Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04626 and PFR28_04627 are separated by 46 nucleotides PFR28_04627 and PFR28_04628 are separated by 195 nucleotides PFR28_04628 and PFR28_04629 are separated by 16 nucleotides PFR28_04629 and PFR28_04630 overlap by 4 nucleotides
PFR28_04626: PFR28_04626 - hypothetical protein, at 5,282,706 to 5,282,996
_04626
PFR28_04627: PFR28_04627 - Cytochrome c4, at 5,283,043 to 5,283,654
_04627
PFR28_04628: PFR28_04628 - Thiol:disulfide interchange protein DsbA, at 5,283,850 to 5,284,491
_04628
PFR28_04629: PFR28_04629 - hypothetical protein, at 5,284,508 to 5,285,386
_04629
PFR28_04630: PFR28_04630 - hypothetical protein, at 5,285,383 to 5,287,386
_04630
Position (kb) 5283
5284
5285 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5282.879 kb on + strand, within PFR28_04626 at 5282.880 kb on - strand, within PFR28_04626 at 5282.880 kb on - strand, within PFR28_04626 at 5282.880 kb on - strand, within PFR28_04626 at 5283.007 kb on + strand at 5283.007 kb on + strand at 5283.007 kb on + strand at 5283.007 kb on + strand at 5283.007 kb on + strand at 5283.028 kb on + strand at 5283.029 kb on - strand at 5283.029 kb on - strand at 5283.709 kb on + strand at 5283.709 kb on + strand at 5283.710 kb on - strand at 5283.772 kb on + strand at 5283.772 kb on + strand at 5283.777 kb on + strand at 5283.778 kb on - strand at 5283.778 kb on - strand at 5283.778 kb on - strand at 5283.831 kb on + strand at 5283.831 kb on + strand at 5283.831 kb on + strand at 5283.831 kb on + strand at 5283.831 kb on + strand at 5283.831 kb on + strand at 5283.831 kb on + strand at 5283.831 kb on + strand at 5283.831 kb on + strand at 5283.831 kb on + strand at 5283.831 kb on + strand at 5283.831 kb on + strand at 5283.831 kb on + strand at 5283.832 kb on - strand at 5283.832 kb on - strand at 5283.832 kb on - strand at 5283.832 kb on - strand at 5283.832 kb on - strand at 5283.832 kb on - strand at 5283.832 kb on - strand at 5283.832 kb on - strand at 5283.832 kb on - strand at 5283.832 kb on - strand at 5283.832 kb on - strand at 5283.844 kb on + strand at 5283.844 kb on + strand at 5283.844 kb on + strand at 5283.845 kb on - strand at 5283.855 kb on + strand at 5283.856 kb on - strand at 5283.856 kb on - strand at 5283.937 kb on + strand, within PFR28_04628 at 5283.937 kb on + strand, within PFR28_04628 at 5283.938 kb on - strand, within PFR28_04628 at 5284.024 kb on + strand, within PFR28_04628 at 5284.388 kb on - strand, within PFR28_04628 at 5284.388 kb on - strand, within PFR28_04628 at 5284.489 kb on + strand at 5284.489 kb on + strand at 5284.489 kb on + strand at 5284.489 kb on + strand at 5284.490 kb on - strand at 5284.490 kb on - strand at 5284.490 kb on - strand at 5284.490 kb on - strand at 5284.490 kb on - strand at 5284.490 kb on - strand at 5284.661 kb on + strand, within PFR28_04629 at 5284.661 kb on + strand, within PFR28_04629 at 5284.662 kb on - strand, within PFR28_04629 at 5284.842 kb on - strand, within PFR28_04629 at 5285.060 kb on + strand, within PFR28_04629 at 5285.060 kb on + strand, within PFR28_04629 at 5285.061 kb on - strand, within PFR28_04629 at 5285.061 kb on - strand, within PFR28_04629 at 5285.084 kb on + strand, within PFR28_04629 at 5285.084 kb on + strand, within PFR28_04629 at 5285.085 kb on - strand, within PFR28_04629 at 5285.097 kb on + strand, within PFR28_04629 at 5285.097 kb on + strand, within PFR28_04629 at 5285.097 kb on + strand, within PFR28_04629 at 5285.097 kb