Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04441 and PFR28_04442 are separated by 100 nucleotides PFR28_04442 and PFR28_04443 are separated by 424 nucleotides PFR28_04443 and PFR28_04444 are separated by 84 nucleotides
PFR28_04441: PFR28_04441 - hypothetical protein, at 5,055,291 to 5,055,665
_04441
PFR28_04442: PFR28_04442 - hypothetical protein, at 5,055,766 to 5,055,930
_04442
PFR28_04443: PFR28_04443 - hypothetical protein, at 5,056,355 to 5,057,293
_04443
PFR28_04444: PFR28_04444 - hypothetical protein, at 5,057,378 to 5,059,105
_04444
Position (kb) 5056
5057
5058 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5055.393 kb on + strand, within PFR28_04441 at 5055.393 kb on + strand, within PFR28_04441 at 5055.393 kb on + strand, within PFR28_04441 at 5055.393 kb on + strand, within PFR28_04441 at 5055.393 kb on + strand, within PFR28_04441 at 5055.394 kb on - strand, within PFR28_04441 at 5055.394 kb on - strand, within PFR28_04441 at 5055.394 kb on - strand, within PFR28_04441 at 5055.394 kb on - strand, within PFR28_04441 at 5055.394 kb on - strand, within PFR28_04441 at 5055.396 kb on + strand, within PFR28_04441 at 5055.397 kb on - strand, within PFR28_04441 at 5055.397 kb on - strand, within PFR28_04441 at 5055.397 kb on - strand, within PFR28_04441 at 5055.397 kb on - strand, within PFR28_04441 at 5055.464 kb on + strand, within PFR28_04441 at 5055.465 kb on - strand, within PFR28_04441 at 5055.465 kb on - strand, within PFR28_04441 at 5055.568 kb on + strand, within PFR28_04441 at 5055.568 kb on + strand, within PFR28_04441 at 5055.568 kb on + strand, within PFR28_04441 at 5055.568 kb on + strand, within PFR28_04441 at 5055.569 kb on - strand, within PFR28_04441 at 5055.569 kb on - strand, within PFR28_04441 at 5055.569 kb on - strand, within PFR28_04441 at 5055.569 kb on - strand, within PFR28_04441 at 5055.569 kb on - strand, within PFR28_04441 at 5055.663 kb on + strand at 5055.664 kb on - strand at 5055.664 kb on - strand at 5055.664 kb on - strand at 5055.664 kb on - strand at 5055.664 kb on - strand at 5055.669 kb on + strand at 5055.669 kb on + strand at 5055.669 kb on + strand at 5055.669 kb on + strand at 5055.669 kb on + strand at 5055.669 kb on + strand at 5055.669 kb on + strand at 5055.670 kb on - strand at 5055.670 kb on - strand at 5055.670 kb on - strand at 5055.670 kb on - strand at 5055.670 kb on - strand at 5055.670 kb on - strand at 5055.670 kb on - strand at 5055.670 kb on - strand at 5055.670 kb on - strand at 5055.670 kb on - strand at 5055.670 kb on - strand at 5055.670 kb on - strand at 5055.755 kb on + strand at 5055.755 kb on + strand at 5055.755 kb on + strand at 5055.755 kb on + strand at 5055.756 kb on - strand at 5055.756 kb on - strand at 5055.756 kb on - strand at 5055.756 kb on - strand at 5055.756 kb on - strand at 5055.756 kb on - strand at 5056.051 kb on + strand at 5056.052 kb on - strand at 5056.052 kb on - strand at 5056.075 kb on + strand at 5056.075 kb on + strand at 5056.075 kb on + strand at 5056.101 kb on + strand at 5056.101 kb on + strand at 5056.102 kb on - strand at 5056.210 kb on - strand at 5056.210 kb on - strand at 5056.660 kb on - strand, within PFR28_04443 at 5056.671 kb on + strand, within PFR28_04443 at 5056.671 kb on + strand, within PFR28_04443 at 5056.671 kb on + strand, within PFR28_04443 at 5056.671 kb on + strand, within PFR28_04443 at 5056.672 kb on - strand, within PFR28_04443 at 5056.672 kb on - strand, within PFR28_04443 at 5056.830 kb on + strand, within PFR28_04443 at 5056.830 kb on + strand, within PFR28_04443 at 5056.831 kb on - strand, within PFR28_04443 at 