Strain Fitness in Pseudomonas sp. RS175 around PFR28_03460

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
3,986,809	+		PFR28_03459	0.79	+0.1
3,986,809	+		PFR28_03459	0.79	-0.0
3,986,809	+		PFR28_03459	0.79	-0.1
3,986,810	-		PFR28_03459	0.79	-0.5
3,986,810	-		PFR28_03459	0.79	-0.7
3,986,810	-		PFR28_03459	0.79	-0.6
3,986,819	-		PFR28_03459	0.79	-0.5
3,986,819	-		PFR28_03459	0.79	+0.5
3,986,819	-		PFR28_03459	0.79	+0.7
3,986,881	+		PFR28_03459	0.80	-0.5
3,986,881	+		PFR28_03459	0.80	+0.4
3,986,941	+		PFR28_03459	0.82	+0.8
3,986,941	+		PFR28_03459	0.82	-0.3
3,986,941	+		PFR28_03459	0.82	+1.6
3,986,941	+		PFR28_03459	0.82	+1.0
3,986,941	+		PFR28_03459	0.82	+0.7
3,986,941	+		PFR28_03459	0.82	-0.3
3,986,941	+		PFR28_03459	0.82	-2.2
3,986,941	+		PFR28_03459	0.82	-3.0
3,986,941	+		PFR28_03459	0.82	+0.7
3,986,941	+		PFR28_03459	0.82	-1.4
3,986,941	+		PFR28_03459	0.82	+0.9
3,986,942	-		PFR28_03459	0.82	+0.0
3,986,942	-		PFR28_03459	0.82	-0.1
3,986,942	-		PFR28_03459	0.82	-1.7
3,986,942	-		PFR28_03459	0.82	+0.2
3,986,942	-		PFR28_03459	0.82	+1.6
3,986,942	-		PFR28_03459	0.82	+0.4
3,986,942	-		PFR28_03459	0.82	-0.6
3,986,942	-		PFR28_03459	0.82	+0.9
3,986,942	-		PFR28_03459	0.82	+0.9
3,987,068	-		PFR28_03459	0.84	-1.2
3,987,190	+		PFR28_03459	0.87	+0.3
3,987,190	+		PFR28_03459	0.87	-1.5
3,987,190	+		PFR28_03459	0.87	+0.6
3,987,190	+		PFR28_03459	0.87	-1.5
3,987,190	+		PFR28_03459	0.87	-0.5
3,987,190	+		PFR28_03459	0.87	+0.7
3,987,191	-		PFR28_03459	0.87	+0.5
3,987,191	-		PFR28_03459	0.87	+0.7
3,987,191	-		PFR28_03459	0.87	+0.3
3,987,191	-		PFR28_03459	0.87	-0.7
3,987,191	-		PFR28_03459	0.87	-1.3
3,987,191	-		PFR28_03459	0.87	-0.3
3,987,443	-				-0.4
3,987,569	-				+0.2
3,987,598	+				-1.9
3,987,599	-				+1.3
3,987,649	+				-0.1
3,987,650	-				-0.1
3,987,712	+				-0.9
3,987,712	+				-1.5
3,987,712	+				-1.2
3,987,713	-				+0.9
3,987,713	-				+1.2
3,987,713	-				-0.2
3,987,713	-				+0.2
3,987,725	-				+1.4
3,987,742	+				-0.7
3,987,742	+				+0.3
3,987,742	+				+1.3
3,987,742	+				-0.1
3,987,742	+				+0.4
3,987,743	-				+0.2
3,987,743	-				+2.2
3,987,743	-				+0.6
3,987,850	+				+0.4
3,987,954	+				-1.7
3,987,975	+				+1.0
3,987,975	+				-0.8
3,987,975	+				+0.7
3,987,976	-				-0.1
3,987,982	+				-0.0
3,987,982	+				-0.4
3,987,982	+				-0.8
3,987,982	+				-1.7
3,987,983	-				-1.3
3,987,983	-				-0.1
3,987,983	-				+2.0
3,987,984	+				+0.9
3,987,984	+				-1.1
3,988,108	+		PFR28_03460	0.12	-1.2
3,988,109	-		PFR28_03460	0.12	-1.0
3,988,109	-		PFR28_03460	0.12	-1.3
3,988,121	+		PFR28_03460	0.12	-0.3
3,988,178	-		PFR28_03460	0.14	-1.1
3,988,186	+		PFR28_03460	0.15	+0.2
3,988,186	+		PFR28_03460	0.15	-0.6
