Strain Fitness in Pseudomonas sp. RS175 around PFR28_03363

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
3,868,151	+				+0.2
3,868,151	+				-1.2
3,868,152	-				+0.4
3,868,152	-				+2.7
3,868,152	-				+0.3
3,868,152	-				-0.7
3,868,152	-				-0.4
3,868,311	+				-1.3
3,868,311	+				-1.6
3,868,312	-				+0.5
3,868,312	-				+0.6
3,868,348	+				+0.1
3,868,349	-				+0.4
3,868,349	-				-0.2
3,868,349	-				-1.9
3,868,553	+		PFR28_03362	0.43	+0.4
3,868,554	-		PFR28_03362	0.44	+0.2
3,868,554	-		PFR28_03362	0.44	-1.1
3,868,733	+				+0.6
3,868,733	+				-2.1
3,868,733	+				-0.6
3,868,734	-				-2.0
3,868,734	-				+0.5
3,868,745	+				+0.8
3,868,745	+				-1.1
3,868,745	+				+0.5
3,868,745	+				+0.2
3,868,745	+				-0.5
3,868,745	+				-1.0
3,868,745	+				-0.0
3,868,746	-				-1.8
3,868,746	-				+1.3
3,868,746	-				-1.4
3,868,746	-				+0.3
3,868,747	+				-0.0
3,868,747	+				-0.5
3,868,748	-				-1.9
3,868,748	-				-0.7
3,868,866	+				-1.9
3,868,866	+				+0.2
3,868,867	-				-0.1
3,868,867	-				+0.2
3,868,879	+				+2.5
3,868,879	+				+0.3
3,868,879	+				-0.4
3,868,880	-				+0.4
3,868,926	+				+0.3
3,868,926	+				-1.0
3,868,926	+				-1.7
3,868,972	-				-0.7
3,868,991	+				+0.4
3,869,016	-				-3.6
3,869,098	-				+0.3
3,869,107	+				-1.6
3,869,108	-				-3.2
3,869,219	+		PFR28_03363	0.11	-1.9
3,869,219	+		PFR28_03363	0.11	-3.3
3,869,219	+		PFR28_03363	0.11	-1.9
3,869,219	+		PFR28_03363	0.11	-3.3
3,869,220	-		PFR28_03363	0.12	-3.1
3,869,220	-		PFR28_03363	0.12	-2.5
3,869,614	+		PFR28_03363	0.54	-3.7
3,869,614	+		PFR28_03363	0.54	-3.7
3,869,614	+		PFR28_03363	0.54	-3.8
3,869,614	+		PFR28_03363	0.54	-2.9
3,869,614	+		PFR28_03363	0.54	-2.3
3,869,614	+		PFR28_03363	0.54	-3.4
3,869,614	+		PFR28_03363	0.54	-3.1
3,869,614	+		PFR28_03363	0.54	-2.0
3,869,614	+		PFR28_03363	0.54	-4.2
3,869,614	+		PFR28_03363	0.54	-4.7
3,869,614	+		PFR28_03363	0.54	-1.7
3,869,614	+		PFR28_03363	0.54	-2.2
3,869,614	+		PFR28_03363	0.54	-3.5
3,869,614	+		PFR28_03363	0.54	-3.0
3,869,614	+		PFR28_03363	0.54	-3.0
3,869,614	+		PFR28_03363	0.54	-0.6
3,869,614	+		PFR28_03363	0.54	-1.5
3,869,614	+		PFR28_03363	0.54	+0.7
3,869,614	+		PFR28_03363	0.54	-2.3
3,869,614	+		PFR28_03363	0.54	-0.9
3,869,614	+		PFR28_03363	0.54	-2.0
3,869,614	+		PFR28_03363	0.54	-3.7
3,869,614	+		PFR28_03363	0.54	-2.1
3,869,614	+		PFR28_03363	0.54	-0.7
3,869,614	+		PFR28_03363	0.54	-3.8
3,869,614	+		PFR28_03363	0.54	-4.8
3,869,614	+		PFR28_03363	0.54	-1.3
3,869,614	+		PFR28_03363	0.54	-3.2
3,869,614	+		PFR28_03363	0.54	-4.0
3,869,614	+		PFR28_03363	0.54	-0.7
3,869,614	+		PFR28_03363	0.54	-2.6
3,869,614	+		PFR28_03363	0.54	-4.3
3,869,614	+		PFR28_03363	0.54	-2.5
3,869,614	+		PFR28_03363	0.54	-2.9
3,869,614	+		PFR28_03363	0.54	-2.4
3,869,615	-		PFR28_03363	0.54	-1.3
3,869,615	-		PFR28_03363	0.54	-1.0
3,869,615	-		PFR28_03363	0.54	-2.6
3,869,615	-		PFR28_03363	0.54	-3.7
3,869,615	-		PFR28_03363	0.54	-3.1
3,869,615	-		PFR28_03363	0.54	+0.3
3,869,615	-		PFR28_03363	0.54	-0.3
3,869,615	-		PFR28_03363	0.54	-0.7
3,869,615	-		PFR28_03363	0.54	-1.1
3,869,615	-		PFR28_03363	0.54	-2.1
3,869,615	-		PFR28_03363	0.54	-1.7
3,869,615	-		PFR28_03363	0.54	-3.7
3,869,616	+		PFR28_03363	0.54	-3.0
3,869,616	+		PFR28_03363	0.54	-3.7
3,869,616	+		PFR28_03363	0.54	-3.1
3,869,616	+		PFR28_03363	0.54	-2.9
3,869,616	+		PFR28_03363	0.54	-3.8