5056.854 kb on + strand, within PFR28_04443 at 5056.855 kb on - strand, within PFR28_04443 at 5056.905 kb on + strand, within PFR28_04443 at 5056.906 kb on - strand, within PFR28_04443 at 5056.906 kb on - strand, within PFR28_04443 at 5056.906 kb on - strand, within PFR28_04443 at 5056.956 kb on + strand, within PFR28_04443 at 5056.956 kb on + strand, within PFR28_04443 at 5056.957 kb on - strand, within PFR28_04443 at 5056.957 kb on - strand, within PFR28_04443 at 5056.957 kb on - strand, within PFR28_04443 at 5056.957 kb on - strand, within PFR28_04443 at 5056.957 kb on - strand, within PFR28_04443 at 5056.960 kb on - strand, within PFR28_04443 at 5056.960 kb on - strand, within PFR28_04443 at 5057.142 kb on + strand, within PFR28_04443 at 5057.155 kb on - strand, within PFR28_04443 at 5057.157 kb on + strand, within PFR28_04443 at 5057.157 kb on + strand, within PFR28_04443 at 5057.157 kb on + strand, within PFR28_04443 at 5057.158 kb on - strand, within PFR28_04443 at 5057.158 kb on - strand, within PFR28_04443 at 5057.279 kb on - strand at 5057.293 kb on + strand at 5057.293 kb on + strand at 5057.293 kb on + strand at 5057.293 kb on + strand at 5057.293 kb on + strand at 5057.293 kb on + strand at 5057.293 kb on + strand at 5057.293 kb on + strand at 5057.293 kb on + strand at 5057.293 kb on + strand at 5057.293 kb on + strand at 5057.293 kb on + strand at 5057.293 kb on + strand at 5057.293 kb on + strand at 5057.293 kb on + strand at 5057.293 kb on + strand at 5057.293 kb on + strand at 5057.294 kb on - strand at 5057.294 kb on - strand at 5057.294 kb on - strand at 5057.294 kb on - strand at 5057.294 kb on - strand at 5057.294 kb on - strand at 5057.294 kb on - strand at 5057.294 kb on - strand at 5057.571 kb on + strand, within PFR28_04444 at 5057.572 kb on - strand, within PFR28_04444 at 5057.601 kb on + strand, within PFR28_04444 at 5057.601 kb on + strand, within PFR28_04444 at 5057.601 kb on + strand, within PFR28_04444 at 5057.602 kb on - strand, within PFR28_04444 at 5057.602 kb on - strand, within PFR28_04444 at 5057.602 kb on - strand, within PFR28_04444 at 5057.733 kb on + strand, within PFR28_04444 at 5057.733 kb on + strand, within PFR28_04444 at 5057.734 kb on - strand, within PFR28_04444 at 5057.734 kb on - strand, within PFR28_04444 at 5057.734 kb on - strand, within PFR28_04444 at 5057.734 kb on - strand, within PFR28_04444 at 5057.734 kb on - strand, within PFR28_04444 at 5057.734 kb on - strand, within PFR28_04444 at 5057.989 kb on - strand, within PFR28_04444 at 5057.989 kb on - strand, within PFR28_04444 at 5057.989 kb on - strand, within PFR28_04444 at 5057.989 kb on - strand, within PFR28_04444 at 5058.127 kb on - strand, within PFR28_04444 at 5058.127 kb on - strand, within PFR28_04444 at 5058.127 kb on - strand, within PFR28_04444 at 5058.127 kb on - strand, within PFR28_04444 at 5058.156 kb on + strand, within PFR28_04444 at 5058.156 kb on + strand, within PFR28_04444 at 5058.156 kb on + strand, within PFR28_04444
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 5,055,393 + PFR28_04441 0.27 -0.8 5,055,393 + PFR28_04441 0.27 +2.3 5,055,393 + PFR28_04441 0.27 -0.1 5,055,393 + PFR28_04441 0.27 +0.7 5,055,393 + PFR28_04441 0.27 +1.5 5,055,394 - PFR28_04441 0.27 +0.1 5,055,394 - PFR28_04441 0.27 -0.3 5,055,394 - PFR28_04441 0.27 -0.8 5,055,394 - PFR28_04441 0.27 +1.8 5,055,394 - PFR28_04441 0.27 +0.3 5,055,396 + PFR28_04441 0.28 +0.2 5,055,397 - PFR28_04441 0.28 +1.3 5,055,397 - PFR28_04441 0.28 +1.6 5,055,397 - PFR28_04441 0.28 +0.8 5,055,397 - PFR28_04441 0.28 +0.8 5,055,464 + PFR28_04441 0.46 -1.3 5,055,465 - PFR28_04441 