3,988,187	-		PFR28_03460	0.15	+0.7
3,988,187	-		PFR28_03460	0.15	+1.2
3,988,187	-		PFR28_03460	0.15	-0.0
3,988,187	-		PFR28_03460	0.15	-1.2
3,988,187	-		PFR28_03460	0.15	-2.6
3,988,246	+		PFR28_03460	0.17	+0.1
3,988,246	+		PFR28_03460	0.17	-0.3
3,988,247	-		PFR28_03460	0.17	-2.4
3,988,247	-		PFR28_03460	0.17	+0.5
3,988,247	-		PFR28_03460	0.17	+0.4
3,988,247	-		PFR28_03460	0.17	-1.2
3,988,266	-		PFR28_03460	0.17	+0.3
3,988,279	+		PFR28_03460	0.18	+0.5
3,988,279	+		PFR28_03460	0.18	+1.3
3,988,280	-		PFR28_03460	0.18	+0.7
3,988,411	+		PFR28_03460	0.23	-1.7
3,988,411	+		PFR28_03460	0.23	+1.3
3,988,412	-		PFR28_03460	0.23	+0.2
3,988,558	+		PFR28_03460	0.28	-0.2
3,988,558	+		PFR28_03460	0.28	+0.7
3,988,558	+		PFR28_03460	0.28	+0.8
3,988,558	+		PFR28_03460	0.28	+0.1
3,988,558	+		PFR28_03460	0.28	-1.0
3,988,558	+		PFR28_03460	0.28	-0.3
3,988,559	-		PFR28_03460	0.28	+0.3
3,988,559	-		PFR28_03460	0.28	+0.3
3,988,559	-		PFR28_03460	0.28	-1.3
3,988,559	-		PFR28_03460	0.28	+0.6
3,988,559	-		PFR28_03460	0.28	+0.2
3,988,559	-		PFR28_03460	0.28	+0.8
3,988,559	-		PFR28_03460	0.28	-0.4
3,988,559	-		PFR28_03460	0.28	-0.3
3,988,585	+		PFR28_03460	0.29	-0.8
3,988,585	+		PFR28_03460	0.29	-0.4
3,988,585	+		PFR28_03460	0.29	-0.5
3,988,585	+		PFR28_03460	0.29	+0.7
3,988,585	+		PFR28_03460	0.29	-0.4
3,988,585	+		PFR28_03460	0.29	+0.0
3,988,585	+		PFR28_03460	0.29	+2.0
3,988,586	-		PFR28_03460	0.29	+0.8
3,988,586	-		PFR28_03460	0.29	-2.1
3,988,586	-		PFR28_03460	0.29	+1.2
3,988,586	-		PFR28_03460	0.29	-2.3
3,988,586	-		PFR28_03460	0.29	+0.2
3,988,586	-		PFR28_03460	0.29	+1.1
3,988,586	-		PFR28_03460	0.29	+2.2
3,988,615	+		PFR28_03460	0.30	+1.2
3,988,615	+		PFR28_03460	0.30	+0.5
3,988,615	+		PFR28_03460	0.30	+1.0
3,988,616	-		PFR28_03460	0.30	+2.3
3,988,616	-		PFR28_03460	0.30	+0.2
3,988,616	-		PFR28_03460	0.30	+0.3
3,988,694	-		PFR28_03460	0.32	+0.9
3,988,716	+		PFR28_03460	0.33	-1.4
3,988,716	+		PFR28_03460	0.33	-1.1
3,988,717	-		PFR28_03460	0.33	-2.1
3,988,795	+		PFR28_03460	0.36	-0.1
3,988,795	+		PFR28_03460	0.36	+2.1
3,988,796	-		PFR28_03460	0.36	+0.6
3,988,796	-		PFR28_03460	0.36	-0.5
3,988,796	-		PFR28_03460	0.36	-0.3
3,988,910	-		PFR28_03460	0.40	+0.0
3,988,989	+		PFR28_03460	0.43	-0.3
3,988,989	+		PFR28_03460	0.43	-0.9
3,988,989	+		PFR28_03460	0.43	-1.6
3,989,198	-		PFR28_03460	0.50	+0.9
3,989,198	-		PFR28_03460	0.50	+0.5
3,989,198	-		PFR28_03460	0.50	-1.5
3,989,204	-		PFR28_03460	0.50	-1.1
3,989,281	+		PFR28_03460	0.53	-0.4
3,989,282	-		PFR28_03460	0.53	-0.7
3,989,374	+		PFR28_03460	0.56	-0.6
3,989,374	+		PFR28_03460	0.56	-1.8
3,989,374	+		PFR28_03460	0.56	-0.7
3,989,497	+		PFR28_03460	0.61	+0.6
3,989,497	+		PFR28_03460	0.61	-0.1
