Strain Fitness in Pseudomonas sp. RS175 around PFR28_03388

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
3,896,797	-		PFR28_03386	0.28	+0.1
3,896,828	+		PFR28_03386	0.43	+0.6
3,896,828	+		PFR28_03386	0.43	-1.0
3,896,829	-		PFR28_03386	0.43	-0.3
3,896,887	-		PFR28_03386	0.70	+0.8
3,896,997	-				+1.1
3,897,004	+				+0.5
3,897,004	+				-2.0
3,897,004	+				-1.5
3,897,004	+				-0.2
3,897,004	+				+0.5
3,897,004	+				-0.8
3,897,004	+				-0.4
3,897,005	-				+1.5
3,897,005	-				+0.3
3,897,005	-				-2.0
3,897,005	-				-0.7
3,897,005	-				+1.0
3,897,005	-				+0.5
3,897,005	-				-0.3
3,897,012	+				-1.0
3,897,013	-				-0.2
3,897,119	+		PFR28_03387	0.15	+0.3
3,897,120	-		PFR28_03387	0.16	-0.7
3,897,120	-		PFR28_03387	0.16	+1.9
3,897,120	-		PFR28_03387	0.16	-0.3
3,897,167	+		PFR28_03387	0.25	-0.3
3,897,167	+		PFR28_03387	0.25	-1.0
3,897,168	-		PFR28_03387	0.25	-0.3
3,897,488	+				+1.3
3,897,488	+				-1.3
3,897,488	+				-1.3
3,897,488	+				+0.3
3,897,559	+				+0.3
3,897,559	+				+0.1
3,897,559	+				-2.0
3,897,559	+				+0.4
3,897,560	-				+0.7
3,897,560	-				+0.1
3,897,579	+				+0.8
3,897,580	-				-0.9
3,897,622	+				-0.5
3,897,662	-				+0.5
3,897,669	+				-0.6
3,897,670	-				+0.3
3,897,708	+				+0.3
3,897,708	+				+0.1
3,897,709	-				+0.7
3,897,856	+		PFR28_03388	0.13	-2.7
3,897,856	+		PFR28_03388	0.13	-0.7
3,897,975	+		PFR28_03388	0.24	-1.6
3,897,976	-		PFR28_03388	0.24	-1.8
3,897,982	+		PFR28_03388	0.25	-1.9
3,897,982	+		PFR28_03388	0.25	-3.2
3,897,982	+		PFR28_03388	0.25	-2.0
3,898,201	+		PFR28_03388	0.45	-1.8
3,898,225	+		PFR28_03388	0.47	-2.0
3,898,226	-		PFR28_03388	0.48	-2.9
3,898,227	+		PFR28_03388	0.48	-1.2
3,898,227	+		PFR28_03388	0.48	-1.9
3,898,227	+		PFR28_03388	0.48	-2.7
3,898,227	+		PFR28_03388	0.48	-3.4
3,898,227	+		PFR28_03388	0.48	-1.5
3,898,227	+		PFR28_03388	0.48	-3.3
3,898,227	+		PFR28_03388	0.48	-2.1
3,898,227	+		PFR28_03388	0.48	-1.5
3,898,227	+		PFR28_03388	0.48	-1.2
3,898,227	+		PFR28_03388	0.48	-2.1
3,898,227	+		PFR28_03388	0.48	-2.9
3,898,227	+		PFR28_03388	0.48	-3.0
3,898,227	+		PFR28_03388	0.48	-0.8
3,898,227	+		PFR28_03388	0.48	-3.9
3,898,227	+		PFR28_03388	0.48	-2.5
3,898,227	+		PFR28_03388	0.48	-0.5
3,898,227	+		PFR28_03388	0.48	-1.7
3,898,228	-		PFR28_03388	0.48	-1.9
3,898,228	-		PFR28_03388	0.48	-3.4
3,898,228	-		PFR28_03388	0.48	-2.8
3,898,228	-		PFR28_03388	0.48	-3.5
3,898,228	-		PFR28_03388	0.48	-3.0
3,898,228	-		PFR28_03388	0.48	-1.6
3,898,228	-		PFR28_03388	0.48	-1.3
3,898,228	-		PFR28_03388	0.48	-2.4
3,898,228	-		PFR28_03388	0.48	-2.2
3,898,228	-		PFR28_03388	0.48	-3.6
3,898,228	-		PFR28_03388	0.48	-3.1
3,898,228	-		PFR28_03388	0.48	-1.8
3,898,362	+		PFR28_03388	0.60	-1.3
3,898,362	+		PFR28_03388	0.60	-2.1
3,898,362	+		PFR28_03388	0.60	-1.7
3,898,362	+		PFR28_03388	0.60	-2.0
3,898,362	+		PFR28_03388	0.60	-0.2
3,898,362	+		PFR28_03388	0.60	-2.1
3,898,362	+		PFR28_03388	0.60	-2.7
3,898,362	+		PFR28_03388	0.60	-4.7
3,898,362	+		PFR28_03388	0.60	-1.1
3,898,362	+		PFR28_03388	0.60	-3.6
3,898,362	+		PFR28_03388	0.60	-3.2
3,898,363	-		PFR28_03388	0.61	-1.7
3,898,363	-		PFR28_03388	0.61	-2.7
3,898,363	-		PFR28_03388	0.61	-4.6
3,898,363	-		PFR28_03388	0.61	-1.9
3,898,363	-		PFR28_03388	0.61	-3.2
3,898,363	-		PFR28_03388	0.61	-5.1
3,898,467	-		PFR28_03388	0.70	-2.4
3,898,632	+		PFR28_03388	0.86	-3.2