on + strand, within PFR28_04629 at 5285.097 kb on + strand, within PFR28_04629 at 5285.098 kb on - strand, within PFR28_04629 at 5285.116 kb on + strand, within PFR28_04629 at 5285.116 kb on + strand, within PFR28_04629 at 5285.116 kb on + strand, within PFR28_04629 at 5285.116 kb on + strand, within PFR28_04629 at 5285.116 kb on + strand, within PFR28_04629 at 5285.117 kb on - strand, within PFR28_04629 at 5285.117 kb on - strand, within PFR28_04629 at 5285.117 kb on - strand, within PFR28_04629 at 5285.117 kb on - strand, within PFR28_04629 at 5285.228 kb on - strand, within PFR28_04629 at 5285.416 kb on + strand at 5285.416 kb on + strand at 5285.416 kb on + strand at 5285.416 kb on + strand at 5285.416 kb on + strand at 5285.416 kb on + strand at 5285.417 kb on - strand at 5285.417 kb on - strand at 5285.417 kb on - strand at 5285.417 kb on - strand at 5285.417 kb on - strand at 5285.417 kb on - strand at 5285.417 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 5,282,879 + PFR28_04626 0.59 +0.0 5,282,880 - PFR28_04626 0.60 -1.7 5,282,880 - PFR28_04626 0.60 +0.4 5,282,880 - PFR28_04626 0.60 -2.0 5,283,007 + +1.0 5,283,007 + -0.3 5,283,007 + +0.1 5,283,007 + +0.3 5,283,007 + +0.3 5,283,028 + +0.4 5,283,029 - -0.9 5,283,029 - +1.4 5,283,709 + +0.1 5,283,709 + -0.6 5,283,710 - -0.9 5,283,772 + +0.5 5,283,772 + -1.2 5,283,777 + -1.1 5,283,778 - +0.5 5,283,778 - -0.0 5,283,778 - -1.6 5,283,831 + +0.4 5,283,831 + +0.8 5,283,831 + -0.7 5,283,831 + +0.4 5,283,831 + -0.7 5,283,831 + +1.6 5,283,831 + -0.1 5,283,831 + -0.9 5,283,831 + -0.9 5,283,831 + -2.0 5,283,831 + +1.0 5,283,831 + -2.3 5,283,831 + -2.0 5,283,832 - -0.1 5,283,832 - -2.8 5,283,832 - -1.2 5,283,832 - +0.5 5,283,832 - +1.2 5,283,832 - +1.4 5,283,832 - +0.3 5,283,832 - +0.4 5,283,832 - -1.2 5,283,832 - +1.1 5,283,832 - +0.4 5,283,844 + +0.8 5,283,844 + -0.9 5,283,844 + +1.5 5,283,845 - +0.4 5,283,855 + -1.0 5,283,856 - +0.1 5,283,856 - -0.2 5,283,937 + PFR28_04628 0.14 -1.7 5,283,937 + PFR28_04628 0.14 -0.9 5,283,938 - PFR28_04628 0.14 -0.2 5,284,024 + PFR28_04628 0.27 -0.9 5,284,388 - PFR28_04628 0.84 -1.2 5,284,388 - PFR28_04628 0.84 -3.7 5,284,489 + -1.1 5,284,489 + +0.5 5,284,489 + -1.6 5,284,489 + +0.6 5,284,490 - +0.1 5,284,490 - -0.2 5,284,490 - -0.3 5,284,490 - -1.3 5,284,490 - +0.7 5,284,490 - +0.4 5,284,661 + PFR28_04629 0.17 -1.3 5,284,661 + PFR28_04629 0.17 -0.3 5,284,662 - PFR28_04629 0.18 -0.7 5,284,842 - PFR28_04629 0.38 +3.0 5,285,060 + PFR28_04629 0.63 +0.2 5,285,060 + PFR28_04629 0.63 +0.2 5,285,061 - PFR28_04629 0.63 +0.0 5,285,061 - PFR28_04629 0.63 -1.4 5,285,084 + PFR28_04629 0.66 +0.4 5,285,084 + PFR28_04629 0.66 +4.6 5,285,085 - PFR28_04629 0.66 +0.0 5,285,097 + PFR28_04629 0.67 +1.4 5,285,097 + PFR28_04629 0.67 -0.4 5,285,097 + PFR28_04629 0.67 -0.2 5,285,097 + PFR28_04629 0.67 +0.1 5,285,097 + PFR28_04629 0.67 +2.3 5,285,098 - PFR28_04629 0.67 -0.2 5,285,116 + PFR28_04629 0.69 +1.0 5,285,116 + PFR28_04629 0.69 -2.2 5,285,116 + PFR28_04629 0.69 -1.7 5,285,116 + PFR28_04629 0.69 +0.1 5,285,116 + PFR28_04629 0.69 -0.4 5,285,117 - PFR28_04629 0.69 -1.0 5,285,117 - PFR28_04629 0.69 -0.2 5,285,117 - PFR28_04629 0.69 -0.9 5,285,117 - PFR28_04629 0.69 +1.6 5,285,228 - PFR28_04629 0.82 +1.1 5,285,416 + +0.2 5,285,416 + -0.3 5,285,416 + -1.1 5,285,416 + -0.2 5,285,416 + -0.6 5,285,416 + -0.1 5,285,417 - +0.1 5,285,417 - +0.7 5,285,417 - -0.7 5,285,417 - +1.4 5,285,417 - +0.9 5,285,417 - -0.7 5,285,417 - -0.7
Or see this region's nucleotide sequence