3,989,497	+		PFR28_03460	0.61	+0.9
3,989,498	-		PFR28_03460	0.61	-0.2
3,989,498	-		PFR28_03460	0.61	-2.7
3,989,498	-		PFR28_03460	0.61	-0.5
3,989,501	-		PFR28_03460	0.61	+0.9
3,989,501	-		PFR28_03460	0.61	+0.1
3,989,544	-		PFR28_03460	0.62	+3.5
3,989,602	+		PFR28_03460	0.64	-0.5
3,989,602	+		PFR28_03460	0.64	+1.3
3,989,602	+		PFR28_03460	0.64	-0.1
3,989,603	-		PFR28_03460	0.65	+0.5
3,989,603	-		PFR28_03460	0.65	+0.3
3,989,623	+		PFR28_03460	0.65	+0.6
3,989,624	-		PFR28_03460	0.65	+1.2
3,989,624	-		PFR28_03460	0.65	-0.7
3,989,624	-		PFR28_03460	0.65	+0.2
3,989,689	+		PFR28_03460	0.68	-0.6
3,989,713	-		PFR28_03460	0.68	-0.1
3,989,713	-		PFR28_03460	0.68	+0.5
3,989,713	-		PFR28_03460	0.68	+0.1
3,989,800	-		PFR28_03460	0.71	-0.3
3,989,841	+		PFR28_03460	0.73	+0.0
3,989,842	-		PFR28_03460	0.73	+0.3
3,989,966	+		PFR28_03460	0.77	-0.6
3,990,065	-		PFR28_03460	0.81	-0.7
3,990,065	-		PFR28_03460	0.81	-1.3
3,990,178	+		PFR28_03460	0.85	+0.5
3,990,178	+		PFR28_03460	0.85	+1.1
3,990,179	-		PFR28_03460	0.85	-0.3
3,990,179	-		PFR28_03460	0.85	+0.8
3,990,179	-		PFR28_03460	0.85	-0.1
3,990,208	+		PFR28_03460	0.86	+0.8
3,990,208	+		PFR28_03460	0.86	-0.6
3,990,209	-		PFR28_03460	0.86	-0.0
3,990,209	-		PFR28_03460	0.86	-0.3
3,990,304	-		PFR28_03460	0.89	-0.5
3,990,322	+		PFR28_03460	0.90	-0.5
3,990,322	+		PFR28_03460	0.90	+0.3
3,990,323	-		PFR28_03460	0.90	+0.2
3,990,601	+				+0.6
3,990,660	+				+0.7
3,990,661	-				+0.3
3,990,661	-				+0.0
3,990,661	-				-2.7
3,990,661	-				+1.2
3,990,682	-				-0.6
3,990,734	+				-0.7
3,990,734	+				-1.4
3,990,734	+				-0.3
3,990,734	+				+0.6
3,990,734	+				-0.4
3,990,734	+				-0.7
3,990,734	+				-0.3
3,990,735	-				+0.9
3,990,735	-				-0.8
3,990,735	-				+0.0
3,990,735	-				-1.1
3,990,735	-				+0.9
3,990,735	-				+0.1
3,990,735	-				+1.1
3,990,735	-				-1.2
3,990,735	-				+2.4
3,990,735	-				-3.1
3,990,735	-				+1.7
3,990,736	+				-2.5
3,990,848	+				-0.3
3,990,848	+				-0.1
3,990,849	-				-2.0
3,990,849	-				+1.0
3,991,080	-		PFR28_03461	0.22	+0.3
3,991,080	-		PFR28_03461	0.22	+0.2
3,991,094	+		PFR28_03461	0.22	+0.6
3,991,094	+		PFR28_03461	0.22	+1.7
3,991,094	+		PFR28_03461	0.22	+1.0
3,991,094	+		PFR28_03461	0.22	+0.5
3,991,094	+		PFR28_03461	0.22	-1.0
3,991,094	+		PFR28_03461	0.22	+0.2
3,991,094	+		PFR28_03461	0.22	-2.3
3,991,095	-		PFR28_03461	0.22	-0.3
3,991,095	-		PFR28_03461	0.22	+1.0
3,991,095	-		PFR28_03461	0.22	-2.4
3,991,109	+		PFR28_03461	0.23	-0.2
3,991,110	-		PFR28_03461	0.23	-0.1
3,991,110	-		PFR28_03461	0.23	-0.4
3,991,149	-		PFR28_03461	0.26	-2.5
3,991,149	-		PFR28_03461	0.26	-0.6
3,991,149	-		PFR28_03461	0.26	+0.5
3,991,181	+		PFR28_03461	0.27	+1.0