb on + strandat 5626.013 kb on + strandat 5626.013 kb on + strandat 5626.013 kb on + strandat 5626.013 kb on + strandat 5626.013 kb on + strandat 5626.013 kb on + strandat 5626.013 kb on + strandat 5626.014 kb on - strandat 5626.014 kb on - strandat 5626.014 kb on - strandat 5626.014 kb on - strandat 5626.014 kb on - strandat 5626.153 kb on - strandat 5626.153 kb on - strandat 5626.153 kb on - strandat 5626.217 kb on + strand, within PFR28_04934at 5626.218 kb on - strand, within PFR28_04934at 5626.218 kb on - strand, within PFR28_04934at 5626.355 kb on + strand, within PFR28_04934at 5626.355 kb on + strand, within PFR28_04934at 5626.355 kb on + strand, within PFR28_04934at 5626.355 kb on + strand, within PFR28_04934at 5626.355 kb on + strand, within PFR28_04934at 5626.356 kb on - strand, within PFR28_04934at 5626.356 kb on - strand, within PFR28_04934at 5626.356 kb on - strand, within PFR28_04934at 5626.356 kb on - strand, within PFR28_04934at 5626.356 kb on - strand, within PFR28_04934at 5626.356 kb on - strand, within PFR28_04934at 5626.356 kb on - strand, within PFR28_04934at 5626.356 kb on - strand, within PFR28_04934at 5626.357 kb on + strand, within PFR28_04934at 5626.358 kb on - strand, within PFR28_04934at 5626.382 kb on + strand, within PFR28_04934at 5626.383 kb on - strand, within PFR28_04934at 5626.524 kb on - strand, within PFR28_04934at 5626.538 kb on + strand, within PFR28_04934at 5626.538 kb on + strand, within PFR28_04934at 5626.539 kb on - strand, within PFR28_04934at 5626.539 kb on - strand, within PFR28_04934at 5626.540 kb on + strand, within PFR28_04934at 5626.540 kb on + strand, within PFR28_04934at 5626.541 kb on - strand, within PFR28_04934at 5626.541 kb on - strand, within PFR28_04934at 5626.742 kb on + strand, within PFR28_04934at 5626.742 kb on + strand, within PFR28_04934at 5626.742 kb on + strand, within PFR28_04934at 5626.742 kb on + strand, within PFR28_04934at 5626.742 kb on + strand, within PFR28_04934at 5626.743 kb on - strand, within PFR28_04934at 5626.743 kb on - strand, within PFR28_04934at 5626.743 kb on - strand, within PFR28_04934at 5626.743 kb on - strand, within PFR28_04934at 5626.743 kb on - strand, within PFR28_04934at 5626.743 kb on - strand, within PFR28_04934at 5626.916 kb on - strandat 5626.916 kb on - strandat 5627.036 kb on + strand, within PFR28_04935at 5627.037 kb on - strand, within PFR28_04935at 5627.037 kb on - strand, within PFR28_04935

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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5,624,394 - PFR28_04931 0.64 -2.6
5,624,394 - PFR28_04931 0.64 -3.9
5,624,396 + PFR28_04931 0.65 +1.0
5,624,396 + PFR28_04931 0.65 +0.5
5,624,431 + PFR28_04931 0.78 +0.4
5,624,431 + PFR28_04931 0.78 -0.3