3,869,616	+		PFR28_03363	0.54	-3.8
3,869,616	+		PFR28_03363	0.54	-1.9
3,869,617	-		PFR28_03363	0.55	-2.7
3,869,617	-		PFR28_03363	0.55	-3.8
3,869,617	-		PFR28_03363	0.55	-3.5
3,869,617	-		PFR28_03363	0.55	-2.8
3,869,617	-		PFR28_03363	0.55	-1.4
3,869,617	-		PFR28_03363	0.55	-2.0
3,869,618	+		PFR28_03363	0.55	-2.4
3,869,618	+		PFR28_03363	0.55	-0.3
3,869,618	+		PFR28_03363	0.55	-3.4
3,869,618	+		PFR28_03363	0.55	-1.4
3,869,618	+		PFR28_03363	0.55	-3.2
3,869,618	+		PFR28_03363	0.55	-3.1
3,869,618	+		PFR28_03363	0.55	-2.8
3,869,618	+		PFR28_03363	0.55	-0.3
3,869,618	+		PFR28_03363	0.55	-2.9
3,869,618	+		PFR28_03363	0.55	-3.6
3,869,618	+		PFR28_03363	0.55	-2.0
3,869,618	+		PFR28_03363	0.55	-2.9
3,869,618	+		PFR28_03363	0.55	-2.0
3,869,618	+		PFR28_03363	0.55	-2.9
3,869,618	+		PFR28_03363	0.55	-3.2
3,869,618	+		PFR28_03363	0.55	-2.5
3,869,618	+		PFR28_03363	0.55	+0.3
3,869,618	+		PFR28_03363	0.55	-1.5
3,869,618	+		PFR28_03363	0.55	-3.9
3,869,618	+		PFR28_03363	0.55	-2.6
3,869,618	+		PFR28_03363	0.55	-3.1
3,869,618	+		PFR28_03363	0.55	-2.6
3,869,619	-		PFR28_03363	0.55	-3.1
3,869,619	-		PFR28_03363	0.55	-2.1
3,869,619	-		PFR28_03363	0.55	-3.4
3,869,619	-		PFR28_03363	0.55	-1.6
3,869,619	-		PFR28_03363	0.55	-3.4
3,869,619	-		PFR28_03363	0.55	-3.5
3,869,619	-		PFR28_03363	0.55	-3.1
3,869,619	-		PFR28_03363	0.55	-1.9
3,869,619	-		PFR28_03363	0.55	-2.8
3,869,619	-		PFR28_03363	0.55	-3.9
3,869,619	-		PFR28_03363	0.55	-1.8
3,869,619	-		PFR28_03363	0.55	-3.1
3,869,619	-		PFR28_03363	0.55	-3.5
3,869,619	-		PFR28_03363	0.55	-2.4
3,869,619	-		PFR28_03363	0.55	-2.3
3,869,619	-		PFR28_03363	0.55	-3.9
3,869,619	-		PFR28_03363	0.55	-1.0
3,869,619	-		PFR28_03363	0.55	-4.1
3,869,619	-		PFR28_03363	0.55	-3.2
3,869,671	+		PFR28_03363	0.60	-5.0
3,869,672	-		PFR28_03363	0.60	-3.3
3,870,023	-				+0.2
3,870,239	+		PFR28_03364	0.19	-0.1
3,870,240	-		PFR28_03364	0.19	-1.6
3,870,303	+		PFR28_03364	0.24	-0.6
3,870,303	+		PFR28_03364	0.24	+0.1
3,870,303	+		PFR28_03364	0.24	-1.8
3,870,304	-		PFR28_03364	0.24	-1.2
3,870,658	+		PFR28_03364	0.56	-0.2
3,870,658	+		PFR28_03364	0.56	+0.5
3,870,658	+		PFR28_03364	0.56	-0.7
3,870,658	+		PFR28_03364	0.56	+0.3
3,870,658	+		PFR28_03364	0.56	+0.6
3,870,659	-		PFR28_03364	0.56	-0.3
3,870,659	-		PFR28_03364	0.56	-1.5
3,870,659	-		PFR28_03364	0.56	+1.2
3,870,659	-		PFR28_03364	0.56	-2.1
3,870,696	+		PFR28_03364	0.60	-0.8
3,870,696	+		PFR28_03364	0.60	+0.9
3,870,696	+		PFR28_03364	0.60	-0.5
3,870,696	+		PFR28_03364	0.60	-0.7
3,870,697	-		PFR28_03364	0.60	-0.4
3,870,697	-		PFR28_03364	0.60	-1.7
3,870,705	+		PFR28_03364	0.61	+0.5
3,870,753	+		PFR28_03364	0.65	-0.4
3,870,753	+		PFR28_03364	0.65	-0.7
3,870,753	+		PFR28_03364	0.65	-1.3
3,870,754	-		PFR28_03364	0.65	-1.2
3,870,754	-		PFR28_03364	0.65	+0.5
3,870,754	-		PFR28_03364	0.65	+0.2
3,870,754	-		PFR28_03364	0.65	+0.5
3,870,754	-		PFR28_03364	0.65	+0.5
3,870,754	-		PFR28_03364	0.65	+1.1
3,870,828	+		PFR28_03364	0.72	-0.2
3,870,828	+		PFR28_03364	0.72	-2.4
3,870,829	-		PFR28_03364	0.72	-0.8
3,870,859	+		PFR28_03364	0.74	-2.3
3,870,859	+		PFR28_03364	0.74	+1.7
3,870,859	+		PFR28_03364	0.74	-0.5
3,870,860	-		PFR28_03364	0.75	-0.0
3,870,860	-		PFR28_03364	0.75	+0.5
3,870,860	-		PFR28_03364	0.75	-0.6
3,870,860	-		PFR28_03364	0.75	-0.7
3,870,860	-		PFR28_03364	0.75	-2.1