3,898,632	+		PFR28_03388	0.86	-4.1
3,898,633	-		PFR28_03388	0.86	-2.5
3,898,754	+				-1.3
3,898,754	+				-4.2
3,898,754	+				-4.4
3,898,755	-				-1.0
3,898,820	+				+0.3
3,898,821	-				+0.3
3,898,821	-				-0.2
3,898,821	-				-0.0
3,898,822	+				+0.1
3,898,822	+				-0.1
3,898,822	+				-0.6
3,898,822	+				-0.7
3,898,822	+				+1.2
3,898,822	+				-1.4
3,898,822	+				-1.3
3,898,822	+				+0.9
3,898,822	+				-2.3
3,898,822	+				+0.4
3,898,822	+				-0.4
3,898,823	-				-0.3
3,898,823	-				-0.6
3,898,823	-				+0.3
3,898,823	-				-0.0
3,898,823	-				+0.1
3,898,903	+				-0.3
3,899,021	+				-1.0
3,899,022	-				+0.6
3,899,115	+				-1.2
3,899,115	+				-1.0
3,899,115	+				+0.7
3,899,115	+				-0.2
3,899,115	+				+1.5
3,899,115	+				+0.1
3,899,115	+				-0.2
3,899,116	-				+1.5
3,899,116	-				+0.2
3,899,116	-				-1.5
3,899,151	+				-0.2
3,899,152	-				+1.3
3,899,241	+				+1.1
3,899,241	+				-0.1
3,899,241	+				+0.2
3,899,241	+				+0.4
3,899,241	+				+1.1
3,899,241	+				+1.5
3,899,241	+				-0.9
3,899,242	-				+1.2
3,899,242	-				+0.8
3,899,242	-				+1.7
3,899,242	-				-0.1
3,899,242	-				-0.4
3,899,242	-				+0.1
3,899,242	-				+0.4
3,899,498	+		PFR28_03389	0.20	+1.1
3,899,498	+		PFR28_03389	0.20	+1.0
3,899,498	+		PFR28_03389	0.20	-0.0
3,899,498	+		PFR28_03389	0.20	-0.9
3,899,498	+		PFR28_03389	0.20	-2.0
3,899,499	-		PFR28_03389	0.20	+0.0
3,899,499	-		PFR28_03389	0.20	+1.7
3,899,499	-		PFR28_03389	0.20	+1.0
3,899,534	+		PFR28_03389	0.22	-0.7
3,899,534	+		PFR28_03389	0.22	-0.0
3,899,535	-		PFR28_03389	0.22	-1.0
3,899,535	-		PFR28_03389	0.22	+0.3
3,899,535	-		PFR28_03389	0.22	-2.3
3,899,535	-		PFR28_03389	0.22	+0.3
3,899,535	-		PFR28_03389	0.22	+0.3
3,899,535	-		PFR28_03389	0.22	+0.2
3,899,540	+		PFR28_03389	0.23	-0.2
3,899,540	+		PFR28_03389	0.23	+0.4
3,899,579	+		PFR28_03389	0.25	+0.1
3,899,636	+		PFR28_03389	0.28	+0.4
3,899,636	+		PFR28_03389	0.28	-0.4
3,899,637	-		PFR28_03389	0.28	+0.0
3,899,637	-		PFR28_03389	0.28	+0.2
3,899,644	-		PFR28_03389	0.28	-0.3
3,899,712	-		PFR28_03389	0.32	-1.4
3,899,712	-		PFR28_03389	0.32	-0.8
3,899,712	-		PFR28_03389	0.32	+0.1
3,899,714	+		PFR28_03389	0.32	-0.2
3,899,714	+		PFR28_03389	0.32	+0.6
3,899,714	+		PFR28_03389	0.32	-0.5
3,899,714	+		PFR28_03389	0.32	-1.2
3,899,714	+		PFR28_03389	0.32	+1.6
3,899,714	+		PFR28_03389	0.32	-0.7
3,899,714	+		PFR28_03389	0.32	+1.3
3,899,714	+		PFR28_03389	0.32	-0.5
3,899,714	+		PFR28_03389	0.32	-0.9
3,899,714	+		PFR28_03389	0.32	+1.7
3,899,714	+		PFR28_03389	0.32	-1.7
3,899,715	-		PFR28_03389	0.32	-0.9
3,899,715	-		PFR28_03389	0.32	-0.1
3,899,715	-		PFR28_03389	0.32	+1.2
3,899,715	-		PFR28_03389	0.32	-0.7
3,899,715	-		PFR28_03389	0.32	+2.1
3,899,715	-		PFR28_03389	0.32	-0.3
3,899,715	-		PFR28_03389	0.32	-1.4
3,899,715	-		PFR28_03389	0.32	-0.1
3,899,715	-		PFR28_03389	0.32	+0.2
3,899,715	-		PFR28_03389	0.32	-0.8
3,899,715	-		PFR28_03389	0.32	-0.1
3,899,715	-		PFR28_03389	0.32	-0.9
3,899,720	+		PFR28_03389	0.32	+0.4
3,899,720	+		PFR28_03389	0.32	+0.6
3,899,720	+		PFR28_03389	0.32	-1.1
3,899,720	+		PFR28_03389	0.32	-0.6
3,899,720	+		PFR28_03389	0.32	+1.3
3,899,720	+		PFR28_03389	0.32	-0.3
3,899,720	+		PFR28_03389	0.32	+0.7
3,899,721	-		PFR28_03389	0.32	+0.3
3,899,721	-		PFR28_03389	0.32	-0.0
3,899,721	-		PFR28_03389	0.32	-0.3
3,899,721	-		PFR28_03389	0.32	-0.5