0.46 -0.6 5,055,465 - PFR28_04441 0.46 -1.3 5,055,568 + PFR28_04441 0.74 -0.9 5,055,568 + PFR28_04441 0.74 +0.7 5,055,568 + PFR28_04441 0.74 +0.0 5,055,568 + PFR28_04441 0.74 -1.5 5,055,569 - PFR28_04441 0.74 -0.8 5,055,569 - PFR28_04441 0.74 -0.5 5,055,569 - PFR28_04441 0.74 +1.2 5,055,569 - PFR28_04441 0.74 +1.5 5,055,569 - PFR28_04441 0.74 -0.4 5,055,663 + +0.6 5,055,664 - +0.5 5,055,664 - +1.0 5,055,664 - +0.9 5,055,664 - -0.3 5,055,664 - -0.0 5,055,669 + -0.0 5,055,669 + +0.1 5,055,669 + -0.1 5,055,669 + -0.5 5,055,669 + +0.6 5,055,669 + -1.2 5,055,669 + +1.7 5,055,670 - +0.9 5,055,670 - +0.2 5,055,670 - -0.7 5,055,670 - -0.9 5,055,670 - -0.4 5,055,670 - -0.2 5,055,670 - -0.0 5,055,670 - -0.3 5,055,670 - -0.2 5,055,670 - -1.2 5,055,670 - -0.1 5,055,670 - +0.1 5,055,755 + +1.4 5,055,755 + +0.2 5,055,755 + +0.5 5,055,755 + -0.2 5,055,756 - -0.4 5,055,756 - -0.5 5,055,756 - -0.3 5,055,756 - +0.2 5,055,756 - +0.3 5,055,756 - +1.0 5,056,051 + -0.2 5,056,052 - +0.3 5,056,052 - -0.1 5,056,075 + -0.7 5,056,075 + +1.6 5,056,075 + -0.9 5,056,101 + -2.0 5,056,101 + +0.5 5,056,102 - +0.1 5,056,210 - +0.2 5,056,210 - +1.5 5,056,660 - PFR28_04443 0.32 +0.1 5,056,671 + PFR28_04443 0.34 -0.9 5,056,671 + PFR28_04443 0.34 +0.0 5,056,671 + PFR28_04443 0.34 +0.2 5,056,671 + PFR28_04443 0.34 -1.4 5,056,672 - PFR28_04443 0.34 -0.6 5,056,672 - PFR28_04443 0.34 -1.2 5,056,830 + PFR28_04443 0.51 -1.5 5,056,830 + PFR28_04443 0.51 -1.4 5,056,831 - PFR28_04443 0.51 -0.8 5,056,854 + PFR28_04443 0.53 +0.7 5,056,855 - PFR28_04443 0.53 +0.1 5,056,905 + PFR28_04443 0.59 -0.2 5,056,906 - PFR28_04443 0.59 -0.4 5,056,906 - PFR28_04443 0.59 -0.2 5,056,906 - PFR28_04443 0.59 -1.3 5,056,956 + PFR28_04443 0.64 -1.8 5,056,956 + PFR28_04443 0.64 -0.9 5,056,957 - PFR28_04443 0.64 -1.2 5,056,957 - PFR28_04443 0.64 -0.0 5,056,957 - PFR28_04443 0.64 +1.5 5,056,957 - PFR28_04443 0.64 -1.3 5,056,957 - PFR28_04443 0.64 -1.3 5,056,960 - PFR28_04443 0.64 -2.0 5,056,960 - PFR28_04443 0.64 -1.6 5,057,142 + PFR28_04443 0.84 -0.2 5,057,155 - PFR28_04443 0.85 -0.4 5,057,157 + PFR28_04443 0.85 -0.9 5,057,157 + PFR28_04443 0.85 -1.2 5,057,157 + PFR28_04443 0.85 -2.2 5,057,158 - PFR28_04443 0.86 -0.6 5,057,158 - PFR28_04443 0.86 -0.9 5,057,279 - -0.9 5,057,293 + -0.7 5,057,293 + -0.2 5,057,293 + -3.1 5,057,293 + -0.2 5,057,293 + -1.0 5,057,293 + +0.5 5,057,293 + -0.2 5,057,293 + +1.2 5,057,293 + -0.3 5,057,293 + -2.6 5,057,293 + -0.9 5,057,293 + -0.3 5,057,293 + -0.1 5,057,293 + -1.6 5,057,293 + -2.9 5,057,293 + -1.5 5,057,293 + -2.2 5,057,294 - +0.7 5,057,294 - -0.5 5,057,294 - -0.2 5,057,294 - -1.5 5,057,294 - +0.7 5,057,294 - -0.2 5,057,294 - -0.8 5,057,294 - -1.3 5,057,571 + PFR28_04444 0.11 +0.9 5,057,572 - PFR28_04444 0.11 +2.1 5,057,601 + PFR28_04444 0.13 +0.2 5,057,601 + PFR28_04444 0.13 +0.1 5,057,601 + PFR28_04444 0.13 -1.4 5,057,602 - PFR28_04444 0.13 +1.7 5,057,602 - PFR28_04444 0.13 +0.7 5,057,602 - PFR28_04444 0.13 +3.3 5,057,733 + PFR28_04444 0.21 +0.0 5,057,733 + PFR28_04444 0.21 -0.2 5,057,734 - PFR28_04444 0.21 +2.5 5,057,734 - PFR28_04444 0.21 +3.5 5,057,734 - PFR28_04444 0.21 +1.3 5,057,734 - PFR28_04444 0.21 +2.2 5,057,734 - PFR28_04444 0.21 +3.6 5,057,734 - PFR28_04444 0.21 +0.6 5,057,989 - PFR28_04444 0.35 +1.3 5,057,989 - PFR28_04444 0.35 +1.5 5,057,989 - PFR28_04444 0.35 -1.4 5,057,989 - PFR28_04444 0.35 -0.6 5,058,127 - PFR28_04444 0.43 -0.9 5,058,127 - PFR28_04444 0.43 +2.3 5,058,127 - PFR28_04444 0.43 +0.4 5,058,127 - PFR28_04444 0.43 -1.2 5,058,156 + PFR28_04444 0.45 -0.3 5,058,156 + PFR28_04444 0.45 +0.2 5,058,156 + PFR28_04444 0.45 -1.7
Or see this region's nucleotide sequence