5,624,432 - PFR28_04931 0.79 -4.2
5,624,537 - -1.4
5,624,571 + -3.2
5,624,571 + -4.5
5,624,571 + -2.8
5,624,804 + PFR28_04932 0.37 -3.4
5,624,804 + PFR28_04932 0.37 -4.7
5,624,805 - PFR28_04932 0.38 -4.4
5,624,805 - PFR28_04932 0.38 -4.4
5,624,805 - PFR28_04932 0.38 -3.8
5,624,805 - PFR28_04932 0.38 -1.4
5,624,825 + PFR28_04932 0.40 -1.2
5,624,825 + PFR28_04932 0.40 -1.2
5,624,825 + PFR28_04932 0.40 -1.2
5,624,826 - PFR28_04932 0.40 -3.6
5,624,826 - PFR28_04932 0.40 -3.2
5,625,024 - PFR28_04932 0.67 -2.0
5,625,206 + -1.9
5,625,206 + -3.8
5,625,206 + -3.7
5,625,206 + -3.6
5,625,207 - -3.9
5,625,207 - -4.0
5,625,207 - -3.7
5,625,207 - -2.9
5,625,207 - -3.6
5,625,207 - -1.3
5,625,254 + -3.4
5,625,255 - -0.2
5,625,255 - -3.0
5,625,255 - -2.6
5,625,457 + PFR28_04933 0.24 -2.5
5,625,469 + PFR28_04933 0.25 +0.4
5,625,470 - PFR28_04933 0.25 -1.9
5,625,470 - PFR28_04933 0.25 -1.7
5,625,989 + +0.4
5,625,989 + -2.7
5,625,990 - -2.7
5,625,990 - -1.2
5,625,990 - -3.1
5,626,013 + -3.5
5,626,013 + -0.9
5,626,013 + -4.1
5,626,013 + -3.7
5,626,013 + -4.6
5,626,013 + -4.0
5,626,013 + -3.6
5,626,013 + -2.3
5,626,014 - -2.5
5,626,014 - -3.3
5,626,014 - -3.2
5,626,014 - -0.9
5,626,014 - -3.5
5,626,153 - -0.9
5,626,153 - -2.7
5,626,153 - +0.3
5,626,217 + PFR28_04934 0.14 -0.9
5,626,218 - PFR28_04934 0.15 -1.1
5,626,218 - PFR28_04934 0.15 +0.6
5,626,355 + PFR28_04934 0.33 +0.2
5,626,355 + PFR28_04934 0.33 -0.5
5,626,355 + PFR28_04934 0.33 -1.2
5,626,355 + PFR28_04934 0.33 +0.0
5,626,355 + PFR28_04934 0.33 -1.9
5,626,356 - PFR28_04934 0.33 +0.3
5,626,356 - PFR28_04934 0.33 -0.4
5,626,356 - PFR28_04934 0.33 -0.3
5,626,356 - PFR28_04934 0.33 -0.7
5,626,356 - PFR28_04934 0.33 -0.7
5,626,356 - PFR28_04934 0.33 -1.2
5,626,356 - PFR28_04934 0.33 +0.3
5,626,356 - PFR28_04934 0.33 -0.3
5,626,357 + PFR28_04934 0.33 -0.9
5,626,358 - PFR28_04934 0.33 -1.2
5,626,382 + PFR28_04934 0.37 +2.4
5,626,383 - PFR28_04934 0.37 -0.0
5,626,524 - PFR28_04934 0.56 -0.7
5,626,538 + PFR28_04934 0.57 -2.0
5,626,538 + PFR28_04934 0.57 -1.0
5,626,539 - PFR28_04934 0.58 -0.4
5,626,539 - PFR28_04934 0.58 +0.4
5,626,540 + PFR28_04934 0.58 -0.8
5,626,540 + PFR28_04934 0.58 +0.4
5,626,541 - PFR28_04934 0.58 +0.6
5,626,541 - PFR28_04934 0.58 -0.6
5,626,742 + PFR28_04934 0.85 -0.2
5,626,742 + PFR28_04934 0.85 +0.2
5,626,742 + PFR28_04934 0.85 -0.1
5,626,742 + PFR28_04934 0.85 -0.3
5,626,742 + PFR28_04934 0.85 -1.4
5,626,743 - PFR28_04934 0.85 +1.1
5,626,743 - PFR28_04934 0.85 -0.3
5,626,743 - PFR28_04934 0.85 +0.0
5,626,743 - PFR28_04934 0.85 +0.0
5,626,743 - PFR28_04934 0.85 -0.4
5,626,743 - PFR28_04934 0.85 -0.2
5,626,916 - +0.7
5,626,916 - -0.4
5,627,036 + PFR28_04935 0.14 +0.2
5,627,037 - PFR28_04935 0.14 -1.2
5,627,037 - PFR28_04935 0.14 -0.6

Or see this region's nucleotide sequence